Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04035 and BL00735

See Amino acid alignment / Visit BSNT_04035 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:05
# Commandline: needle
#    -asequence dna-align/BSNT_04035.1.5803.seq
#    -bsequence dna-align/BL00735.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04035-BL00735.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04035-BL00735.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04035
# 2: BL00735
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 653
# Identity:     243/653 (37.2%)
# Similarity:   243/653 (37.2%)
# Gaps:         343/653 (52.5%)
# Score: 447.5
# 
#
#=======================================

BSNT_04035         1 ATGACAATACGTTTTTTCCATTTCTGTCTCCCCTCACCCTTTATTG-GCT     49
                                                               ||.| |||
BL00735            1 ------------------------------------------ATGGAGCT      8

BSNT_04035        50 TTATTTCATCTTATCATTGCTTTATTAAGGT-AATTTTAAAGAAATGTAA     98
                     ||||.||                  .||||| ||||    ||       |
BL00735            9 TTATATC------------------GAAGGTGAATT----AG-------A     29

BSNT_04035        99 AGATCATATGAA--------TCCGATATATAGTAAAATGAGAGAAAAAAA    140
                     |||.||||.|||        .|||                      ||||
BL00735           30 AGAGCATAGGAAGCTGCCGCACCG----------------------AAAA     57

BSNT_04035       141 GGGAGAGAGTCACATTAAGACACGCAGCAACATCCCGCTTATTATGTTTG    190
                     |                                        ||.||||||
BL00735           58 G----------------------------------------TTTTGTTTG     67

BSNT_04035       191 CCCT----GCTGGTCTTCTTCGG--CGGCG----CCATC-----TAT--T    223
                     ||.|    ||||.|.|.||..||  ||| |    |||||     |||  |
BL00735           68 CCATTTTGGCTGTTTTGCTAGGGTCCGG-GATTACCATCGGATATATCGT    116

BSNT_04035       224 GGAT-----GTTATTTTCACTAAAAAACGTTCCGAAAGGCAAT-------    261
                     |.||     .||.|.|||..|.||..|..|.||||||||.|||       
BL00735          117 GTATACGCATTTTTATTCGATGAATCATCTGCCGAAAGGAAATTGGTTTC    166

BSNT_04035       262 -CTCGTCCAATCGGTT----GAATCGCCGGACGGCAGCTATACGTTAAAC    306
                      .||.||    |||||    |||||         .||| ||||    |||
BL00735          167 AGTCTTC----CGGTTCGCCGAATC---------AAGC-ATAC----AAC    198

BSNT_04035       307 ACT---TATGTAT---------------------CCGAAAACACCTTGAG    332
                      ||   |.|||||                     .||||..|.||||..|
BL00735          199 -CTGAATTTGTATAGAGTGAACAAAGGCGGGGGAACGAACTCCCCTTCCG    247

BSNT_04035       333 CTTAGATG--------CA------GCCAGAGGTGAAC-------------    355
                      |.|||.|        ||      ||||..|||||||             
BL00735          248 -TCAGAGGGGAATTGACAACGGTTGCCACCGGTGAACGAAAGAATATCTA    296

BSNT_04035       356 TT--GTAAATGAAAAAACACTTGTCAAGAGAACAATCTACTGGAATTACC    403
                     ||  |.|.|.|||.||..||.||.|||      ||||.|.|||      |
BL00735          297 TTGGGGATACGAAGAAGAACATGCCAA------AATCGAATGG------C    334

BSNT_04035       404 CGGACAGCCGCCCAGCAGTGACGTGGGTCAATCACCATACA--GTGAAAA    451
                     .|||||          |.|..|.||.|||.||||.|| |||  |||    
BL00735          335 AGGACA----------AATACCATGTGTCCATCAACA-ACAATGTG----    369

BSNT_04035       452 TC-GGCAATCAGACTTTACATCTTGATACTGATGAAACGTATGATTGGCG    500
                      | ||...|||||              ||||||   |..||||||.|..|
BL00735          370 -CTGGACGTCAGA--------------ACTGAT---ATATATGATGGAAG    401

BSNT_04035       501 AAAAGA-TGATCATTGGATCCGTGAAGAACCGCCGCAGGCGTCAGTGAGG    549
                     ||.||| |||                                        
BL00735          402 AAGAGAGTGA----------------------------------------    411

BSNT_04035       550 TGA    552
                        
BL00735          411 ---    411


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