Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04035 and BL00735
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:05
# Commandline: needle
# -asequence dna-align/BSNT_04035.1.5803.seq
# -bsequence dna-align/BL00735.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04035-BL00735.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04035-BL00735.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04035
# 2: BL00735
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 653
# Identity: 243/653 (37.2%)
# Similarity: 243/653 (37.2%)
# Gaps: 343/653 (52.5%)
# Score: 447.5
#
#
#=======================================
BSNT_04035 1 ATGACAATACGTTTTTTCCATTTCTGTCTCCCCTCACCCTTTATTG-GCT 49
||.| |||
BL00735 1 ------------------------------------------ATGGAGCT 8
BSNT_04035 50 TTATTTCATCTTATCATTGCTTTATTAAGGT-AATTTTAAAGAAATGTAA 98
||||.|| .||||| |||| || |
BL00735 9 TTATATC------------------GAAGGTGAATT----AG-------A 29
BSNT_04035 99 AGATCATATGAA--------TCCGATATATAGTAAAATGAGAGAAAAAAA 140
|||.||||.||| .||| ||||
BL00735 30 AGAGCATAGGAAGCTGCCGCACCG----------------------AAAA 57
BSNT_04035 141 GGGAGAGAGTCACATTAAGACACGCAGCAACATCCCGCTTATTATGTTTG 190
| ||.||||||
BL00735 58 G----------------------------------------TTTTGTTTG 67
BSNT_04035 191 CCCT----GCTGGTCTTCTTCGG--CGGCG----CCATC-----TAT--T 223
||.| ||||.|.|.||..|| ||| | ||||| ||| |
BL00735 68 CCATTTTGGCTGTTTTGCTAGGGTCCGG-GATTACCATCGGATATATCGT 116
BSNT_04035 224 GGAT-----GTTATTTTCACTAAAAAACGTTCCGAAAGGCAAT------- 261
|.|| .||.|.|||..|.||..|..|.||||||||.|||
BL00735 117 GTATACGCATTTTTATTCGATGAATCATCTGCCGAAAGGAAATTGGTTTC 166
BSNT_04035 262 -CTCGTCCAATCGGTT----GAATCGCCGGACGGCAGCTATACGTTAAAC 306
.||.|| ||||| ||||| .||| |||| |||
BL00735 167 AGTCTTC----CGGTTCGCCGAATC---------AAGC-ATAC----AAC 198
BSNT_04035 307 ACT---TATGTAT---------------------CCGAAAACACCTTGAG 332
|| |.||||| .||||..|.||||..|
BL00735 199 -CTGAATTTGTATAGAGTGAACAAAGGCGGGGGAACGAACTCCCCTTCCG 247
BSNT_04035 333 CTTAGATG--------CA------GCCAGAGGTGAAC------------- 355
|.|||.| || ||||..|||||||
BL00735 248 -TCAGAGGGGAATTGACAACGGTTGCCACCGGTGAACGAAAGAATATCTA 296
BSNT_04035 356 TT--GTAAATGAAAAAACACTTGTCAAGAGAACAATCTACTGGAATTACC 403
|| |.|.|.|||.||..||.||.||| ||||.|.||| |
BL00735 297 TTGGGGATACGAAGAAGAACATGCCAA------AATCGAATGG------C 334
BSNT_04035 404 CGGACAGCCGCCCAGCAGTGACGTGGGTCAATCACCATACA--GTGAAAA 451
.||||| |.|..|.||.|||.||||.|| ||| |||
BL00735 335 AGGACA----------AATACCATGTGTCCATCAACA-ACAATGTG---- 369
BSNT_04035 452 TC-GGCAATCAGACTTTACATCTTGATACTGATGAAACGTATGATTGGCG 500
| ||...||||| |||||| |..||||||.|..|
BL00735 370 -CTGGACGTCAGA--------------ACTGAT---ATATATGATGGAAG 401
BSNT_04035 501 AAAAGA-TGATCATTGGATCCGTGAAGAACCGCCGCAGGCGTCAGTGAGG 549
||.||| |||
BL00735 402 AAGAGAGTGA---------------------------------------- 411
BSNT_04035 550 TGA 552
BL00735 411 --- 411
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