Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04990 and BL00699
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:11
# Commandline: needle
# -asequence dna-align/BSNT_04990___yvgS.1.5803.seq
# -bsequence dna-align/BL00699___yvgS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04990___yvgS-BL00699___yvgS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04990___yvgS-BL00699___yvgS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04990___yvgS
# 2: BL00699___yvgS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2578
# Identity: 1547/2578 (60.0%)
# Similarity: 1547/2578 (60.0%)
# Gaps: 500/2578 (19.4%)
# Score: 4205.0
#
#
#=======================================
BSNT_04990___ 1 ATGAATCAGCAGGA------TAAGGAATGGAAGGAAGAGCAGTCGAGAAT 44
..|||||| |.||||||||..||||||| ||.||.
BL00699___yvg 1 ------GTGCAGGAAAACGGTCAGGAATGGCTGGAAGAG-----GAAAAA 39
BSNT_04990___ 45 AGATGAGGTGCTGC---------AGGAGCTCGAAAAAAAAGAGCGGTT-- 83
.|| .|.|.|| ||||..|.||..|||| |.||
BL00699___yvg 40 CGA----ATCCGGCTTGTTTTAAAGGAATTGGATCAAAA-----GCTTCA 80
BSNT_04990___ 84 ---TCT----GGAAACGTCTGCGGGCGGGTTGAAGCATGATATCATCGGA 126
||| ||||| ..|.|||||.||||||.|.||||||||| ||
BL00699___yvg 81 TTCTCTAAAGGGAAA----AACCGGCGGATTGAAGGAGGATATCATC-GA 125
BSNT_04990___ 127 TTAA--GAAAAAGCTTTTGGGAG-GATGTTAAGGTTAATTTTGATGATGC 173
||.| ||||.| ||||.|||| |||||.|..||.||..|.|..||||.
BL00699___yvg 126 TTTACGGAAACA--TTTTTGGAGCGATGTCACCGTAAACATAGCCGATGA 173
BSNT_04990___ 174 CCATGAAGCGATTGAAACGATGGCAAGCATTAAGCAGCAGGCAGAGCTGC 223
..||||||||.|||||||..|....||||||||.||||||||.|||.|..
BL00699___yvg 174 AAATGAAGCGGTTGAAACATTTTTTAGCATTAAACAGCAGGCTGAGGTTT 223
BSNT_04990___ 224 TGTCTGATCGGGAA------CACAATCATCGGCGCATGGAT---CAG-CA 263
||.||||..||||| ||.||.|| |.| ||| ||
BL00699___yvg 224 TGGCTGAGAGGGAAAGGAGCCATAAGCA----------GTTTTACAGCCA 263
BSNT_04990___ 264 GCTCAAACGAA----TTCATCAATTAAAAAAATCGCCTTATTTCGGCCGG 309
|||.||| || ||.| ||.|.|||.|||||||||||||||||||.
BL00699___yvg 264 GCTGAAA--AACCTGTTAA--AAGTGAAAGAATCGCCTTATTTCGGCCGC 309
BSNT_04990___ 310 ATTGATTTTATTGAAAACGGCGAGGAGCAGGCAGAG--CGAATTTATATC 357
.|.||||||.|.||..|||||||.||..|.||.||| || |.||.|||
BL00699___yvg 310 GTAGATTTTTTGGAGGACGGCGAAGAAAACGCTGAGTCCG--TCTACATC 357
BSNT_04990___ 358 GGTTTAGCTTCCTGTTTGGATGAGAAGGAGGAACACTTTCTGATTTATGA 407
||..|.||.||.|...||.||||.||.||.||.|..|||.||||.|||||
BL00699___yvg 358 GGACTCGCCTCTTTAATGTATGAAAAAGAAGAGCGGTTTTTGATCTATGA 407
BSNT_04990___ 408 CTGGAGGGCGCCGATATCAAGTTTGTACTACAATTATTCCCCAGGAAAAG 457
.|||||.||||||||.||.|||.|||.|||.||.|||...||.|| .|
BL00699___yvg 408 TTGGAGAGCGCCGATTTCCAGTCTGTTCTATAACTATGGACCCGG---CG 454
BSNT_04990___ 458 CGG---AGTACGAGGTGCCCGGTGAAACGATAGAAGGGGAA--ATGGTGC 502
||| |.|||||.||.||.|..||.|||.| .||||||| ||.|.||
BL00699___yvg 455 CGGCTCAATACGAAGTTCCGGACGAGACGGT--CAGGGGAACGATTGAGC 502
BSNT_04990___ 503 TGAAACGCCAGTTTATGATCAAAAACGGCAC-TCTCAAGGCGATGTTTAA 551
|||||.|.||.|||.|..|||||||||| || .||.||.|||||||||||
BL00699___yvg 503 TGAAAAGGCAATTTCTCTTCAAAAACGG-ACAGCTGAAAGCGATGTTTAA 551
BSNT_04990___ 552 TACCGATATGACGATTGGTGATGAAATGCTGCAAGAGGTATTAAGCCATC 601
|||.||||||.|||||||.||||||.|.||.||.||.||..|..|.||.|
BL00699___yvg 552 TACGGATATGGCGATTGGGGATGAAGTCCTTCAGGAAGTGCTGGGGCAGC 601
BSNT_04990___ 602 ACTCCGATACCCAAATGAAAAACATCGTGTCTACGATTCAGAAAGAACAA 651
|..||||||.|||.|||||||.||||||..|.||||||||.||||||||.
BL00699___yvg 602 AGGCCGATATCCAGATGAAAAGCATCGTCGCGACGATTCAAAAAGAACAG 651
BSNT_04990___ 652 AATCAGATTATCCGTAATGAAAAAAGCAAGATCCTGATCGTGCAGGGAGC 701
||||||||.||.||.||.|||||.|||....|..|.||.||.|.||||||
BL00699___yvg 652 AATCAGATCATTCGGAACGAAAAGAGCCGCTTTTTAATTGTTCGGGGAGC 701
BSNT_04990___ 702 GGCTGGCAGCGGGAAAACATCGGCTGCGCTTCAGCGTGTCGCTTATTTGT 751
||||||||||||.|||||.|||||.||..|.|||||.|.|||.||||||.
BL00699___yvg 702 GGCTGGCAGCGGAAAAACGTCGGCGGCATTGCAGCGGGCCGCATATTTGC 751
BSNT_04990___ 752 TATACAGGCACCGTGGC----GTCATTGAT---GCCG-GACAAATCGTTT 793
| |.||||.||| |.|| ||| |.|| |.||.||..|..
BL00699___yvg 752 T------GTACCGCGGCCGCGGGCA--GATCGAGTCGAGCCAGATGCTGC 793
BSNT_04990___ 794 TGTTTTCTCCCAA-CTTCTTATTTAACAGCTATGTCTCCTCTGTTTTGCC 842
|.||.|||||.|| ||.||| |||||||||||||||.||..||||.||||
BL00699___yvg 794 TATTCTCTCCAAACCTGCTT-TTTAACAGCTATGTCGCCAATGTTCTGCC 842
BSNT_04990___ 843 GGAGTTAGGAGAAGAGAATATGGAGCAGGCGACGTTTCAGGAATATATCG 892
.|||.|.|||||.||.||.||..|||||.|||||||.|||||||.|.|.|
BL00699___yvg 843 TGAGCTCGGAGAGGAAAACATCCAGCAGACGACGTTCCAGGAATTTGTAG 892
BSNT_04990___ 893 AGCATCGTCTTGG-CCGCAGGTTCAAATGTGAAAGCCCCTTTGATCAGCT 941
.||..||.||||| ..||||||.| .|||.||.|..||.||.||||||||
BL00699___yvg 893 CGCGCCGCCTTGGAAAGCAGGTAC-CATGCGAGACTCCGTTCGATCAGCT 941
BSNT_04990___ 942 CGAATATTGCCTGACCGAAACAAA--GGGAGGCGATTTTCCAACAAGGCT 989
.||||||||..|.||||...||.| |.|||| |.||..||.
BL00699___yvg 942 TGAATATTGTTTAACCGCTTCAGACGGTGAGG---------AGCAGCGCA 982
BSNT_04990___ 990 TGCGGGAATCACATGGA--------------AGGCGGGTTTATCCTTTCA 1025
|.||| ||.|.||.|| ||.|.|| ||||||
BL00699___yvg 983 TCCGG--ATGAAATCGATTGAATTGAAATCCAGTCTGG------CTTTCA 1024
BSNT_04990___ 1026 ---GCAATTCATTAATGAATACGTCACACGGCT-TTCCTCTG----ACGG 1067
||| ||||..||||.|||||||.| | || || |.||
BL00699___yvg 1025 AAGGCA--TCATCGATGATTACGTCAAA----TATT----TGGCAAAAGG 1064
BSNT_04990___ 1068 G---ATGATTTTTAAAAATATTATATTCCGCGGACAAAAGCTGATCACAA 1114
| .||.|.||||||.||||.|..||.||||||.|||.|.|.|||||||
BL00699___yvg 1065 GCACCTGGTGTTTAAACATATCACCTTTCGCGGAAAAAGGATCATCACAA 1114
BSNT_04990___ 1115 --------AGGAGCAAATTCAATCCTATTT--------TTACTCATTGGA 1148
|.|.|.||||| ||| ||..||||
BL00699___yvg 1115 GCGGTCAGATGCGGAAATT--------TTTCGCGGCCCTTGATCAT---- 1152
BSNT_04990___ 1149 TCAAAATCAC----TCCATTCCGAATCGGATGGAGCAAACCGCGAAGTGG 1194
|||.| ||| ||| ||.|||||.||.|||||.|..||.|||
BL00699___yvg 1153 TCAGA--CACGCTGTCC------AACCGGATTGAACAAACGGGAAAATGG 1194
BSNT_04990___ 1195 CTGCTGAGTGAGCTTAACAAGCTTG-AGAAAAAGGAACGGC--GAAAG-- 1239
|||.|| .|||| |.|| |.|||.|.|||||.| |||||
BL00699___yvg 1195 CTGTTG---CAGCT-------CCTGAATAAATATGAACGCCAGGAAAGAA 1234
BSNT_04990___ 1240 -----GATTGGGTCGTTCATG-AAGCTGAGCTGCTTGACAAAGAGGACTA 1283
||.||||||.|..|.| |||| ||||||||.||.||||||||.||
BL00699___yvg 1235 AAAAAGACTGGGTCATCGAAGAAAGC-GAGCTGCTGGATAAAGAGGAATA 1283
BSNT_04990___ 1284 CTTGGACGTGTGCAAA-------AAA---CTGCAAGAAAGGA--AACGAT 1321
||| ||| ||| ||.||.| |||| |.||.|
BL00699___yvg 1284 CTT----------AAAGGCTTATAAACGTCTTCAGG--AGGAACAGCGCT 1321
BSNT_04990___ 1322 TCAGCGAGAGTACGTTTAACGATTATCAAAGAGAGCAGCAGCTGCTTGCC 1371
|.|..||||.|||||||.||||||||.||||.||||...|.||.||||||
BL00699___yvg 1322 TTACGGAGAATACGTTTGACGATTATGAAAGGGAGCGAAACCTCCTTGCC 1371
BSNT_04990___ 1372 GCCATCATTGTGAAAAAAGCTTTCAAACCGCTCAAGCAGGCGGTCA---- 1417
.|||||.|||...|||..|..|||||.|||||||||||.|.|||.|
BL00699___yvg 1372 TCCATCGTTGCCGAAAGGGAGTTCAAGCCGCTCAAGCAAGTGGTAAAAGC 1421
BSNT_04990___ 1418 ----GGCTCCTTGCATTTCTTGATGTTACA------------CAGCTGTA 1451
||| |||.|||||.|||.| ||||| |.
BL00699___yvg 1422 GTTCGGC--------TTTATTGATTTTAAAGGAACATACCTTCAGCT-TT 1462
BSNT_04990___ 1452 TTT----------------GCAA-------TTGTTTTCTGGCTGGGGAGG 1478
||| |||| .||.|..|||||.|
BL00699___yvg 1463 TTTCCGGACGCTATACCCCGCAAACGCGCCCTGATGACTGGCAG------ 1506
BSNT_04990___ 1479 AAAATTTCAGCATGAGAAGATGGCCGC-GATAGGTGAGCTGACCCGTTCG 1527
|||||..|.|.||...|.| ||.| |||| ||||
BL00699___yvg 1507 --------AGCATTTGCACATTCACTCAGAAA----AGCT------TTCG 1538
BSNT_04990___ 1528 GCATTTACGGATAATAAATTGCTCTATGAGGACGCGGCACCGTTTCTTTA 1577
||| |.|.||..||||.|||||.||.||.|..||.|||.|.||
BL00699___yvg 1539 ---TTT-----TGAGAAGCTGCTTTATGAAGATGCCGTCCCTTTTTTATA 1580
BSNT_04990___ 1578 TATG-----CAGGATCTGATTGAGGGCAGAAAGAAAAATACGAAGATCAA 1622
|||| || |.|||| |.|||.|...||||||.|||...|||..
BL00699___yvg 1581 TATGAAAAACA--AGCTGA---AAGGCGGGGGGAAAAACACGGCAATCCG 1625
BSNT_04990___ 1623 ACATCTATTTATTGACGAAGCCCAGGACTATTCACCGTTTCAGATGGCTT 1672
.|||.||||.|||||.|||||||||||.||..|.||.|||||..|.||||
BL00699___yvg 1626 CCATTTATTCATTGATGAAGCCCAGGATTACACGCCTTTTCAACTTGCTT 1675
BSNT_04990___ 1673 ACATGAGA-AGCATTTTTCCGGC-TGCCAGCATGACAGTGCTCGGTGATA 1720
...|| || |||.|.|||||.|| || ||||||.||..||||.||.||..
BL00699___yvg 1676 TTTTG-GAGAGCTTGTTTCCCGCGTG-CAGCATCACGATGCTGGGAGACT 1723
BSNT_04990___ 1721 TCAATCAGTCCA-TCTACGCGCATACCATA-CACGGGGATCAG------- 1761
|.||.|||.|.| ||| .||.|||.|| || ||| |||.||
BL00699___yvg 1724 TAAACCAGGCGATTCT-TGCCCATGCC-TATCAC---GATAAGACGCTTC 1768
BSNT_04990___ 1762 CGTATGGATGCGTGCTTTGA------------GGATGATCCTGCTGAGTA 1799
.||..|||.||||| ||||| ||| |||| |
BL00699___yvg 1769 TGTCGGGAGGCGTG-TTTGAAGGCGAAAAAACGGA-GATC---------A 1807
BSNT_04990___ 1800 TGTTCGTTTAAAGAGAACATACAGATCAAC--AAGGCAGATTGTCGAGTT 1847
|...| ||.|||.|.|..|||||.||.|| ||| |.|||||.||.||
BL00699___yvg 1808 TCACC--TTGAAGCGCAGCTACAGGTCGACGAAAG--AAATTGTTGAATT 1853
BSNT_04990___ 1848 TACCAAAGCG-ATGCTTC-AAGATGGAGCG--GATATTGAGCCGTTTAAT 1893
.| ||||||| || |.|| ||| ||.||| ||.||.||..|.||||||
BL00699___yvg 1854 GA-CAAAGCGCAT-CATCGAAG--GGGGCGAAGAGATCGAAGCTTTTAAT 1899
BSNT_04990___ 1894 AGAAGCGGGGAAATGCCGCTCGTTGTTAAAACTGAAGGACATGAGAGCCT 1943
||.|.|||..| |||||.|| ||
BL00699___yvg 1900 AGGAACGGCAA----------------AAAACCGA-------------CT 1920
BSNT_04990___ 1944 TTGCCAA---------AAGCTCGCGC--------AAGAAAT--------- 1967
|||.||| |..|||..|| ||||.||
BL00699___yvg 1921 TTGACAATATCAGCCGATCCTCATGCACACCATAAAGAGATGGCTTCCCT 1970
BSNT_04990___ 1968 --TGGCCGGC--TCAAGAAAAAAGGGCACGAAACAATAGCCGTCATCTGC 2013
||.|||.| |||| |||.||||.|..||.||.||.||.||||||||.
BL00699___yvg 1971 TATGACCGCCCTTCAA-AAAGAAGGACTTGAGACGATTGCAGTCATCTGT 2019
BSNT_04990___ 2014 AAGACTGCGCAGCAATGCATACAGGCG---CACGC--CCACATGAGTGAA 2058
||.||.|..|.|.||||||...|.||| || || |..||..||
BL00699___yvg 2020 AAAACAGTCCGGGAATGCAGGGATGCGTTCCA-GCATCTTCAGCAG---- 2064
BSNT_04990___ 2059 TATACAGATGTTCGCCTGATTCATAAAGAAAATCAACCATTTCAAAAGGG 2108
.||.||||..||...|||||..|||||||||....|.|.||||||||.||
BL00699___yvg 2065 CATGCAGAGCTTAAACTGATCGATAAAGAAACGAGAACGTTTCAAAAAGG 2114
BSNT_04990___ 2109 TGTTTGCGTGATTCCGGTGTATTTAGCGAAGGGAATTGAATTTGACGCAG 2158
.||...|||.|||||.||.|||||.|||||.||.||.||||||||.||.|
BL00699___yvg 2115 CGTGGTCGTCATTCCCGTCTATTTGGCGAAAGGGATCGAATTTGATGCCG 2164
BSNT_04990___ 2159 TGCTTGTCTATGATGCATCTGAAGAACACTATCATACAGA---GCACGAC 2205
|..|..|.|||||.||.||||||.|.|| |||||.| |.|.||.
BL00699___yvg 2165 TCATCATTTATGACGCTTCTGAAAAGCA-----ATACAAAAAGGAAAGAG 2209
BSNT_04990___ 2206 CGCAGGCTT--TTATATACTGCGTGCACCCGTGCGATGCACATGCTGGCG 2253
.||.|.||| ||.|||||.||||||||..|.||||||||...||||...
BL00699___yvg 2210 AGCGGACTTTATTTTATACGGCGTGCACGAGGGCGATGCATGAGCTGCAC 2259
BSNT_04990___ 2254 GTATTTTATACAGGTGAAGCCAGTCCGTTTGTAACCGCTGTGCCGCCTCA 2303
.|.||||..|..||..|||..|..|..|||.|||.|| ||..||..|
BL00699___yvg 2260 CTCTTTTCCATTGGAAAAGAAACGCATTTTTTAAACG----GCGTCCCAA 2305
BSNT_04990___ 2304 CTTATAT------CAGATGGCTGAATGA 2325
.|.|||| .|||.| .||.|||
BL00699___yvg 2306 ATGATATGTACACGAGAAG--AGAGTGA 2331
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