Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01244 and BL00696
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_01244___yfnG.1.5803.seq
# -bsequence dna-align/BL00696.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01244___yfnG-BL00696.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01244___yfnG-BL00696.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01244___yfnG
# 2: BL00696
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1220
# Identity: 556/1220 (45.6%)
# Similarity: 556/1220 (45.6%)
# Gaps: 484/1220 (39.7%)
# Score: 918.0
#
#
#=======================================
BSNT_01244___ 1 ----TTGAGTTTCTGGAAAAATAAAAACG-TATTTGTCACGGGATGCACA 45
||| ||||| |||||| ||||..|.||.||..|.|||
BL00696 1 ATGTTTG----------AAAAT-AAAACGATATTCATTACTGGGGGAACA 39
BSNT_01244___ 46 GG-TCTT----TTAGGAAGC---TATTTGGTGAAAGAGCTGAT----TGA 83
|| ||.| |.||||| | ||.|| .|||||.| |.|
BL00696 40 GGCTCATGGGGTCAGGAA-CTCATACTT-------CAGCTGCTAGCCTCA 81
BSNT_01244___ 84 ACAGGGCGCAAACGTTACGGGGCTTGTCAGGGATCATGTGCCTCAATCCA 133
| ||.|.|| |..|||||| ||
BL00696 82 A----GCCCTAA----------------AAAGATCAT-TG---------- 100
BSNT_01244___ 134 ATCTTTATCAG----GGAGAA---------CATATCAAGAA-----AATG 165
|.|||..||| |.|||| ||.|| .|||| |.||
BL00696 101 -TATTTTCCAGAAATGAAGAAAGACAAGTTCAAAT-GAGAAGGCAGATTG 148
BSNT_01244___ 166 AACATCGTGCGGGGCTCTCTTGAGGACTT-------GGCT----GTGAT- 203
||.||| ||.||| |||.|..|| ||.| |.|||
BL00696 149 AAGATC---CGAGGC-----TGACGTTTTTCATCGGGGATATTAGAGATC 190
BSNT_01244___ 204 TGAACGCGCGCTTGGCGAGTATGAGA-----TCGACACTGTCTTTCATCT 248
.|||.||||.|....| ||.||.|.| |||||..||||||.|||.|
BL00696 191 GGAAAGCGCTCAATAC-AGGATTAAAAGGTGTCGACTATGTCTTCCATTT 239
BSNT_01244___ 249 TGCTGCAC--AAGCGATTGT--CGG--CGTGGCAAACCGCAACCCGATTT 292
.||.||.| |||| .||| ||| .|||...||| |.|||.||.
BL00696 240 AGCAGCGCTGAAGC--ATGTCCCGGTTTGTGAAGAAC----AGCCGCTTG 283
BSNT_01244___ 293 CTACCTTTGAAGCGAATATCCTCGGTACATGG------AATATTCTCGAA 336
...|.||..||.|.|||.|| |||.|| ||..|..|.|||
BL00696 284 AAGCATTAAAAACAAATGTC------ACAGGGACCGAAAACGTCATTGAA 327
BSNT_01244___ 337 GCCTGCCGCAAGC-ATC--------CGTTAATTAAGCGGGTCATTGTCGC 377
|| ||| ||| ||||||..|| |||||...||.
BL00696 328 GC--------AGCGATCGAAAACGGCGTTAAAAAA----GTCATCAACGT 365
BSNT_01244___ 378 TTCAAGTGATAAAGCTTACGG-CGATCAAGAAAACCTTCCATACGATGAA 426
.||.|.|||.|||| ||| |||.|..|..|| |||| |||| |||
BL00696 366 CTCGACTGACAAAG----CGGCCGACCCTGCCAA-CTTC--TACG--GAA 406
BSNT_01244___ 427 AACATGCCGCTGCAAGGCAAGCACCCGTACGACGTCTCAAAAAGCTGCGC 476
|| |.|.||| ||..||.|| |.|||||
BL00696 407 ----------TG--ACGAAAG----CGATCGGCG-----AGAAGCT---- 431
BSNT_01244___ 477 AGATCTGATCAGCCA--CACCTATTTTCACACGTACGGGCTTCCGGTCTG 524
||||..||..||.| ||.||.|.||||.|| |||||.||....|.||
BL00696 432 -GATCGTATACGCGAACCATCTGTATTCAGAC--ACGGGTTTTATTTGTG 478
BSNT_01244___ 525 CATTACGCGCTGCGGAAA----CTTATACGGCGGCGG-----------AG 559
||.|.| |.||||| |||..| .||.|||| ||
BL00696 479 ---TAAGGG--GAGGAAATGTGCTTGGA-AGCAGCGGAAGCGTTCTTCAG 522
BSNT_01244___ 560 ATTT----------------------GAACTTCAA--CCGCATCA----- 580
.||| |||| ||| |..|||||
BL00696 523 CTTTTTAAAGACCAGATCAGGGAAAAGAAC--CAAGTCGCCATCACAGAC 570
BSNT_01244___ 581 ------------------TTCCT----------CAGACGATTCAGCTTGT 602
||||| .|.||||||||||||.|
BL00696 571 AAAAGAATGACCCGTTTCTTCCTTACGAAGGAAAAAACGATTCAGCTTTT 620
BSNT_01244___ 603 GCTGAACGGGGAAGCGCCGGAAA---TCCGAAGCGACGGTACCTTTGTAC 649
..|.| |||||.|.|||| .||.|.|||
BL00696 621 ATTAA------AAGCGGCTGAAAGCGGCCAAGGCG--------------- 649
BSNT_01244___ 650 GGGACTACTTCT-ATATTGAAGACGCCG-----------TTCAG------ 681
|||| |.||.| ||..||||..||||| ||.||
BL00696 650 GGGA--AATTTTCATTATGAATTCGCCGGCCTGCAAAATTTTAGACATGG 697
BSNT_01244___ 682 -------GCTTATC--TGCTTCTTGCA--GAAAAA------ATGGAAGAA 714
|||.||| .||||.|.|.| ||||.| ||.|.||||
BL00696 698 CTGAGGTGCTGATCGAAGCTTATGGAAACGAAATAACGTCCATCGCAGAA 747
BSNT_01244___ 715 A-----ACAATCTTGCCGG----AGAGGCCTTTAACTTCAGCAATGAGAT 755
| .||| .||||| |.|| |||||..||
BL00696 748 ACGGGGGCAA---GGCCGGGGGAAAAG--------CTTCATGAA------ 780
BSNT_01244___ 756 CCAGCTG-----ACCGTACTTGAACTGGTAGAGAAAAT---------ATT 791
|.|||| ||| .|.||||| ||.|| .|| .||
BL00696 781 -CTGCTGATTTCACC--TCATGAAC-GGCAG----CATGCTGTCTCATTT 822
BSNT_01244___ 792 AAAGAAAATGAACAGTAATCTGAAACCT-AAGGTGCTGAATCAGGGAAGC 840
|.||| || |||| ..||||.||..||
BL00696 823 ACAGA---------------TG--ACCTCGCGGTGGTGCTTC-------- 847
BSNT_01244___ 841 AATGAAATCAAACAT---CAATATTTATCCGCGGAAAAAGCAAGAAAGCT 887
.||.||||||| || |.|..||.|| ||||||.| |
BL00696 848 -CTGCAATCAAA-ATGCCCGAGCTTCAT------AAAAAGTA-------T 882
BSNT_01244___ 888 GCTGAATTGGACACCGGCCT------ACACCATTGATGAGGGACTTG--- 928
|| |.|||| ||.|||| ||| ||| .|||||
BL00696 883 GC-GGATTG----CCAGCCTTTAGAAACA-----GAT----AACTTGAGC 918
BSNT_01244___ 929 --AAAAAACGATT-----------GAGTG--GTATACGGAATTCTTCAAA 963
||||.||..|| ||| | |||.|.|.|||.||..|||
BL00696 919 TCAAAAGACTTTTTAATCTCAAAAGAG-GAAGTAAAAGAAATGCTGAAAA 967
BSNT_01244___ 964 AAG-------------TAA- 969
||| |.|
BL00696 968 AAGGCGGTTTTTTGGATTAG 987
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