Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02088 and BL00709
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:34
# Commandline: needle
# -asequence dna-align/BSNT_02088___yjmB.1.5803.seq
# -bsequence dna-align/BL00709___yjmB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02088___yjmB-BL00709___yjmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02088___yjmB-BL00709___yjmB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02088___yjmB
# 2: BL00709___yjmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1447
# Identity: 977/1447 (67.5%)
# Similarity: 977/1447 (67.5%)
# Gaps: 125/1447 ( 8.6%)
# Score: 3129.5
#
#
#=======================================
BSNT_02088___ 1 ATGCGAACT------GAACTGGCAAATAAGGTTGTGTCGGTCGAAAC--- 41
||| |||.| ||||...|||| .||||||
BL00709___yjm 1 ATG-GAAATATCGACGAACAAACAAA--------------CCGAAACAGT 35
BSNT_02088___ 42 ------------GGAAAAAAGGCTTTCA-TTGAAAGAGAAAA--TGTCCT 76
.||.||| ||.| ||.||| |||||| |.||.|
BL00709___yjm 36 CGCCGTCACTCAAGAGAAA-----TTAAGTTTAAA-AGAAAAGGTTTCTT 79
BSNT_02088___ 77 ATGGCTTTGGTGATTTTGGCAACGGTTTTATGTTTGATCTCGGCCAGATT 126
|.||.|||||.||||||||.|||||.|||||||||||.||.||.|||.|.
BL00709___yjm 80 ACGGTTTTGGAGATTTTGGGAACGGATTTATGTTTGACCTTGGACAGCTC 129
BSNT_02088___ 127 TATTTATTGAAGTATTTCACTGATGTAGCGGGAATCCCCGCTGCGATGGC 176
|||.|..||||||.|||.||.|||||.||.||.||.||.||.|||...||
BL00709___yjm 130 TATCTTCTGAAGTTTTTTACGGATGTTGCCGGCATTCCGGCGGCGGCAGC 179
BSNT_02088___ 177 CGGCGGCATTTTTTTAGTCAGTAAGCTGTTTGCAGCGATAACAGATCCAA 226
|||.|||||||||.|.||.||.||.||.||.||.||..|....|||||.|
BL00709___yjm 180 CGGAGGCATTTTTCTTGTGAGCAAACTTTTCGCCGCTTTTGTCGATCCGA 229
BSNT_02088___ 227 TTGTCGGCTCATCAATCGATTATCGCAAAAACATCGGC---AAACGGGGG 273
||||.||..||||.|||||.||..|.||.||.|||||| ||| ||.
BL00709___yjm 230 TTGTGGGAACATCGATCGACTACAGGAAGAATATCGGCCCGAAA---GGC 276
BSNT_02088___ 274 AAATTCAGGCCTTATCTATTAATCGGCAGCATCGTGCTTGCGGTGCTTAC 323
|||||||||||.|||||..||..|||.|||.|.|||||||||.|..|.||
BL00709___yjm 277 AAATTCAGGCCGTATCTGCTATACGGAAGCTTTGTGCTTGCGATTTTGAC 326
BSNT_02088___ 324 TGTTCTT-ATTTTTCTGTCTCCCAATGTATCAACGACCGGAAAACTGATA 372
|.|.|| |..||..|.||.||.|||.|.|||.||||.||.|||||.||.
BL00709___yjm 327 -GATATTGACCTTCATCTCGCCGAATCTGTCACCGACGGGCAAACTCATC 375
BSNT_02088___ 373 TATGCATATGCATCCTATATGATTTGGGGCATCGGCTATTCGTTTGTGAA 422
||.||.|||||.||.||.|||.|||||||..||||||||||.|||||.||
BL00709___yjm 376 TACGCTTATGCCTCATACATGCTTTGGGGTCTCGGCTATTCCTTTGTCAA 425
BSNT_02088___ 423 TATTCCGTACGGCTCATTAGGGGCAGCGATGACTCAAAATTCTGAGGACC 472
.||.||.||||||||..|.|||||.||.|||||.|||||.||.|.|||.|
BL00709___yjm 426 CATCCCTTACGGCTCGCTCGGGGCTGCCATGACGCAAAACTCGGTGGAAC 475
BSNT_02088___ 473 GGACCTCCATTTCGACGTTCCGCCAAATCGGATCACTTGGCGCCTTGTTT 522
||||.||..||.|..|.||.||||||..|||.||.||.||||||.|||||
BL00709___yjm 476 GGACTTCGCTTGCTTCCTTTCGCCAAGCCGGCTCGCTGGGCGCCCTGTTT 525
BSNT_02088___ 523 ATCACAAGTGTGGCCGTGATGCCGCTGCTCGTCAAGTTTGATAATCCGAA 572
.|.||.||..|.|..||.||.|||.||.|.||||.||||||.||.||...
BL00709___yjm 526 GTGACGAGCATTGTTGTCATCCCGATGATTGTCAGGTTTGACAACCCTGC 575
BSNT_02088___ 573 GGTCGGCTACCCGGTGGTCATGGG--------CTTGTTCGCCGCGCTCGG 614
|||.|.|||.|||||.|||||||| |||.| ||.||
BL00709___yjm 576 GGTTGCCTATCCGGTCGTCATGGGGCTGATGTCTTTT--------CTGGG 617
BSNT_02088___ 615 TGTGTTTTGGTTTTATATTTGCTACCGCAACTGCAAAGAGCGCATTGTC- 663
||||||.|..||.||.|||||||||.|.|||||..|.||.||.||.|||
BL00709___yjm 618 TGTGTTGTTTTTCTACATTTGCTACAGGAACTGTCAGGAACGGATCGTCG 667
BSNT_02088___ 664 ----ATATCGGAAGCACCCAAA---GAAAAATTAACACTCTCATCTGTCG 706
|.||..||||.| |||| ||||||.|.|||.||..|.| |...
BL00709___yjm 668 TAAAAGATGAGAAGTA--CAAACAGGAAAAAGTGACATTCAAAGC-GATT 714
BSNT_02088___ 707 TCAAA-ACATTTATTACAAATAAACCGCTGTTAACCCTTGTCCTGATGAC 755
||||| ||.|||.||||.||.||.|||||..|.||.||..|..|.|||||
BL00709___yjm 715 TCAAAGACGTTTTTTACGAACAAGCCGCTCCTTACGCTAATATTCATGAC 764
BSNT_02088___ 756 GATTTTTTCAATTTCCGCATACAACATTAAATCCGCCATGCTCGTCTATT 805
.||||||.|.|||||.||.||.|||.||||||||||.|||||..|.||||
BL00709___yjm 765 AATTTTTACGATTTCAGCCTATAACCTTAAATCCGCGATGCTGATTTATT 814
BSNT_02088___ 806 TCGCACAATATAACTTGGGCAATGTTGAATTAATGGCTTATATGAACTTC 855
||||.||.||||||.|.||.||.|..|||.|.|||||.||.|||||.|||
BL00709___yjm 815 TCGCGCAGTATAACCTCGGGAACGCCGAACTGATGGCCTACATGAATTTC 864
BSNT_02088___ 856 ATCATTATTGGTTCTTCCTTTTTGGGCGTCGTATTCCTACCAAAGCTCGT 905
|||||.||.||.||.||||||.|.||||||.|..|.||.||.||||||||
BL00709___yjm 865 ATCATCATCGGCTCATCCTTTATCGGCGTCATCATGCTGCCGAAGCTCGT 914
BSNT_02088___ 906 CAAGATGTTTGGAAAGAAACGAACGGCAAT------GATCGGCTTCGGCA 949
.|||.|.|||||.||.||.|..||.||.|| |.||| |||..
BL00709___yjm 915 GAAGCTTTTTGGGAAAAAGCATACCGCCATTTTGGGGCTCG----CGGTT 960
BSNT_02088___ 950 TCAGTGTG-GCCGCGGATCTGATCAACTTTATGCTTC-CATC---TAACG 994
||.||.|| ||| |||||||||||.||| ||| ||.| .||.|
BL00709___yjm 961 TCTGTCTGTGCC---GATCTGATCAATTTT----TTCGCACCGGGCAATG 1003
BSNT_02088___ 995 TTTATGTGTTTACAATTCTCGCCAGTATCGCCTTTATCGGAATCAGTATC 1044
|.|.|||.|||||.||||||||.||.||||||||.|||||.|||||.||.
BL00709___yjm 1004 TCTTTGTTTTTACGATTCTCGCAAGCATCGCCTTCATCGGCATCAGCATT 1053
BSNT_02088___ 1045 CCAAATGGCATCACGTGGGCTCTTGTCTCCGATATTATCGACTATGGCGA 1094
||.||.||.|||||.|||||..|.||.||.|||...|||||.||.|||||
BL00709___yjm 1054 CCGAACGGAATCACCTGGGCATTCGTATCAGATGCGATCGATTACGGCGA 1103
BSNT_02088___ 1095 ATGGAAATCCGGTGAACGGAAGGAAGCAACGACATATTCACTTTTCAATT 1144
.||||.|.|.||.||||||||.||||.||||..|||.||.||.||.||||
BL00709___yjm 1104 GTGGAGAACAGGGGAACGGAAAGAAGGAACGGTATACTCGCTGTTTAATT 1153
BSNT_02088___ 1145 TCTCAAGAAAGCTTGCTCAATCTTTGTCTGGCTTTCTCTCGGGGATCGGT 1194
|.||.||||||||.|||||.||..|.||.|||||.||.||.|||||||||
BL00709___yjm 1154 TTTCGAGAAAGCTGGCTCAGTCGCTCTCCGGCTTCCTGTCAGGGATCGGT 1203
BSNT_02088___ 1195 TTGGGGATTATCGGCTATGTGCCGAATGCAGTCCAGACAGCACAGGCGCT 1244
.|..|.||.||||||||||||||||||||.|.|||.|.|||...|.||||
BL00709___yjm 1204 CTCAGCATCATCGGCTATGTGCCGAATGCGGCCCAAAAAGCGGGGACGCT 1253
BSNT_02088___ 1245 GATTGGCATCAAAGCGCTGCTTCTTCTGTATCCGGC--CATTGCT-TTGG 1291
|.|.|||||.||||||.|.||.|||.|||||||||| ||..||| ..||
BL00709___yjm 1254 GCTCGGCATTAAAGCGATTCTCCTTTTGTATCCGGCAGCAGCGCTGACGG 1303
BSNT_02088___ 1292 CATTAGCGATGTTCATTATCGGCTTTCTTTATAAAC----TCACAGACCA 1337
| .||.||..||.||.||||||..||.| || |.||.||.||
BL00709___yjm 1304 C---GGCCATTCTCGTTCTCGGCTACCTGT----ACCGTTTGACGGATCA 1346
BSNT_02088___ 1338 GCAGCATGCTCAGATCGTTCAGGATCTTCATCAAA---AGAGCTGA- 1380
|.||||.||..|.||.||...||| .|||||| |||.|..|
BL00709___yjm 1347 GAAGCACGCCGAAATGGTCGCGGA----AATCAAAGCGAGAACATAG 1389
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