Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04917 and BL00748

See Amino acid alignment / Visit BSNT_04917 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:06
# Commandline: needle
#    -asequence dna-align/BSNT_04917___yuxN.1.5803.seq
#    -bsequence dna-align/BL00748___yuxN.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04917___yuxN-BL00748___yuxN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04917___yuxN-BL00748___yuxN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04917___yuxN
# 2: BL00748___yuxN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 970
# Identity:     589/970 (60.7%)
# Similarity:   589/970 (60.7%)
# Gaps:         179/970 (18.5%)
# Score: 1638.5
# 
#
#=======================================

BSNT_04917___      1 TTGAAGGAAAAAGAAAAACTGATTATTGAAACAGCCTTAAAACTATTTGC     50
                     .||||..|||||||.|||.|.|||||||||||||||.|.|||||.||.||
BL00748___yux      1 ATGAAACAAAAAGAGAAAGTCATTATTGAAACAGCCATCAAACTTTTCGC     50

BSNT_04917___     51 CCAAAAAGGATACAACTCAACATCAGTTCAGGAAATCGCAAAAGAATGCA    100
                     ..||||||||||||..||.||.||||||||.||.||.||||||||.|||.
BL00748___yux     51 TAAAAAAGGATACAGTTCTACTTCAGTTCAAGAGATTGCAAAAGAGTGCC    100

BSNT_04917___    101 AAATATCTAAAGGCGCTTTTTATATTTATTTTCCTTCGAAAGAAGCGCTT    150
                     ||||.||.|||||||||||.||.|||||||||...||.|||||||||||.
BL00748___yux    101 AAATGTCAAAAGGCGCTTTCTACATTTATTTTAAATCAAAAGAAGCGCTC    150

BSNT_04917___    151 CTTCTCTCTATGCTGAACTACTATTATGATAAAACGTTTACCCGAATTTT    200
                     ||.||.||..|.||..|||||||.|||||.|.||..|||||||||||...
BL00748___yux    151 CTCCTTTCAGTCCTTCACTACTACTATGAAAGAATCTTTACCCGAATCCA    200

BSNT_04917___    201 AAATATTAAAACGAAGGGCGACAGCCCCAGAACG--GCTTACCGTAAACA    248
                     .||.||.||||||.||...||||..||  |..||  |..|||||.|..||
BL00748___yux    201 GAAAATCAAAACGGAGCATGACAATCC--GCGCGATGTGTACCGGATGCA    248

BSNT_04917___    249 GCTGACCGTCCTCTAT---GAAAACATTCTTGAACACAAAGATTTTATCA    295
                     |||   ||||.|.|.|   |||||||||.|.||.||.|||||.|||||||
BL00748___yux    249 GCT---CGTCGTTTTTTTCGAAAACATTTTGGAGCATAAAGAGTTTATCA    295

BSNT_04917___    296 GCATGCAGTTGAAGGAGGGTTCTCTGCCTTACACAGAAGAAGTGGAGCAA    345
                     ..||||||||.||.|||.|.||..||||...||..||||||.|.|||   
BL00748___yux    296 CGATGCAGTTTAATGAGCGGTCGATGCCGATCAATGAAGAAATTGAG---    342

BSNT_04917___    346 TGC----GCAAAAAAGATCCG-----CCAGTC-CTCA--CTTCAATTTCA    383
                      ||    ||.|||||.||.||     |||  | ||||  |      |.||
BL00748___yux    343 -GCGTTTGCGAAAAAAATGCGGAGAACCA--CGCTCAGGC------TGCA    383

BSNT_04917___    384 TATCGACAGCCTGCTGAACATCTATGGAAAAAAAGCGGAACCGTACACTG    433
                     .|||||.|.|.|.|.||||||.||.||.|||.|....||||||||||..|
BL00748___yux    384 CATCGAAAACATCCAGAACATTTACGGCAAAGACATTGAACCGTACAGCG    433

BSNT_04917___    434 CTGAGCTTTGTTTTTTAATAGAGGGCATCAGCCAGATTTACCTGGAG-TG    482
                     |.||.||.||.|||.|.||..|.||.||.|||.|..|.|||||.||| ||
BL00748___yux    434 CCGAACTGTGCTTTATGATCAACGGAATGAGCGATGTCTACCTTGAGCTG    483

BSNT_04917___    483 CATGATTTTGCTCGGGTACACT--GT--GA--AGCCGTCTCAATTAGCTG    526
                      |||||||||||   |.||..|  ||  ||  .||.|||||   |.||.|
BL00748___yux    484 -ATGATTTTGCT---GCACCATTCGTTCGACCTGCAGTCTC---TCGCCG    526

BSNT_04917___    527 ATATCATTATGAATCGAATTGATGATATGGTAAAAGGCATG-TCTGAA-C    574
                     |...|||..||||.||..|.||.|||.|||..||.||.||| ||  || |
BL00748___yux    527 ACCACATGCTGAACCGCCTCGACGATTTGGCGAAGGGGATGATC--AAGC    574

BSNT_04917___    575 GAAACGATAAGCCTTTCATCACATTGGAA----GAGGCGAGCTCTTTATT    620
                     |.||.||..||||..|.|||.||||.|||    .||.||||    |..||
BL00748___yux    575 GCAATGACCAGCCGCTGATCCCATTCGAAAAAGCAGACGAG----TGGTT    620

BSNT_04917___    621 CGGGCC-TCTTACGCACGGACGGCCTGACCCGCTGA-----------CTG    658
                     |||.|| |.||||.||       ..|||.|||||||           ||.
BL00748___yux    621 CGGCCCATTTTACACA-------TTTGATCCGCTGAAGGACGCCCTGCTC    663

BSNT_04917___    659 AATCGATTGTGAAAAGCCTACGTGACAAAATTAAC-AGCTTAAACACAA-    706
                     ||       |||||    |.||.|.||||...||| |||   |..|||| 
BL00748___yux    664 AA-------TGAAA----TGCGCGTCAAAGCGAACAAGC---AGTACAAC    699

BSNT_04917___    707 ---ACTCCTC-------TCTTGAATTATCGGAGAGCTTGGACATACTTGA    746
                        .||||||       .||||      |.||.|||.||||.||.||.||
BL00748___yux    700 GGCGCTCCTCCTGCAGACCTTG------CCGAAAGCCTGGATATTCTGGA    743

BSNT_04917___    747 -----AGC--AGAAATGAAGAA---AAAAACACCGAAGCTGGCGATCATA    786
                          |||  |||||.|||.||   ||||||          ||.||.||.
BL00748___yux    744 GAAAGAGCTGAGAAAAGAAAAACGCAAAAAC----------GCCATTATC    783

BSNT_04917___    787 AAAGGAATGATTCATAATCTGACGGAGTCTGAAGCTCTCGC------CAA    830
                     |||||.|||||....||..|||.|      |||..||.|||      .||
BL00748___yux    784 AAAGGCATGATAGCCAACTTGAAG------GAATATCCCGCGATTCGAAA    827

BSNT_04917___    831 AGATGCGGAGCAGCTTAAAT------ATTTATTAAAACAGCAACATATTT    874
                     |||..|||| ||    ||.|      |||..|.||||.||  ||||    
BL00748___yux    828 AGAAACGGA-CA----AACTCGCCGAATTGCTCAAAAAAG--ACAT----    866

BSNT_04917___    875 AG------------------    876
                      |                  
BL00748___yux    867 -GCACCATCCGCACGGATGA    885


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