Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04976 and BL00738
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:10
# Commandline: needle
# -asequence dna-align/BSNT_04976___yvgJ.1.5803.seq
# -bsequence dna-align/BL00738___yvgJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04976___yvgJ-BL00738___yvgJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04976___yvgJ-BL00738___yvgJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04976___yvgJ
# 2: BL00738___yvgJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1925
# Identity: 1346/1925 (69.9%)
# Similarity: 1346/1925 (69.9%)
# Gaps: 136/1925 ( 7.1%)
# Score: 4464.0
#
#
#=======================================
BSNT_04976___ 1 ATGAAAGGAAC-CTTTTTTCACAATCAGCGGTTTTTATGTTTTTCGATCT 49
|||||| |||| .||||||.|.||.|||.||||||||||..|.||.||.|
BL00738___yvg 1 ATGAAA-GAACAATTTTTTAAAAAGCAGTGGTTTTTATGCCTATCCATAT 49
BSNT_04976___ 50 TATTTATGTGGATCAAAACGTATGTGATATATAAACTCGGCTTTGATTTG 99
|.||.||.|||||.||.|||||..|.||.||.||.||.||||||.||||.
BL00738___yvg 50 TTTTCATATGGATGAAGACGTACTTCATCTACAAGCTGGGCTTTAATTTA 99
BSNT_04976___ 100 CAAATCGA-TACTCTGTTGGAGGAGCTAATGCTGCTGGTCAACCCGCTCA 148
|||||||| .||.|..|| .||||.||.||.|||.|..||||||||||.|
BL00738___yvg 100 CAAATCGACAACGCACTT-CAGGAACTGATCCTGTTTATCAACCCGCTTA 148
BSNT_04976___ 149 GCTTTATTCTTCCTTTATTCGGGATCGGCCTGCTTCT-----GAAAGGAA 193
|||||.|..|.|||.||.||||.|||.|||| |||.| |||| ||
BL00738___yvg 149 GCTTTCTCATCCCTGTACTCGGCATCAGCCT-CTTTTTTCGCGAAA--AA 195
BSNT_04976___ 194 ACAAGCAGCG-GGCTTTTTTGCTGATT----GCCAATTTGGTTCTGACTG 238
.| |||||| ..||.||| |.| ||.|||.|.||.|||||.|
BL00738___yvg 196 TC--GCAGCGCATCTATTT-----AATCGGGGCTAATGTCGTCCTGACGG 238
BSNT_04976___ 239 TTATCTTGATCTCTAATACGATTTTTTACGGCTTTTATATCGATTTTATT 288
..||||||||..|.||.|..||||||||.||.||.||.||||||||.||.
BL00738___yvg 239 GCATCTTGATTGCAAACAGCATTTTTTATGGTTTCTACATCGATTTCATC 288
BSNT_04976___ 289 ACCATTCCGGTTTTATTTCAGGCGAGCAACAT----GAGCGATATGGGAA 334
||||||||.||..|.||.|||||.|..|||.| |.|| |.||||
BL00738___yvg 289 ACCATTCCCGTCCTGTTCCAGGCAAAAAACCTCGGGGGGC----TTGGAA 334
BSNT_04976___ 335 GCAGTGTAAAAGAATTGTTCCATCCTCTGTTTATCGCCCTGTTTGTGGAT 384
|||||.|..|.||..||||..||||..|.||.|||||.||.||..||||.
BL00738___yvg 335 GCAGTTTTCAGGAGCTGTTTAATCCGGTTTTCATCGCGCTTTTCCTGGAC 384
BSNT_04976___ 385 TTGGTTTT-----TCTGCTGCTGTTCGCCAGAAAAA----CCAAACACCC 425
.|||.|.| |||| |||| || ||||| |.|||.|
BL00738___yvg 385 CTGGCTCTCATGGTCTG--GCTG---GC---AAAAACGCGCGAAAGA--- 423
BSNT_04976___ 426 ACAGACAAAAGCCGCTCCCCGC----------ACGATCAAACGGTACTAT 465
||.|.||||| .|||..|||| |.|||| ||||||
BL00738___yvg 424 ACCGGCAAAA--AGCTTTCCGCTAAAGCCGTTAAGATC------TACTAT 465
BSNT_04976___ 466 GCAGCTTCCTGCGGCA---TGC--TTTTATGCACACTGGCACTTGCAGAA 510
||.||..||..|||.| ||| |||.|| ||.||.||..|.||.
BL00738___yvg 466 GCGGCAGCCGCCGGAACGGTGCTGTTTAAT-----CTCGCCCTGTCGGAG 510
BSNT_04976___ 511 GTACAGCAGCCGAAGCTTTT--GGCACATTCTTTTGACCGGGAAATGCTA 558
.|..|.|||||||||.|||| |..|| ||||..|||.|||||.||||.
BL00738___yvg 511 CTGGATCAGCCGAAGTTTTTAAGCTAC--TCTTACGACAGGGAAGTGCTT 558
BSNT_04976___ 559 GTCAAAAGCATCGGCCTGTTTCAGTTCCATATTTACGATACAATTTCTCA 608
||.||||..||||||.|||.||||||.|||.|.|..||....|||||.||
BL00738___yvg 559 GTAAAAAATATCGGCTTGTATCAGTTTCATCTGTTGGACGGCATTTCACA 608
BSNT_04976___ 609 GACTGTTAATATCAGCGC-GAAAGCTTTTGCCGATGAAGACAGTATAACT 657
|||..|||||.|.| |.| .|||||..|.||.||||||.|||| .||
BL00738___yvg 609 GACCTTTAATTTGA-CACAAAAAGCGGTCGCTGATGAAAACAG----CCT 653
BSNT_04976___ 658 G----CCATTAAAAACTACACAGAGGCTGATTACAGCAAGCCTGATCAAA 703
| |.||..|||||||||||.|.||.||.||||||||.|| ||.|.||
BL00738___yvg 654 GGCAACGATCGAAAACTACACAAATGCCGACTACAGCAAACC-GAACCAA 702
BSNT_04976___ 704 GCAAA--TTCGGTCTTGCAAAGGGGCGCAATGTCATCTTTGTAACACTTG 751
| |.| |||||..||||.||.||.||.||.||||||||||||||.||||
BL00738___yvg 703 G-ATATGTTCGGAATTGCCAAAGGACGAAACGTCATCTTTGTAACGCTTG 751
BSNT_04976___ 752 AATCGACCCAAAGCTTTGTTCTGAATGAAAAAGTAAATGGAAAAGAAATT 801
||||.|||||.|..|||||..|.||||||||.||.||.||..|.|||||.
BL00738___yvg 752 AATCCACCCAGACATTTGTCATCAATGAAAAGGTGAACGGCCAGGAAATC 801
BSNT_04976___ 802 ACCCCATTTATGAATGATCTCATTAAAAAAAGCTATTCCTTTGATCATTT 851
||.||.||.|||||..|..|||||.||||||||||||..||.||.|||||
BL00738___yvg 802 ACGCCGTTCATGAACAAGTTCATTCAAAAAAGCTATTATTTCGACCATTT 851
BSNT_04976___ 852 CTATCAGCAAACAGAACAAGGCAAAACATCAGATTCAGAATTTATCGTCG 901
.||||||||.||.|||||.||.|||||.||.|||||.|||||.||.||||
BL00738___yvg 852 TTATCAGCAGACCGAACAGGGGAAAACGTCCGATTCGGAATTCATTGTCG 901
BSNT_04976___ 902 CTAACTCACTGTATCCTTCCCTTAGCGGCGCCGTCTTTTTCACGAAAAGC 951
||||.||.||.|||||.||.||.|||||..|.||.|||||.|||||.|||
BL00738___yvg 902 CTAATTCGCTCTATCCGTCTCTGAGCGGTTCGGTGTTTTTTACGAAGAGC 951
BSNT_04976___ 952 GACCAT-----CAATTTTATACGATGTATAAATCGCTGAAGCAGCACGAT 996
||..|| ||||| |||||||||||.|.|||..|.|.|||.||
BL00738___yvg 952 GAGAATGCGTACAATT-----CGATGTATAAAACACTGGCGAACCACAAT 996
BSNT_04976___ 997 TATTATTCAG-----CCGTCTTTCATGCTAACCATAAAACATTTTGGAAC 1041
|| ||| |.||.||.||.||.||||||||||.|||.||||||
BL00738___yvg 997 TA-----CAGAACATCGGTTTTCCACGCCAACCATAAAAAATTCTGGAAC 1041
BSNT_04976___ 1042 AGAGATGTCATGTACGATACATTTGGCATTGACCGCTTTTTTGATGTTGA 1091
||.||.|||||||||.|..|..|.|||||.|||.||||||.|||.||...
BL00738___yvg 1042 AGGGACGTCATGTACAAAGCCCTCGGCATCGACAGCTTTTATGACGTCTC 1091
BSNT_04976___ 1092 TGATTTTCATGTCACTCCCGGGACATCGACAAGCTGGGGTTTAAAAGACA 1141
..||||||||||.||.||.|..|..||.||..|||||||..|.||.||.|
BL00738___yvg 1092 CCATTTTCATGTGACACCTGAAAATTCAACGGGCTGGGGGCTGAAGGATA 1141
BSNT_04976___ 1142 AAGAATTTTTAGAGCAGTCCGCCGAAAAGCTGAAAAGCCTGCCGCAGCCG 1191
|.||.||||||..|||.||.|||||...|.|||||..|.||||||||||.
BL00738___yvg 1142 AGGAGTTTTTAACGCAATCGGCCGACTTGATGAAAGACTTGCCGCAGCCC 1191
BSNT_04976___ 1192 TTCTACAGCAGTTTTATCACGTTAACGAATCATTTTCCGTTTGAGATTGA 1241
||.|||||||...|.|||||.||.||||||||||||||.|||.|.|||||
BL00738___yvg 1192 TTTTACAGCAACCTGATCACATTGACGAATCATTTTCCATTTCAAATTGA 1241
BSNT_04976___ 1242 TGAAAAGGATCAGCTGATAGATGAATTCGATTCA-AGCAGTGATCTGTTA 1290
|||..|||||.|||||||.|||||.|.||||||| || |||||..|.|||
BL00738___yvg 1242 TGACGAGGATAAGCTGATCGATGAGTACGATTCAGAG-AGTGACATTTTA 1290
BSNT_04976___ 1291 AACCGCTATGTGACCACGGTTCGCTATGAGGATGAGGCATTGAAGCATTT 1340
|||||.|||||.||.||.||.||||||||.||.||.||||||||||||||
BL00738___yvg 1291 AACCGGTATGTCACGACTGTACGCTATGAAGACGAAGCATTGAAGCATTT 1340
BSNT_04976___ 1341 TATCAAAAAACTGAAGGACGAAGGCTTATACGAAAATTCGATGATCGTAT 1390
.|||..||||||||||.|..|.|||.|.|||||.|||||..|||||||.|
BL00738___yvg 1341 CATCGCAAAACTGAAGAAAAACGGCCTTTACGACAATTCTGTGATCGTGT 1390
BSNT_04976___ 1391 TTATGGGAGATCATTACGGCATTTCTGAAGCCCATAACGAGGCCATGGCT 1440
|.|||||||||||.||||||||.||.|||||.||.|||||.||..|||||
BL00738___yvg 1391 TCATGGGAGATCACTACGGCATATCAGAAGCGCACAACGATGCGCTGGCT 1440
BSNT_04976___ 1441 GAGTTTTTAAGGAAAGACGAAATCACACCGTATGACAACGTTCAGCTCCA 1490
.|.|||||..|.||||||||||||||.||.||.||.|.|||||||||.||
BL00738___yvg 1441 CAATTTTTGGGCAAAGACGAAATCACCCCCTACGATACCGTTCAGCTGCA 1490
BSNT_04976___ 1491 GCGGGTGCCGTTTATCATACATATCCCGGGAATCACCGATCAACAGCCGG 1540
||||||||||.|.||.||.||.||.|||||..|.||.||||||.|.|||.
BL00738___yvg 1491 GCGGGTGCCGCTGATTATCCACATTCCGGGGGTAACGGATCAAGACCCGA 1540
BSNT_04976___ 1541 AAACCATCCCTGATGCCGGGGGACAGGTCGACGTCAGGCCGACGCTGATG 1590
||||.||..|.||..|.||.||.||..|.||.||||..|||||..||.|.
BL00738___yvg 1541 AAACGATATCCGAAACAGGCGGCCAAATTGATGTCAAACCGACATTGCTC 1590
BSNT_04976___ 1591 CATTTGCTCGGCGTTGAGACAAAAGGCGAT-ATCCAATTCGGCAATGATT 1639
|||||||||||..||||.||||||||| || ||.||||||||||||||..
BL00738___yvg 1591 CATTTGCTCGGAATTGATACAAAAGGC-ATGATTCAATTCGGCAATGACC 1639
BSNT_04976___ 1640 TGCTGTCGGGCGACCGCACCCCATTCGCCGTTCTGCGAAACGGCAGCTTT 1689
||.|.|||...||..|.|..||.|||||.||..||.||||||||||||||
BL00738___yvg 1640 TGTTTTCGAAAGAAAGAATGCCTTTCGCTGTGTTGAGAAACGGCAGCTTT 1689
BSNT_04976___ 1690 ATTACGAACGATTATATATACACAAAGAACACGTGCTATAGCCAAAAAAC 1739
|||||..|.||||||||.|||||.||.||.||||||||.|||.|||||||
BL00738___yvg 1690 ATTACAGATGATTATATCTACACGAAAAATACGTGCTACAGCAAAAAAAC 1739
BSNT_04976___ 1740 AGGTGAAGTGCTGGAAGAT---CAGG----ATGCGTGCCTCCCTTACAAG 1782
.||.||..||.|..|.||| .||| ||||| .||||..||..
BL00738___yvg 1740 CGGGGACATGATCAACGATGGAGAGGACAAATGCG----GCCCTCTCATC 1785
BSNT_04976___ 1783 GAGAAAGCAAACGAAGAACTTTCTCTCTCTGATAAAATTTTAAATGGTGA 1832
|||||.||.||.|||||||||||.||.||.|||||.|||.|.||.|||||
BL00738___yvg 1786 GAGAAGGCGAATGAAGAACTTTCCCTTTCCGATAAGATTATTAACGGTGA 1835
BSNT_04976___ 1833 CCTGCTCAGGTTTTCCGAATGA--- 1854
..||||.||.||||.|.||..|
BL00738___yvg 1836 TTTGCTGAGATTTTACAAAAAATAA 1860
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