Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02098 and BL00711
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:35
# Commandline: needle
# -asequence dna-align/BSNT_02098___uxaB.1.5803.seq
# -bsequence dna-align/BL00711___uxaB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02098___uxaB-BL00711___uxaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02098___uxaB-BL00711___uxaB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02098___uxaB
# 2: BL00711___uxaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1645
# Identity: 935/1645 (56.8%)
# Similarity: 935/1645 (56.8%)
# Gaps: 377/1645 (22.9%)
# Score: 2216.5
#
#
#=======================================
BSNT_02098___ 1 ATGCAGAAACTGAATAAA-----AATGTGTA---CGATCACTATACTCGG 42
|||.|||..|||...||| ||.||.|| |||.| ||
BL00711___uxa 1 ATGGAGAGGCTGTCCAAACGGATAAGGTCTAAGCCGAGC--------CG- 41
BSNT_02098___ 43 TATCCAGAAAAAATTCTCCAATTCGGAGAAGGAAACTTTCTTCGGGGATT 92
.||.|||...|||.|.|||.||||.|||||.||||||.|..||||.||
BL00711___uxa 42 --CCCCGAACGGATTTTGCAAATCGGGGAAGGTAACTTTATGAGGGGGTT 89
BSNT_02098___ 93 TGTTGATTGGCAGATTGATCAATTGAATCAACACACTGATTTTAATGGGA 142
|.||||.|||||||||.||..|||||||.||.|.||.||||||||.||.|
BL00711___uxa 90 TATTGACTGGCAGATTCATAGATTGAATGAAGAAACCGATTTTAACGGCA 139
BSNT_02098___ 143 G---------CGTGGCAGTTGTCC-AGCCAAGAGGCTCAGAAAAAATCAA 182
| ||||.| ||| .||| |.||.|||| .|
BL00711___uxa 140 GTGCCGTCGTCGTGCC-----TCCGCGCC--GCGGTTCAG--------TA 174
BSNT_02098___ 183 ACG---ATTAAATCAGCAAGATGGATTATATACGCTTTTTTTACAAGGAA 229
||| .||.|| .|.||.|||||..|.||.|||||||.|.|..||||..
BL00711___uxa 175 ACGGCCTTTCAA-GAACAGGATGGGCTTTACACGCTTTATCTTGAAGGTT 223
BSNT_02098___ 230 T----GAAAGAC-GGAGAAGCCGTAAACGA----GCATATGATTATCAAC 270
| |||.||| |||| ||...||| || |.|.|||| ||
BL00711___uxa 224 TCCGGGAAGGACGGGAG-----GTTCGCGATTCTGC-TGTCATTA-CA-- 264
BSNT_02098___ 271 TCAATCAGCCGGG---------GAATTGACCTGTTTTCTGATTATGAAGC 311
|||||||||.|.| |...|||.| |||||||.|.
BL00711___uxa 265 TCAATCAGCAGAGTCGTCAGCAGCTATGAGC---------ATTATGATGA 305
BSNT_02098___ 312 ATACAAAGAATTGGC--ATCAAGCGAAAGGCTT--CGGTTTATTATCTCC 357
||..|..||..|||| |||...| ||.|| ||||||.|..|.||.
BL00711___uxa 306 ATTTATGGAGCTGGCCGATCTGCC----GGATTTGCGGTTTGTATTTTCA 351
BSNT_02098___ 358 AACACCACTGAGGCTGGGAT--TGTATGTGAT-GAAAAAGATCGTTTAGA 404
||.||.||.|||||.||.|| |.||| || ||..||||.|||.|...
BL00711___uxa 352 AATACGACAGAGGCCGGCATCATTTAT---ATCGAGGAAGACCGTCTGTC 398
BSNT_02098___ 405 GGATAGGCCGCAAAAAACATTCCCTGGGAAATTAACTGCATTTCTCTACT 454
.||..|.|||||.||||..|..||.|||||..|.||||||.||.|.|||.
BL00711___uxa 399 CGACCGTCCGCAGAAAAGCTATCCAGGGAAGCTGACTGCACTTTTATACA 448
BSNT_02098___ 455 TCCGCTTTCA-GGCTTTTAAAGGAGATCAGACAAAAGGGTGTG----TCC 499
..|| .|.|| |.|||||.||||| |.|||..||||.|||.|| |||
BL00711___uxa 449 GACG-ATACATGACTTTTCAAGGA-AGCAGGGAAAAAGGTCTGGTGATCC 496
BSNT_02098___ 500 TAATCCCATGTGAACTGATTGAGAACAACGGCGAAAA-GCTGAAGGAAAC 548
||||.|||||.|||.|||||.|.||||| ||||| .|||||.||
BL00711___uxa 497 ---TCCCGTGTGAGCTGCTTGAGGATAACGG-GAAAATACTGAAAGA--- 539
BSNT_02098___ 549 GGTTCTTCATTATGCAGGTCT----------GTGGAAGCTGGAGGAAGGA 588
||||.|||.|..|| ||||..|||.||..||||.
BL00711___uxa 540 -------CATTGTGCTGCGCTATACAAACGCGTGGGCGCTTGAACAAGGG 582
BSNT_02098___ 589 TTTACACAGTGGATTCATGAGGCCAATACATTTTGTAATA-GTTTAGTAG 637
||.|...|.|||.||.|.|||||.||....||.||.|||| |.|| ||.|
BL00711___uxa 583 TTCATCGATTGGCTTGAAGAGGCAAACGTGTTCTGCAATACGCTT-GTGG 631
BSNT_02098___ 638 ACCGGATTGTTCCGGGTTTTCCCG--------TCGACA---GCATTGATG 676
||.||||.||.||||| .|||||| |..||| || ||||.|
BL00711___uxa 632 ACAGGATCGTACCGGG-ATTCCCGAAAGAAAATGCACACCGGC-TTGAAG 679
BSNT_02098___ 677 AGATCACGGCGGATCTTGGCTATCAGGATGATTTGATAGTTGTGGGAGAG 726
| ||||| ..||||||||.|||...|||||.||...||..|||
BL00711___uxa 680 A------GGCGG---CCGGCTATCACGATTCCTTGATGGTGAAGGCGGAG 720
BSNT_02098___ 727 CAATATTATTTATGGGTTATCGAGGGGCCTGATTGGATTGGAAAAGAACT 776
|..|||.||||.|..||.||.||.|||||..|.|||.||.||.|.||.||
BL00711___uxa 721 CCGTATCATTTGTTCGTGATTGAAGGGCCGAAATGGCTTCGAGACGAGCT 770
BSNT_02098___ 777 TCC-CTT--TGCGGCTGCAGGGCTCCATACAAAGATCGT-CAGCGACCTC 822
||| ||| ||.| ||.||.||..||....||.|.|| ||| ||..|.
BL00711___uxa 771 TCCGCTTCATGAG---GCCGGTCTGAATGTCGAGTTTGTCCAG-GATGTG 816
BSNT_02098___ 823 ACCCCATACCGGACTAA-AAAAGTAAGGATTTTAAATGGCGCTCATACAG 871
||.||.|||.||| ||| ||||||.||.||||||||.|||||.|||||.|
BL00711___uxa 817 ACGCCGTACAGGA-TAAGAAAAGTGAGAATTTTAAACGGCGCCCATACCG 865
BSNT_02098___ 872 CAATGACGCCAGTGGCTTTATTATAC-GGCTTAAAAACTGTTAG------ 914
|.||||||||.||.|| |||||...| |||.|..|.||.|||.|
BL00711___uxa 866 CGATGACGCCGGTCGC-TTATTTGGCAGGCCTTGAGACGGTTCGCGAAGC 914
BSNT_02098___ 915 GGATGCTGTCGAGC--ATCCGGAAGTTGGGC-GATTTATAAGAGAGCTGA 961
||.||..|.||||| ||| ||| .||||.|.|.||||||||
BL00711___uxa 915 GGCTGAAGACGAGCTTATC---------GGCTCATTTGTGAAAGAGCTGA 955
BSNT_02098___ 962 T-----------------TGACGA-CGAAATTCTTCCTGTT-------TT 986
| .||||| ||| |.|.||.|.| ||
BL00711___uxa 956 TCCAGCGGGAGGTGCTCGAGACGATCGA---TATGCCCGATAGCGAGCTT 1002
BSNT_02098___ 987 AAAAA-----TGGAAGGTCTTTCTCAGTATGCTGACGATGTGCTGAACCG 1031
.|.|| |||||| || ||.|| || ||||
BL00711___uxa 1003 GACAACTACGTGGAAG---------AG-ATTCT--CG---------ACCG 1031
BSNT_02098___ 1032 TTTTAAAAACCCGTATATTAAGCATTACCTGGAAAGC--------ATTGC 1073
.||||||||||||| |||..|.|.|| |||| |||.|
BL00711___uxa 1032 CTTTAAAAACCCGT---TTATCCGTCAC-----AAGCTGATCGATATTTC 1073
BSNT_02098___ 1074 ATTGAGCTCCGTTTCCAAATTCAAAACGAGAAACCTGCCGAC-TCTTAA- 1121
.||.|..|||.||.|.|||||||||...|||||..|||| | ||||||
BL00711___uxa 1074 CTTAAATTCCTTTGCAAAATTCAAAGTCAGAAATTTGCC--CGTCTTAAT 1121
BSNT_02098___ 1122 GGAATATGCTGAAC-AAAAGGGACAGCTTCC----TGAACGCTTGGTGTT 1166
|||||||||.|||| ||.|||.| |.||||| .|||| .||.||
BL00711___uxa 1122 GGAATATGCGGAACGAACAGGCA-AACTTCCGGCTCGAAC----CGTATT 1166
BSNT_02098___ 1167 TTCTTTCAGCGCTCTT-CTGTATTTTTATCATAATAATGAGAC------- 1208
|.||||.||||| ||| .|.||||||||.| |||.|
BL00711___uxa 1167 TGCTTTAAGCGC-CTTAATTTATTTTTACC--------GAGGCCAACGGG 1207
BSNT_02098___ 1209 ATTGCAGGATGATCCGGC------------------------AGTGCTTC 1234
||.| |||||||..||| .|||||..
BL00711___uxa 1208 ATGG--GGATGATGGGGCCATTCCGCTGTCTGACGACGATGAGGTGCTGG 1255
BSNT_02098___ 1235 AATTTTTCAAAGAGGTTTGGTGTCA-GGAGGATGAC-GACAT-----GCT 1277
..||..|||||..|.|.||| | |||.|| ||| |||.| .|.
BL00711___uxa 1256 CTTTCCTCAAACGGCTCTGG----ACGGAAGA-GACAGACGTTTCGAACA 1300
BSNT_02098___ 1278 TCGGATTGCA---TCAAGAGTGTTAGGCGAACAGCGGCTGTGGGGGGCAG 1324
|||.|||.|| ||..|.||.|.| ||.|| ||||||||..|.
BL00711___uxa 1301 TCGCATTCCATGTTCTTGGGTTTGA----AAAAG----TGTGGGGGCAAA 1342
BSNT_02098___ 1325 ATCTCAATGAGATACC--GAAGCTGACTGATAGAGTC-GCTG----TTT- 1366
||||.||.||.||.|| || .||||.||.| ||.| |||| |||
BL00711___uxa 1343 ATCTGAACGACATGCCCGGA--TTGACGGACA-AGACGGCTGAATATTTA 1389
BSNT_02098___ 1367 ----ACTTGAATCTTATTCATGAGCTGGGCATGCAGCGGGCTCTTG-AAC 1411
||.||||.| |...|||.|||..|..|||.||.| ||.
BL00711___uxa 1390 AGGGACATGAAAC---------AAACGGGAATGAGGAAGGCGCTGGAAAA 1430
BSNT_02098___ 1412 AATACTGCATA--CAA-----------GAGGGAGAGGTACGTTGA 1443
|||..||.|.| ||| |.||||.|.|||.
BL00711___uxa 1431 AATGATGAAAAGCCAAATGGCTGAGCTGGGGGACATGTAA----- 1470
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