Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00472 and BL00736
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:06
# Commandline: needle
# -asequence dna-align/BSNT_00472___ycbU.1.5803.seq
# -bsequence dna-align/BL00736___ycbU.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00472___ycbU-BL00736___ycbU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00472___ycbU-BL00736___ycbU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00472___ycbU
# 2: BL00736___ycbU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1290
# Identity: 718/1290 (55.7%)
# Similarity: 718/1290 (55.7%)
# Gaps: 342/1290 (26.5%)
# Score: 1739.0
#
#
#=======================================
BSNT_00472___ 1 ATGGAGCAT---TTGCCGCAGCAGTAT-CGTCATTTATTCCCAACCTTG- 45
|||.||||| || |..||.|.| |||..|||||||||.|..|||
BL00736___ycb 1 ATGAAGCATCCATT----CGACAATTTCCGTTCTTTATTCCCGAAATTGT 46
BSNT_00472___ 46 CAGA-CGCATACGATG-----CTTGCCAGC-TGTTCTCAG-AGCGCATTG 87
|.|| | ||| |||||| || ||||| |.| |||||||||
BL00736___ycb 47 CTGATC-------ATGTTCATCTTGCC-GCATGTTC-CGGAAGCGCATTG 87
BSNT_00472___ 88 GCAGAGCCTGTATCAAGGGCGATCCAGGATTATCATGATAGCCTGCTGTA 137
||...||||||..|.|..|||.||.|.||.|||||..|..|||| |.
BL00736___ycb 88 GCTCTGCCTGTTGCCAAAGCGGTCGATGAGTATCAGAACGGCCT----TT 133
BSNT_00472___ 138 TAA----AGGGACGAACTGGAAAGAAGCGATTGAAAAAACAGAGTTTGCG 183
||| .||..|..|||||||||.|....|.||.||.|..|| ||.|
BL00736___ycb 134 TAACAGCCGGTGCAGACTGGAAAGCACATCTCGACAAGATGGA---TGAG 180
BSNT_00472___ 184 A-----GAAACGAGTTTGCAAAGCTGATCGGGGCTGAACCGGATGAAGTG 228
| |||| |.||.||...|||||||||.||||||...||.||..|.
BL00736___ycb 181 ACCAAGGAAA--AATTCGCCCGGCTGATCGGTGCTGAAAAAGAAGAGATA 228
BSNT_00472___ 229 GCGATTGTGCCGTCAGTTTCTGATGCACTGGTTTCTGTAGCATCGTCCTT 278
||..||.||||||||||.|||||.|||.|||...||||.|| ||
BL00736___ycb 229 GCCGTTTTGCCGTCAGTATCTGACGCAGTGGCCGCTGTGGC--CG----- 271
BSNT_00472___ 279 AACTGCATT---------------TGGAAAGAAG--CACGTTGTATATAC 311
|.|||.| |.|||.|.|| |.|.|| .||
BL00736___ycb 272 --CCGCAATGCCGCAGCCACCCCGTCGAAGGCAGATCGCCTT-----CAC 314
BSNT_00472___ 312 AGATATGGATTTTCCGGCGGT--GCCTCATGTTTGGCAGGCACACTCCGA 359
.|||||.||||||||.||.|| || ||..||||||..||.||
BL00736___ycb 315 GGATATCGATTTTCCTGCTGTCGGC--CAAATTTGGCTTGCGCA------ 356
BSNT_00472___ 360 TTATACCGTATC--------CGTCATTCCATCAAT--------AGACGGC 393
|.||||..|| |.|||| |||||.| |||.||.
BL00736___ycb 357 --AGACCGCTTCAAAGATCACCTCAT--CATCATTCAAAGCGAAGATGGG 402
BSNT_00472___ 394 GTG-----CTGCCGCTTGAACAATATGAA----ACGCATATTTCGGATGA 434
.|| || |.||||||||.||| ||| ||.|.|||.|
BL00736___ycb 403 ATGATTGACT-----TGGAACAATACGAAAAAGACG----TTACCGATCA 443
BSNT_00472___ 435 AACAGTACTGACGTGTGTTCCTCACGTTCATTATCGTGACGGCTAT---- 480
.||..|..||||||||||.||.|| ||.|||||||
BL00736___ycb 444 GACGCTCTTGACGTGTGTGCCCCA------------TGCCGGCTATCGGA 481
BSNT_00472___ 481 ----GTT----CAGGATATAAAAGC-GATTGCCGAGATTTCTCA-GAGAA 520
||| ||.||.|| ||||| |||||||||||||..||| .||||
BL00736___ycb 482 ACGGGTTTAAGCAAGACAT-AAAGCAGATTGCCGAGATTGTTCATCAGAA 530
BSNT_00472___ 521 AGGG-CTCTTTATTGTTTGTAGATGCTTATCAATCAGCCGGGCATATTCC 569
|||| |.||| ||.||.||.||.||.|||||..|.|||||.||.|||||
BL00736___ycb 531 AGGGTCGCTT--TTATTCGTCGACGCCTATCAGACTGCCGGCCACATTCC 578
BSNT_00472___ 570 CATTGATGTGAAGGA-ATGGGGCGAA----GAAATGCTGGCAGCAGGCAC 614
.|||.||||.||.|| |||| | ||.||.||.||.||.||.||
BL00736___ycb 579 GATTCATGTCAAAGACATGG-----ATATCGACATCCTTGCGGCGGGGAC 623
BSNT_00472___ 615 CCGGAAGTATTTGCTCGGCATACCGGGTGTGGCGTTTCTTTATGTGAGAA 664
.||.||.||..||||||||||.||.||....||.|||.|.|||.||| ||
BL00736___ycb 624 GCGCAAATACATGCTCGGCATTCCCGGAACAGCTTTTTTATATATGA-AA 672
BSNT_00472___ 665 AG-GAGCTGGCTGACGCAC----TGAAGCCGAAAGCATCAGCTTGGTTCG 709
.| ||.|| |..||.|| || ||||.|||.|..|.|..|||||||
BL00736___ycb 673 CGCGAACT---TTGCGAACAATTTG-AGCCAAAAACGGCCGGCTGGTTCG 718
BSNT_00472___ 710 GCAGAGAGAACG-GATTTG----AG---GGGGCTTATGCGAAAGACGCG- 750
|.|| |||..|| .||||| || ..||||| ||||.|||..|||
BL00736___ycb 719 GAAG-GAGCGCGCCATTTGCCTTAGATTCAGGCTT-TGCGGAAGGTGCGA 766
BSNT_00472___ 751 --CGCCGTTTTC-AAACGGGCACCCCAGCTTTTATCAGCGTATACGCAGC 797
||| ||| |..||||.||.||..|.|||||||||.||||.||.||
BL00736___ycb 767 AACGC----TTCGAGTCGGGGACACCGTCATTTATCAGCATATATGCGGC 812
BSNT_00472___ 798 TGCAGCGGCTTTATCGCTGC----TGAATCATATTGGAGTTTCTCATACT 843
.|..|||||.||...||||| ||||.| |||| |.
BL00736___ycb 813 AGACGCGGCATTGAAGCTGCTGCTTGAAGC-----GGAG---------CC 848
BSNT_00472___ 844 CG---GGATCATGTGAAAACGATCTG--------TGCCG-ATGCAGTT-- 879
|| ||||| ||...|.||||| |||.| ||.|..||
BL00736___ycb 849 CGACAGGATC----GAGCCCTATCTGCGGCAGCTTGCGGCATTCTCTTTG 894
BSNT_00472___ 880 CAATATGCCGCTGAAAAAGGCCTGCAGCTGGCGGCGGCACAAGGTGGGGG 929
|||||.|..||.||||||||||||.||.| ||||.|
BL00736___ycb 895 CAATACGGTGCGGAAAAAGGCCTGAAGAT--------CACAGG------- 929
BSNT_00472___ 930 TCAGCCA----GGTATGGTTGCGATCCGGGATGAGCGGGCATCGGAAACG 975
|.||| .||| ||| |||.
BL00736___ycb 930 --ACCCAACACCGTA------------------------CAT----AACA 949
BSNT_00472___ 976 G--------------CGGCGT-TGCTGAAGAA------------GAA--- 995
| |||.|| |||.|||||| |||
BL00736___ycb 950 GAACAAGCCTGATCTCGGTGTATGCCGAAGAAGCCGCCCGTGTTGAATCC 999
BSNT_00472___ 996 ----------AAAAG----TGATTTGCGCGCC-----GCGGGACAATGTG 1026
||||| |.|| ||.| |||..||||.||.
BL00736___ycb 1000 CTCTTGCGTGAAAAGCATATCAT-----CGTCTCAAAGCGAAACAACGTC 1044
BSNT_00472___ 1027 ATCCGTCTCGCTCCCCATTTTTATAATACGAAGGAGGACATGCGG-CGCG 1075
||..|..|.||.||.||||||||.|||||.||||||||.|| ||| ...|
BL00736___ycb 1045 ATAAGAATAGCCCCGCATTTTTACAATACAAAGGAGGAAAT-CGGATTTG 1093
BSNT_00472___ 1076 CGATTGATGAGATCGCGGCGAAAACGATCCACAAG--TAA 1113
.|||.|||||||||||||| ||.|| .|| |||
BL00736___ycb 1094 TGATGGATGAGATCGCGGC--AATCG------TAGGCTAA 1125
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