Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04971 and BL00702
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:09
# Commandline: needle
# -asequence dna-align/BSNT_04971___yvsH.1.5803.seq
# -bsequence dna-align/BL00702___yvsH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04971___yvsH-BL00702___yvsH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04971___yvsH-BL00702___yvsH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04971___yvsH
# 2: BL00702___yvsH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1449
# Identity: 1049/1449 (72.4%)
# Similarity: 1049/1449 (72.4%)
# Gaps: 84/1449 ( 5.8%)
# Score: 3673.0
#
#
#=======================================
BSNT_04971___ 1 ATGGAACAGACAAAAAAATGGGGTTTTTGG-TTATTAACGGCGTTTGTCG 49
|||||||||||||||||||||||.||.||| ||.|| |||||.|||||.|
BL00702___yvs 1 ATGGAACAGACAAAAAAATGGGGCTTCTGGCTTCTT-ACGGCTTTTGTTG 49
BSNT_04971___ 50 TTGGAAATATGGTTGGATCAGGAATTTT----CTCCTTGCCGAGCTCGCT 95
|.||.||||||||.||.|||||.||||| ||| ||.|||.|.||
BL00702___yvs 50 TCGGCAATATGGTCGGCTCAGGGATTTTTATGCTC----CCCAGCACACT 95
BSNT_04971___ 96 TGCTTCA-ATTGCGAGTCCGTTTGGAGCTACGTCCGCCTGGCTTTTGACA 144
.|| .|| |..||.||.|||.|.||.|..|||.|.||.|||||..||||.
BL00702___yvs 96 CGC-CCAGACGGCTAGCCCGCTCGGCGTAACGGCGGCATGGCTGGTGACG 144
BSNT_04971___ 145 GGTGCCGGCGTGCTGATGATTGCACTTGTGTTCGGACATTTGTCCATTCG 194
|||||.||.|||||||||||.||.|||||.|||||.|||||.||||||||
BL00702___yvs 145 GGTGCGGGGGTGCTGATGATCGCCCTTGTATTCGGCCATTTATCCATTCG 194
BSNT_04971___ 195 CAAGCCTGAACTGACAGCGGGACCGCAAAGTTATGCAAGAGCGCTGTTTT 244
|...||.||.||.|.|||.||.||||||||.|||||||||||..|.||.|
BL00702___yvs 195 CCGCCCGGATCTCAAAGCAGGTCCGCAAAGCTATGCAAGAGCTTTATTCT 244
BSNT_04971___ 245 CTGACCCGAAAAAAGGCAACGCTGCCGGTTTCACAATGGTGTGGGGCTAC 294
|.|||||.||||||||.||.||.||.|||||.||||||||.|||||.||.
BL00702___yvs 245 CAGACCCTAAAAAAGGGAATGCGGCAGGTTTTACAATGGTATGGGGGTAT 294
BSNT_04971___ 295 TGGGTGGCGAGCTGGATCAGTAACGTGGCGATCATCACAAGTCTCGCCGG 344
||||||||.|||||||||||.||||||||.|||||.|||||.||.||.||
BL00702___yvs 295 TGGGTGGCTAGCTGGATCAGCAACGTGGCCATCATTACAAGCCTTGCAGG 344
BSNT_04971___ 345 TTACTTGACTTCGTTCTTCCCGATCTTGGTTGATAA-------ACGTGAG 387
.||.|||||..|.|||||.||||||| ||| |||.|||
BL00702___yvs 345 CTATTTGACGACTTTCTTGCCGATCT-------TAACCGACGGACGCGAG 387
BSNT_04971___ 388 ATGTTTTCGA--TCGGCGGGCAAGAGGTGACACTCGGCCAATTACTGACG 435
.||.|| || |||||||.||....||.|||||.|||||..|..||||.
BL00702___yvs 388 CTGGTT--GAATTCGGCGGACACCCCGTTACACTTGGCCAGCTCTTGACA 435
BSNT_04971___ 436 TTTGCCGTATGTACGATCTTGTTATGGGGAACGCACGCGATTCTTGTTGC 485
||...|||.||||||||.|||||||||||.|||||....||.||.||..|
BL00702___yvs 436 TTCATCGTGTGTACGATTTTGTTATGGGGGACGCATTTTATCCTAGTCTC 485
BSNT_04971___ 486 CAGCATTAACGGCGCAAGTAAACTAAACTTTGTCACAACGCTTTCTAAAG 535
||||||.||.||.||..|.||.||.||||||.|..|.||..||||.||||
BL00702___yvs 486 CAGCATAAATGGAGCGGGCAAGCTGAACTTTTTGGCGACTTTTTCCAAAG 535
BSNT_04971___ 536 TGTTAGGTTTTGTCTTCTTTATCGTTGCCGGTTTATTTGTGTTTCAAACG 585
||.|.||.||||||.|.|||||.|||||.|||||.||.||.|||||||||
BL00702___yvs 536 TGCTTGGGTTTGTCCTGTTTATTGTTGCAGGTTTGTTCGTTTTTCAAACG 585
BSNT_04971___ 586 GCATTATTCG-GTCATTTTTATTTCCCGGTTCAAGGAGAAAACGGCACAA 634
|||||||||| .||| ||||||||.||..|..||..|||| ||||.||
BL00702___yvs 586 GCATTATTCGAATCA-TTTTATTTTCCAATCGAATCAGAA---GGCAAAA 631
BSNT_04971___ 635 GCATTGGAATTGGCGGCCAGGTTCATAACGCCGCGATTTCTACACTGTGG 684
||||.||..|.|||||.||||||||.||.||.||||||||.||.||||||
BL00702___yvs 632 GCATAGGGCTGGGCGGACAGGTTCACAATGCGGCGATTTCAACGCTGTGG 681
BSNT_04971___ 685 GCGTTTGTCGGAATTGAATCCGCGGTGATCCTGTCCGGCCGTGCGCGC-- 732
|||||||||||.||.||.||.|||||.|||.|.||.|| ||||||
BL00702___yvs 682 GCGTTTGTCGGCATCGAGTCTGCGGTAATCTTATCAGG----GCGCGCAT 727
BSNT_04971___ 733 --TCTCAGCGTGATGTGAAACGTGCGACAATTACCGGCTTGCTGATTGC- 779
||.|||||||||||.|||||.|||||.|||||||||.||.|.|||||
BL00702___yvs 728 CATCCCAGCGTGATGTCAAACGCGCGACCATTACCGGCCTGTTAATTGCG 777
BSNT_04971___ 780 CTTGAGCATATATATTATTGTGACTTTAATTACGATGGGTGTTCTGCCGC 829
||.| ||||.|||||.||..|.|||||||||||||||||.||..|.||||
BL00702___yvs 778 CTCG-GCATTTATATGATCATCACTTTAATTACGATGGGCGTCATCCCGC 826
BSNT_04971___ 830 ATGATAAGCTTGTC--GGC-TCTGAAAAACCATTTGTTGATGTACTCTAT 876
|.|||.||| || ||| ||.||.|||||.||.||||||||.||..|.
BL00702___yvs 827 ACGATCAGC---TCCAGGCATCAGATAAACCGTTCGTTGATGTGCTGCAC 873
BSNT_04971___ 877 GCGATTGTTGGAAACGCGGGAAGCGTGATTATGGCGCTTTTGGCTATCCT 926
|.||||.|.||.|.|...||.|||||||||||||||.|.|||||.|||.|
BL00702___yvs 874 GTGATTATCGGCAGCTTCGGCAGCGTGATTATGGCGGTCTTGGCAATCGT 923
BSNT_04971___ 927 TTGTTTATTCGGAACGATGCTCGGCTGGATTTTGCTTGGCTCTGAGGTGC 976
||.|||.||||||.|||||||||||||||||||..|.|||.|.|||||.|
BL00702___yvs 924 TTCTTTGTTCGGATCGATGCTCGGCTGGATTTTAATCGGCGCAGAGGTTC 973
BSNT_04971___ 977 CATACCAAGCCGCTAAAGCAGGAGATTTCCCGGCATTTTTTGCAAAAACG 1026
|.||.||.||.||.|||||.||.|||||.||.||.||.|||||.||||||
BL00702___yvs 974 CGTATCAGGCGGCAAAAGCCGGTGATTTTCCTGCTTTCTTTGCGAAAACG 1023
BSNT_04971___ 1027 AATAAAAAGGGAAGTCCGGTCATTGCACTTATTATTACAAACGTCATGTC 1076
||||||||||||||||||||||.|.||.|.||..|.||||||||.|||||
BL00702___yvs 1024 AATAAAAAGGGAAGTCCGGTCAATTCATTGATCGTCACAAACGTGATGTC 1073
BSNT_04971___ 1077 ACAGGTCTTCATTTTCTCGGTTATTTCCCGGACAATAAGTGACGCATTTA 1126
.|||.||||.||||||||....|||||..|.||.||.||.||.||.||||
BL00702___yvs 1074 GCAGATCTTTATTTTCTCAACGATTTCGGGAACGATCAGCGAAGCCTTTA 1123
BSNT_04971___ 1127 CATTTTTAACGACAGCGGCTACACTTGCATATTTAATTCCGTATCTGGTA 1176
|.||||||||.||..||||.||.||.||.||..|..|.||.|||||..||
BL00702___yvs 1124 CGTTTTTAACAACGTCGGCGACGCTCGCTTACCTTGTCCCTTATCTCATA 1173
BSNT_04971___ 1177 TCTGCAATCTACAGCTTGAAGGTAGTCATCAAAGGTGAAACGTATGACCA 1226
.|.||..|.|.||||||||||.|..||.|||||||.||.||.||.|.|.|
BL00702___yvs 1174 GCGGCTCTTTTCAGCTTGAAGCTCATCCTCAAAGGGGAGACATACGGCGA 1223
BSNT_04971___ 1227 GCTGAAAGGCTCCCGTGTAAGAGACGGATTGATCGCGATACTGGCGTG-- 1274
|||||||||.||..|...|.|||||||..|.|| ||.|.||
BL00702___yvs 1224 GCTGAAAGGTTCAAGAACAGGAGACGGCATCAT--------TGCCTTGGC 1265
BSNT_04971___ 1275 ------TGCATACTCCGTGTTT----GTTATCGTAACAGGCACAGCAGAT 1314
|||.||||| ||| ||.|||||..|||||||..|.||.
BL00702___yvs 1266 CGCTCTTGCGTACTC----TTTATGGGTCATCGTTTCAGGCACGTCTGAC 1311
BSNT_04971___ 1315 TTAACGACATTTATCCTCGGCATCGGTTTATTCTTTGTCGG-CTT--AAT 1361
||.||.||.||||||.|.||.|||||..|.||.||.||||| ||| .||
BL00702___yvs 1312 TTGACCACCTTTATCTTGGGAATCGGGCTGTTTTTCGTCGGTCTTGCGAT 1361
BSNT_04971___ 1362 CGTTTATCCATTTGTGAGTAAAAAGTTCCAGAAAGAAAAACAAGCATAA 1410
| ||.||.||.||....||||||||| |||.|.||.||||..|.|
BL00702___yvs 1362 C---TACCCGTTCGTCTACAAAAAGTTC---AAAAATAATCAAGTGTGA 1404
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