Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02099 and BL00712
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:35
# Commandline: needle
# -asequence dna-align/BSNT_02099___uxaA.1.5803.seq
# -bsequence dna-align/BL00712___uxaA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02099___uxaA-BL00712___uxaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02099___uxaA-BL00712___uxaA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02099___uxaA
# 2: BL00712___uxaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1600
# Identity: 1058/1600 (66.1%)
# Similarity: 1058/1600 (66.1%)
# Gaps: 215/1600 (13.4%)
# Score: 3291.5
#
#
#=======================================
BSNT_02099___ 1 TTGAAGTCGTTTAT-AAAGA----TTCATAA-------GCAAGATAATAT 38
|| ||||| ||.||.| .|||||||||.|
BL00712___uxa 1 ------------ATGAAAGACTGCTTGATGATCAATCCTCAAGATAATGT 38
BSNT_02099___ 39 CCTTCTTGCTCTGCGGGATATCCAAAAGGGAGAGAGGCTGCA-TGCGGAC 87
|....|||| |.|| ||||| | |||.|||
BL00712___uxa 39 CGGCATTGC-------GTTA----------AGAGA------ATTGCAGAC 65
BSNT_02099___ 88 GG------CG-----TGTC---GATTGAA-----GT----AAAGAA-TGA 113
.| || |||| ||..||| || ||.||| .||
BL00712___uxa 66 CGGTGAAACGGTCACTGTCGGAGAACGAACCATCGTGATCAAGGAACCGA 115
BSNT_02099___ 114 TATAAAAAGAGGCCATAAGATTGCATT-GCAGTCTATCAAAGAAAACGAC 162
|.|..|| ||||||||||.||||.|| ..||.| |||...|||||.||.
BL00712___uxa 116 TTTTGAA--AGGCCATAAGTTTGCTTTAAAAGAC-ATCGCTGAAAATGAA 162
BSNT_02099___ 163 AGCATCATCAAGTACGGGTTTCCAATCGGTCATGCATCAC----AAGATA 208
|.|.|||||||.|||||.|||||.|||||.||.|| ||| |.|||
BL00712___uxa 163 AACGTCATCAAATACGGCTTTCCGATCGGGCACGC--CACTGAAATGAT- 209
BSNT_02099___ 209 TCTC-GATCGGAGA------GCATATTCATGTCCATAATACGAAAACAAA 251
|| ||..||||| ||| ||.| .|.|||..||||||.||
BL00712___uxa 210 --TCAGACGGGAGAGTGGGTGCA----CACG--AAAAATGTGAAAACGAA 251
BSNT_02099___ 252 CCTGTCTGATATCCAATCATACAGCTATACACCGAGATTTGATGAAAATC 301
..||...|.|.||.||..|||||||||.|..|||| |.||.|.|.|||.|
BL00712___uxa 252 TTTGGGCGGTGTCGAAGAATACAGCTACAAGCCGA-AGTTTACGGAAAAC 300
BSNT_02099___ 302 CG-TATTCTAATGAGAACCG--GACGTTTAAAGGTTTTAGAAGAGAAAAC 348
|| ||| .||..||||||| .||.||||||||.||||.|.||.||.||
BL00712___uxa 301 CGCTAT--CAAAAAGAACCGCTTACATTTAAAGGCTTTAAACGAAAAGAC 348
BSNT_02099___ 349 GGAGATGCGGGTGTACGGAATGAATTGTGGATTGTCCCAACTGTCGGCTG 398
|||.|..|.||..|..|.||.||..|.|||||.|||||.|||||||||||
BL00712___uxa 349 GGAAAAACCGGGATCAGAAACGAGCTATGGATCGTCCCGACTGTCGGCTG 398
BSNT_02099___ 399 TGTCAATGGAATAGCAGAAAAAATGCTG--CAGCGTTTTGTCAGAGAA-- 444
|||.|||||.||.||||| |||| || |||.||||
BL00712___uxa 399 TGTAAATGGCATTGCAGA------GCTGATCA--------TCAAAGAATT 434
BSNT_02099___ 445 -ACAGG--------GGAT--ATCGCTCCATTTGATAACGTACTGGTGTTA 483
| ||| ||.| |||||.||.|||||.|.|||.|..||.|||
BL00712___uxa 435 TA-AGGCTGAGGTCGGCTCCATCGCCCCTTTTGAAAGCGTTCACGTATTA 483
BSNT_02099___ 484 AAGCATCAATACGGATGCTCGCAGCTTGGCGATGATCACGAAAATACGAA 533
||||||||.|||||.||.||.|||||||||||.|||||....||.||||
BL00712___uxa 484 AAGCATCAGTACGGCTGTTCACAGCTTGGCGACGATCATATCAACACGA- 532
BSNT_02099___ 534 GCAA--ATCCTGCTGAATGCCATTCGCCATCCAAATGCCGGCGGCGTCTT 581
.|| ||..||..|||||||.|...|||.||.|||||.|||||.|||.|
BL00712___uxa 533 -GAACGATTTTGGCGAATGCCGTCAACCACCCGAATGCAGGCGGTGTCCT 581
BSNT_02099___ 582 GGTGTTAGGGCTTGGCTGTGAAAACAATGAGCTGGCAAGAATGAAG-GAA 630
.|||.|.|||||.|||||||||||||| .|||...||.||||...| |||
BL00712___uxa 582 TGTGCTGGGGCTCGGCTGTGAAAACAA-CAGCATTCACGAATTCCGCGAA 630
BSNT_02099___ 631 GCACT--GC----AAGATGTGAACCTGGAG-CGGGTGAAGTTTCTGGAAT 673
||.|| || |.||| .|| || |||||.|||||||||...|
BL00712___uxa 631 GCGCTCGGCGATTACGAT---CAC----AGCCGGGTCAAGTTTCTGCTTT 673
BSNT_02099___ 674 CCCAGTCGGTGACCGACGAAATGGAGGCAGGTGTTGCTTTGCTGAAGGAA 723
||||...|||..|..|||||.|...||.|||.||.....||.|.||||||
BL00712___uxa 674 CCCAAGAGGTATCAAACGAAGTCACGGAAGGCGTCAAACTGTTAAAGGAA 723
BSNT_02099___ 724 ATTCATGAAGC-GGCCAAAGGAGATAAGAGAGAAGACATTCCGCTGTCTG 772
|||.|| |||| .||.|||||.||..|..|.|||||..|||||||.||||
BL00712___uxa 724 ATTTAT-AAGCATGCAAAAGGTGACCACCGCGAAGATGTTCCGCTTTCTG 772
BSNT_02099___ 773 AACTGAAGATCGGGCTGAAATGCGGAGGTTCGGACGGTTTTTCCGGCATA 822
|||||||.|||||..||||.|||||.||.||.||.||.|||||||||||.
BL00712___uxa 773 AACTGAAAATCGGTTTGAAGTGCGGCGGATCTGATGGATTTTCCGGCATT 822
BSNT_02099___ 823 ACCGCAAACCCGCTGCTTGGACGTTTTTCAGATTATCTCATTGCACAGGG 872
|||||.|||||||||||.||.||..|.||.||||.|||.||.||.||.||
BL00712___uxa 823 ACCGCGAACCCGCTGCTCGGCCGGCTCTCCGATTTTCTGATCGCCCAAGG 872
BSNT_02099___ 873 AGGGAGC-ACGGTGCTGACGGAAGTACCGGAAATGTTCGGCGCAGAAACC 921
||||.| .|||||.||||.|||||.||.||||||||.||.||||||||.
BL00712___uxa 873 -GGGAACGGCGGTGTTGACAGAAGTGCCTGAAATGTTTGGGGCAGAAACG 921
BSNT_02099___ 922 ATCCTGATGCAGCGGGCTGCCAATGAAGAAGTGTTTCATAAGATAGTCGA 971
.|..|||||.|||||||||..|||||.||||||||||||||.||.|||..
BL00712___uxa 922 CTATTGATGGAGCGGGCTGAAAATGAGGAAGTGTTTCATAAAATTGTCCG 971
BSNT_02099___ 972 TTTAATCAATGATTTCAAACAATACTTTATTAA--ACATGATCAGCCGGT 1019
.||||||||.|||||.|||||.||||||||..| |||.| |||||.||
BL00712___uxa 972 CTTAATCAACGATTTTAAACAGTACTTTATCGATCACAGG--CAGCCCGT 1019
BSNT_02099___ 1020 GTACGAAAATCCCTCACCGGGCAACAAAGCGGGCGGCATTTCTACACTTG 1069
.||.|||||.||.||.|||||.||||||||||||||||||.|.|||.|.|
BL00712___uxa 1020 CTATGAAAACCCGTCTCCGGGAAACAAAGCGGGCGGCATTACGACATTGG 1069
BSNT_02099___ 1070 AGGATAAATCGCTGGGCTGTACGCAAAAAGCGGGGATTTCTCCTGTCACG 1119
|.|||||||||||.|||||||||||||||||.||.|.|||....||..||
BL00712___uxa 1070 AAGATAAATCGCTCGGCTGTACGCAAAAAGCCGGCACTTCAAAGGTGGCG 1119
BSNT_02099___ 1120 GATGT-CTTGAAATACGGGGAAGTGCTCAAGACAAGAGGGCTGACGCTTT 1168
||||| |||| ||||||||||.||..|.||.|..|.||||||||..||..
BL00712___uxa 1120 GATGTCCTTG-AATACGGGGACGTTTTGAAAAAGAAAGGGCTGAACCTGC 1168
BSNT_02099___ 1169 TGAGCGCGCCAGGCAATGA-TTTGATCGCCTCCTCCGCATTGGCGGCGGC 1217
||||.||.||.||.||||| .||| |.||.||.||||||.||||.||.||
BL00712___uxa 1169 TGAGTGCTCCGGGAAATGACCTTG-TTGCTTCATCCGCACTGGCCGCTGC 1217
BSNT_02099___ 1218 CGGCTGCCAAATTGTCCTCTTTACAACGGGGAGAGGCACGCCGTTTGGCA 1267
.||.||.|||||.||..|.|||||.||.||..|.||.||.||.|||||||
BL00712___uxa 1218 AGGGTGTCAAATCGTTTTATTTACGACAGGACGGGGAACTCCTTTTGGCA 1267
BSNT_02099___ 1268 GCTTTGTCCCGACGGTGAAAGTAGCGACAAACACCGAGCTGTATGAAGCG 1317
.||||||.||||||.|||||.|..|||||||.||.|.|.|.|||||.||.
BL00712___uxa 1268 CCTTTGTGCCGACGATGAAAATTTCGACAAATACGGCGATTTATGAGGCA 1317
BSNT_02099___ 1318 AAGCCGCATTGGATTGATTTTAA---------------CGCAGGCCTTTT 1352
||||..||||||||.|||||||| ||.||.|| .
BL00712___uxa 1318 AAGCGCCATTGGATCGATTTTAATGCGGGAAAGGTGCTCGAAGACC---G 1364
BSNT_02099___ 1353 AGCAGAGGATGATGTTCATG-AGGAATATGTGCTGCGTGAGTTTATCCAC 1401
|.||||.|||||.||| .|| |||| |||| ||
BL00712___uxa 1365 ATCAGAAGATGACGTT-TTGAAGGA------GCTG-------------AC 1394
BSNT_02099___ 1402 ----TATATGGTTGAGGTGGCAAGCGGC---CAGCTTGTGAACCATGAAA 1444
|||.||.|.||.||.||||||||| |||| |||||.||||.|
BL00712___uxa 1395 AGCGTATTTGATCGAAGTCGCAAGCGGCAGGCAGC---TGAACAATGAGA 1441
BSNT_02099___ 1445 AAAATGATTTCAGAGAACTCGCCATTTTTAAATCGGGTGTGACGCTATAA 1494
.|||.||||||||.||.||.||.||.||||||.|.||.||.||..|||||
BL00712___uxa 1442 TAAACGATTTCAGGGAGCTTGCGATATTTAAAACAGGCGTCACATTATAA 1491
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