Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04932 and BL00726
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:07
# Commandline: needle
# -asequence dna-align/BSNT_04932___yvqH.1.5803.seq
# -bsequence dna-align/BL00726___liaH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04932___yvqH-BL00726___liaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04932___yvqH-BL00726___liaH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04932___yvqH
# 2: BL00726___liaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 721
# Identity: 508/721 (70.5%)
# Similarity: 508/721 (70.5%)
# Gaps: 80/721 (11.1%)
# Score: 1759.0
#
#
#=======================================
BSNT_04932___ 1 ATGGTATTAAAAAGAATCAGAGATATGTTTGTTGCGTCAGTTCATGAAGG 50
||||..|||||||||||||||||.||||||||.||.|||||..|||||||
BL00726___lia 1 ATGGCTTTAAAAAGAATCAGAGACATGTTTGTCGCATCAGTAAATGAAGG 50
BSNT_04932___ 51 ACTTGATAAAATGGAGAATCCAAAGGTGATGCTGAATCAATATGTACGCG 100
|.|.||||||.|||||||.|||..||||||||||||||||||.|||||||
BL00726___lia 51 ATTGGATAAACTGGAGAACCCACGGGTGATGCTGAATCAATACGTACGCG 100
BSNT_04932___ 101 ATATGGAAAGCGACATCGCAAAAGCAAAGCAAACAATTGTGAAACAGCAC 150
|.|||||||||||.|||||.||.||.|||||.||.||.||.||.|||||.
BL00726___lia 101 ACATGGAAAGCGATATCGCCAAGGCGAAGCATACCATCGTCAAGCAGCAG 150
BSNT_04932___ 151 ACGATTGCCTATCAATTT--AAGAAAAAATATGAAGAAGCCGCTGAAG-T 197
||.||||...|| |.||| |||.||||.| .|||||||||| ..||| |
BL00726___lia 151 ACAATTGAACAT-AGTTTTAAAGGAAAAGT-GGAAGAAGCCG-AAAAGCT 197
BSNT_04932___ 198 GGCTGGCAAACGGAAAAATCAGGCACAGCTCGCATTTGACGCGGGTGAAG 247
.||||.|||.||.|.|||.|||||.||||||||.|||||.||||||||||
BL00726___lia 198 TGCTGTCAAGCGAAGAAACCAGGCTCAGCTCGCTTTTGATGCGGGTGAAG 247
BSNT_04932___ 248 AAGAACTGGCGAAAAAGGCGCTGACTGAAATGAAGTATTTAGAAGGGAAG 297
|||||||.||.|||||||||||..|.||||||||||||||.||||..||.
BL00726___lia 248 AAGAACTTGCTAAAAAGGCGCTCTCAGAAATGAAGTATTTTGAAGAAAAA 297
BSNT_04932___ 298 GCGGCTGAGCATA-----AAGCT-TCCTATGAACAGGC-AAACAGTCAGC 340
||.||||| ||| |.||| .|| |.||.|| |||.|| ||||
BL00726___lia 298 GCTGCTGA--ATACAAGGACGCTCACC----AGCACGCGAAAAAG-CAGC 340
BSNT_04932___ 341 TGGCTGATCTGAAAGAGCAGCTGGCTGCACTTGAAACAAAGCTTCAGGAC 390
|.|||||..|.||.||.|||||||...|||||||....||.||.|..||.
BL00726___lia 341 TTGCTGAATTAAAGGAACAGCTGGAGACACTTGAGGTTAAACTGCGCGAT 390
BSNT_04932___ 391 GTAAAGGATAAAAAACAGGCGCTGATTGCGCGGGCAAATGCGGCGAAAGC 440
.|.||.||...|||.||.||||||||.||..|||||||.||||.||||||
BL00726___lia 391 ATCAAAGACCGAAAGCATGCGCTGATCGCCAGGGCAAACGCGGTGAAAGC 440
BSNT_04932___ 441 TAAAGAGCATATGAATACGACATTTGACAAAATTGACAGTGAAAGCGCGT 490
.|||||.|||||||||.|..|||||.|.|||||.|||||.||||||||.|
BL00726___lia 441 GAAAGAACATATGAATGCATCATTTAATAAAATCGACAGCGAAAGCGCCT 490
BSNT_04932___ 491 ATCGTGAATTTTTACGTGTTGAAAATCGTATTGAAGAAATGGAA------ 534
|.||.||||||.|..|..|.|||||.||.||||||||.||||||
BL00726___lia 491 ACCGGGAATTTATGAGAATGGAAAACCGGATTGAAGAGATGGAAACAAGG 540
BSNT_04932___ 535 ---ATCCGC---GC-GAATTA-----TTCA--AAGTCAGCGGAAGCCGGC 570
|.|.|| || |||||| |||| ||| ||||..|..|.|.|
BL00726___lia 541 GTGAACAGCTATGCTGAATTATCAGCTTCATCAAG-CAGCCCATTCGGCC 589
BSNT_04932___ 571 GCAGAACTTACACGTAAAGAATTCGCAGACGATGTGGAAGCAGAGATTGA 620
|| ||| ||||..|||.|.||.|||||||.||||.|.||
BL00726___lia 590 GC----CTT---------GAATATGCAAAAGAAGTGGAAGAAGAGCTGGA 626
BSNT_04932___ 621 AAAAATGCGGACACTTTCACTGCAAAAATCAGAC-------------CAG 657
|||||||.|| ||.|||| |||| |||
BL00726___lia 627 AAAAATGAGG-----------GCTAAAA--AGACAGGCTTGGAAAAGCAG 663
BSNT_04932___ 658 ACACAAGCGGCAAATGAATAA 678
||||..||||.|||||.||||
BL00726___lia 664 ACACCTGCGGGAAATGCATAA 684
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