Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04929 and BL00727
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:07
# Commandline: needle
# -asequence dna-align/BSNT_04929.1.5803.seq
# -bsequence dna-align/BL00727___liaG.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04929-BL00727___liaG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04929-BL00727___liaG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04929
# 2: BL00727___liaG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1011
# Identity: 511/1011 (50.5%)
# Similarity: 511/1011 (50.5%)
# Gaps: 285/1011 (28.2%)
# Score: 1058.5
#
#
#=======================================
BSNT_04929 1 ATGAAAAAAATGCTTGGCAAACTGTTGATCACTGCCGGTATTCTGGT--T 48
||||||||||.|.||||.||||||.||||||..|||||.|||||..| |
BL00727___lia 1 ATGAAAAAAACGGTTGGAAAACTGCTGATCATCGCCGGCATTCTCATCCT 50
BSNT_04929 49 TGTTTCGCTGTTGTCGTAAAAG--ATG-TGTTT-----GC-TGCAGGCCT 89
|| .|| ||| ||||| || ||.||||.|
BL00727___lia 51 TG-----------------CAGGCATGATGTTTAATGGGCGTGAAGGCTT 83
BSNT_04929 90 GGGTTTCATAAATGGCATAGAAGCCGATTCAGCCAGCGCATCGC------ 133
...||||.| .|||.|.||.|..||.||||||.||.|||..|
BL00727___lia 84 TTCTTTCTT---CGGCTTCGATGAAGAGTCAGCCCGCACATATCATGCAC 130
BSNT_04929 134 -CGCGG--GACATTGACAGCATGGTCATTGAGTC-----GGATAGCAAGG 175
.|||| |||||.||.|..||.|.||||||..| |.|||.||
BL00727___lia 131 AGGCGGAAGACATCGATAAAATTGACATTGATGCAAAGAGTATAACA--- 177
BSNT_04929 176 ATGTCCGGATTATAGCGGAAGAACGAAGTGACATATCGGCAGGCATTTCA 225
|||...|||..|||.|||.|.||...|||.|||...||.|..||||||
BL00727___lia 178 --GTCAACATTCAAGCTGAAAACCGCGATGATATAAAAGCCGAGATTTCA 225
BSNT_04929 226 GGAGACTCAGGAAA--------GTTATTTGT-------------TACTGA 254
|||.| ||| .|.|||.|| ||||
BL00727___lia 226 GGAAA------AAACGTCCGGCTTGATTCGTCCGAACAGGGGCGTACT-- 267
BSNT_04929 255 AAACAAAAGAAAACTGGAGCTGACCGTAAAGGAAAAAGAATTTCAATTTT 304
||..||||..||| .||| ||
BL00727___lia 268 -------------CTTCAGCTTTCCG---------------CTCA---TT 286
BSNT_04929 305 TGAATGG-GTTTAACCGTTCAACT--------------CTTATCGTCAGG 339
.|||.|| .|||..|||||...|| ||.||.||||.|
BL00727___lia 287 CGAAAGGCTTTTGGCCGTTTTTCTGGAAGAAAAATGAGCTGATTGTCAAG 336
BSNT_04929 340 CTTCCGTATGATTATAAAGGTGATCTGGC-AGTAC-----GAACC----- 378
.|.||.|.|||.|||||||.|||||||.| |.|.| |||.|
BL00727___lia 337 ATCCCTTCTGAATATAAAGATGATCTGTCGATTTCTTCTGGAAGCGGAAA 386
BSNT_04929 379 --TCAA--------GCGGCGACTTGTCTGTGGCCGGGAATGACCATCTTG 418
|||| |||||| ||||| ||| |||
BL00727___lia 387 TGTCAAACTGTCCGGCGGCG----GTCTG--------------CAT-TTG 417
BSNT_04929 419 CGCTTTCCGGGCTGAACGCAGTATCTGCGAGCGGAAATACGAGCGTGACG 468
||...|...|.||.||.| ||.|..||||| .|||.|.|.|
BL00727___lia 418 CGAAATGTAGCCTTAAAG-----TCGGGAAGCGG------CAGCCTCAAG 456
BSNT_04929 469 GACGTACG-CCTTC------AAGACC------TGAAAGTGAAGGCATCAT 505
|.|| |.| ||||| |||||| |.||||.||.|.||..||
BL00727___lia 457 GCCG-ATGACCTTCAGGCGGAAGACCTTTCTGTAAAAGGGACGTCAGGAT 505
BSNT_04929 506 CGGGGGATGTTTCCATTTCAAATACCGTCTCTAAAA----CAGCCGGCA- 550
||| ||| |.||..|||| ||..|||||
BL00727___lia 506 CGG--------------TCA------GGCTGGAAAACGTTCAAACGGCAG 535
BSNT_04929 551 ---TTGAT-TTAGCT-----TCAGGGGACGCAAATCTGGTTCATGTATCA 591
.|||| |..||| ||.||..|..||||.||.|...||||..|.
BL00727___lia 536 CTGCTGATATCCGCTCCACATCCGGTAATACAAAACTTGAAAATGTCACC 585
BSNT_04929 592 GGC--TCTCTTGATGTGAAAATGACTTCAGGAGATTTTAATGCTGTATTG 639
||| .|||...| |.|||..||||||.||..||||....|||...||.
BL00727___lia 586 GGCAAACTCAGCA--TCAAACAGACTTCGGGCAATTTGCGCGCTTCCTTT 633
BSNT_04929 640 AAAAAGGTAACCGGTCCCGTATCTG----TCACGCTGACAAGCGGTGATG 685
|.|.||.|.|.||.| |.|||| |||..|.||||..|||..|..
BL00727___lia 634 ACAGAGATCAACGAT----TCTCTGAGCATCAAACAGACATCCGGAAACA 679
BSNT_04929 686 CTAATGTAAGCCTTCCCCAAAACGGCTGCTTTGCAGTCAATGCTTTA--- 732
|.||..|.|||||.|||.|..|.|.|..|.| |||| |||.|
BL00727___lia 680 CCAAGCTCAGCCTGCCCGATGATGCCGACAT--CAGT-----CTTGAAGC 722
BSNT_04929 733 ----TCAGCAAGCGGATACGTCAGTTCGCCGTATTCATTTGCTGACAAAG 778
||..||||||||.||.|||||....|.|||||||| ||||.|||
BL00727___lia 723 CGAGTCGACAAGCGGAAACATCAGTCATTCCTATTCATT---TGACCAAG 769
BSNT_04929 779 -CACATAAAGAACAGCATCACATCACAGGCACGC------------AAGG 815
|.| .||.||..||| |.|||| ||||
BL00727___lia 770 TCGC-CAATGAGAAGC------------GGACGCTGACTGGAAAAAAAGG 806
BSNT_04929 816 AAGCGGCCGGCATCCAATCGACATC---AAAACGGACAGCGGGGATCTAG 862
||..||.....||..|||||||||| |..||| ||||||.||.|..
BL00727___lia 807 AAATGGAAAAAATAAAATCGACATCTCAATTACG---AGCGGGAATGTCT 853
BSNT_04929 863 CGATACGGTAG 873
|.||...|||.
BL00727___lia 854 CAATTGAGTAA 864
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