Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04917 and BL00748
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:06
# Commandline: needle
# -asequence dna-align/BSNT_04917___yuxN.1.5803.seq
# -bsequence dna-align/BL00748___yuxN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04917___yuxN-BL00748___yuxN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04917___yuxN-BL00748___yuxN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04917___yuxN
# 2: BL00748___yuxN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 970
# Identity: 589/970 (60.7%)
# Similarity: 589/970 (60.7%)
# Gaps: 179/970 (18.5%)
# Score: 1638.5
#
#
#=======================================
BSNT_04917___ 1 TTGAAGGAAAAAGAAAAACTGATTATTGAAACAGCCTTAAAACTATTTGC 50
.||||..|||||||.|||.|.|||||||||||||||.|.|||||.||.||
BL00748___yux 1 ATGAAACAAAAAGAGAAAGTCATTATTGAAACAGCCATCAAACTTTTCGC 50
BSNT_04917___ 51 CCAAAAAGGATACAACTCAACATCAGTTCAGGAAATCGCAAAAGAATGCA 100
..||||||||||||..||.||.||||||||.||.||.||||||||.|||.
BL00748___yux 51 TAAAAAAGGATACAGTTCTACTTCAGTTCAAGAGATTGCAAAAGAGTGCC 100
BSNT_04917___ 101 AAATATCTAAAGGCGCTTTTTATATTTATTTTCCTTCGAAAGAAGCGCTT 150
||||.||.|||||||||||.||.|||||||||...||.|||||||||||.
BL00748___yux 101 AAATGTCAAAAGGCGCTTTCTACATTTATTTTAAATCAAAAGAAGCGCTC 150
BSNT_04917___ 151 CTTCTCTCTATGCTGAACTACTATTATGATAAAACGTTTACCCGAATTTT 200
||.||.||..|.||..|||||||.|||||.|.||..|||||||||||...
BL00748___yux 151 CTCCTTTCAGTCCTTCACTACTACTATGAAAGAATCTTTACCCGAATCCA 200
BSNT_04917___ 201 AAATATTAAAACGAAGGGCGACAGCCCCAGAACG--GCTTACCGTAAACA 248
.||.||.||||||.||...||||..|| |..|| |..|||||.|..||
BL00748___yux 201 GAAAATCAAAACGGAGCATGACAATCC--GCGCGATGTGTACCGGATGCA 248
BSNT_04917___ 249 GCTGACCGTCCTCTAT---GAAAACATTCTTGAACACAAAGATTTTATCA 295
||| ||||.|.|.| |||||||||.|.||.||.|||||.|||||||
BL00748___yux 249 GCT---CGTCGTTTTTTTCGAAAACATTTTGGAGCATAAAGAGTTTATCA 295
BSNT_04917___ 296 GCATGCAGTTGAAGGAGGGTTCTCTGCCTTACACAGAAGAAGTGGAGCAA 345
..||||||||.||.|||.|.||..||||...||..||||||.|.|||
BL00748___yux 296 CGATGCAGTTTAATGAGCGGTCGATGCCGATCAATGAAGAAATTGAG--- 342
BSNT_04917___ 346 TGC----GCAAAAAAGATCCG-----CCAGTC-CTCA--CTTCAATTTCA 383
|| ||.|||||.||.|| ||| | |||| | |.||
BL00748___yux 343 -GCGTTTGCGAAAAAAATGCGGAGAACCA--CGCTCAGGC------TGCA 383
BSNT_04917___ 384 TATCGACAGCCTGCTGAACATCTATGGAAAAAAAGCGGAACCGTACACTG 433
.|||||.|.|.|.|.||||||.||.||.|||.|....||||||||||..|
BL00748___yux 384 CATCGAAAACATCCAGAACATTTACGGCAAAGACATTGAACCGTACAGCG 433
BSNT_04917___ 434 CTGAGCTTTGTTTTTTAATAGAGGGCATCAGCCAGATTTACCTGGAG-TG 482
|.||.||.||.|||.|.||..|.||.||.|||.|..|.|||||.||| ||
BL00748___yux 434 CCGAACTGTGCTTTATGATCAACGGAATGAGCGATGTCTACCTTGAGCTG 483
BSNT_04917___ 483 CATGATTTTGCTCGGGTACACT--GT--GA--AGCCGTCTCAATTAGCTG 526
||||||||||| |.||..| || || .||.||||| |.||.|
BL00748___yux 484 -ATGATTTTGCT---GCACCATTCGTTCGACCTGCAGTCTC---TCGCCG 526
BSNT_04917___ 527 ATATCATTATGAATCGAATTGATGATATGGTAAAAGGCATG-TCTGAA-C 574
|...|||..||||.||..|.||.|||.|||..||.||.||| || || |
BL00748___yux 527 ACCACATGCTGAACCGCCTCGACGATTTGGCGAAGGGGATGATC--AAGC 574
BSNT_04917___ 575 GAAACGATAAGCCTTTCATCACATTGGAA----GAGGCGAGCTCTTTATT 620
|.||.||..||||..|.|||.||||.||| .||.|||| |..||
BL00748___yux 575 GCAATGACCAGCCGCTGATCCCATTCGAAAAAGCAGACGAG----TGGTT 620
BSNT_04917___ 621 CGGGCC-TCTTACGCACGGACGGCCTGACCCGCTGA-----------CTG 658
|||.|| |.||||.|| ..|||.||||||| ||.
BL00748___yux 621 CGGCCCATTTTACACA-------TTTGATCCGCTGAAGGACGCCCTGCTC 663
BSNT_04917___ 659 AATCGATTGTGAAAAGCCTACGTGACAAAATTAAC-AGCTTAAACACAA- 706
|| ||||| |.||.|.||||...||| ||| |..||||
BL00748___yux 664 AA-------TGAAA----TGCGCGTCAAAGCGAACAAGC---AGTACAAC 699
BSNT_04917___ 707 ---ACTCCTC-------TCTTGAATTATCGGAGAGCTTGGACATACTTGA 746
.|||||| .|||| |.||.|||.||||.||.||.||
BL00748___yux 700 GGCGCTCCTCCTGCAGACCTTG------CCGAAAGCCTGGATATTCTGGA 743
BSNT_04917___ 747 -----AGC--AGAAATGAAGAA---AAAAACACCGAAGCTGGCGATCATA 786
||| |||||.|||.|| |||||| ||.||.||.
BL00748___yux 744 GAAAGAGCTGAGAAAAGAAAAACGCAAAAAC----------GCCATTATC 783
BSNT_04917___ 787 AAAGGAATGATTCATAATCTGACGGAGTCTGAAGCTCTCGC------CAA 830
|||||.|||||....||..|||.| |||..||.||| .||
BL00748___yux 784 AAAGGCATGATAGCCAACTTGAAG------GAATATCCCGCGATTCGAAA 827
BSNT_04917___ 831 AGATGCGGAGCAGCTTAAAT------ATTTATTAAAACAGCAACATATTT 874
|||..|||| || ||.| |||..|.||||.|| ||||
BL00748___yux 828 AGAAACGGA-CA----AACTCGCCGAATTGCTCAAAAAAG--ACAT---- 866
BSNT_04917___ 875 AG------------------ 876
|
BL00748___yux 867 -GCACCATCCGCACGGATGA 885
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