Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04493 and BL00693
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:41
# Commandline: needle
# -asequence dna-align/BSNT_04493___ytcC.1.5803.seq
# -bsequence dna-align/BL00693.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04493___ytcC-BL00693.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04493___ytcC-BL00693.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04493___ytcC
# 2: BL00693
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1569
# Identity: 665/1569 (42.4%)
# Similarity: 665/1569 (42.4%)
# Gaps: 720/1569 (45.9%)
# Score: 1045.0
#
#
#=======================================
BSNT_04493___ 1 ATGAA------GCTTGCC-TTTATCTGTACAGAAAAGCTGCCGGCGCCCG 43
||||| .|||||| .|||| ||..|....|||
BL00693 1 ATGAAAATTCTTCTTGCCACTTAT--------------TGGAGTATTCCG 36
BSNT_04493___ 44 CA-GTACGCGGCGGCGCTAT--TCAAATGATGATTGACGGTGTCACGCCC 90
|| |||.|.||.| |.| .||.|| ||| |||
BL00693 37 CACGTAGGTGGTG----TGTGGACATAT-ATG---------GTC------ 66
BSNT_04493___ 91 TATTTCAGCAGCAGGTA-CGACCTGACCATTTTTTCAATA-GAAGATCCA 138
||||.|.|.|.| || |.||| ||.|.|...|.| |||| ||.|
BL00693 67 -----CAGCTGAAAGAATCG-CTTGA--ATCTATGGGACATGAAG-TCGA 107
BSNT_04493___ 139 TC-GCTCCCA-----AAAAGAGAAACAAAAGACGGCGTACATT----ATA 178
|| |||...| |.||||||| || |.||| |||
BL00693 108 TCTGCTTGGATATGGAGAAGAGAA-----------CG-AGATTGTTCATA 145
BSNT_04493___ 179 TCCGTCTGCCAAAAGAACATTACCGCGAGGCGGTAGCCGAAGAGCTGCGA 228
| || .|||.|||.|| |||.|||.|..|...|||.||||
BL00693 146 T-----TG-TAAACGAAGAT---CGCAAGGTGAAAAAAGAACAGCT---- 182
BSNT_04493___ 229 GCCTCTTCCTTTGATCT---CATTCATGT-GTTCAACAGGCCTTT----A 270
|.|.|||.|||| | ||.||| || |.|||||||.|.||| |
BL00693 183 ---TTTGCCTATGAT-TGAGCAATCA-GTCGATCAACAGTCTTTTCCGCA 227
BSNT_04493___ 271 AATGTCTCTTTATATAAAAAAGCCTCA------CCA---AACAGCAAGAT 311
| ||||||.|.|| ||| ||| .||.| ||||
BL00693 228 A--------TTATATGACAA----TCAATTGGTCCACTTTACTG--AGAT 263
BSNT_04493___ 312 CGTTCTGAGC-CTGCATAACGAA---------ATGTTTTCAG----AAAA 347
| |.|.|| .||.|| ||||| ||.|.||.|| ..||
BL00693 264 C---CAGCGCTATGTAT-ACGAACTTGCAGCTATTTATTTAGGGCTGGAA 309
BSNT_04493___ 348 AAAAATGACCT--TC---GCGCAAG----------------------GAA 370
|||.|.||||| || ||.|||| |||
BL00693 310 AAATACGACCTGATCCATGCCCAAGATGTCATCTCAAGCGGCTGCCTGAA 359
BSNT_04493___ 371 AAGAAGTACTCGA--CAA--------------TGTCTCCATG-ATCAC-- 401
||| ||| || ||| |||..|||.| .||||
BL00693 360 AAG-AGT----GAAGCAAAAAGACACGCCGCTTGTTGCCACGCTTCACGG 404
BSNT_04493___ 402 AACTGTGAGC----GAATTTATTAAACAAACCGTCA---TTGAACGTTTC 444
.|.||| ||| ||| ||.|.||| ||| |..||||.|.|
BL00693 405 GAGTGT-AGCCCATGAA---ATCAGACA-----TCAGCTTACAACGATCC 445
BSNT_04493___ 445 -CCTGAAGCCGA----GGACATCACAA------AAGTTG-------TG-- 474
|..||||.|.| .||||||.||| |..||| ||
BL00693 446 ACAGGAAGTCTAATTCTGACATCGCAAGGGCGTACTTTGACCATCTTGAA 495
BSNT_04493___ 475 -----------TATTCCGGC-------------GTTG------ATT---- 490
|.||.|||| |||| |||
BL00693 496 CGGGTCGGCGCTGTTTCGGCTGACGCTACAATTGTTGCCAACAATTGGTT 545
BSNT_04493___ 491 ---TAAACTCTT--------------ATCCGCCCGTCTGGACGATGAAA- 522
.||.||.|| ||.|.|| |||.||..|||
BL00693 546 GAAGAATCTGTTGACAAAGGAATTCGATACACC-----GGAGGAACAAAT 590
BSNT_04493___ 523 ----------------GGCT----------CGGCTGTCAGAAAAAC---- 542
|||| |.|||.|| .|||||
BL00693 591 CAGCGTTCTCCATTATGGCTATGATATTGACAGCTTTC--TAAAACGAAA 638
BSNT_04493___ 543 --ATACCGGAAA--------AAATACGGTATTGA--AGATAAAAAAGTTA 580
|||| ||| ||||||.|.| | ||||||.|||.|||
BL00693 639 GGATAC---AAAGTCAGCGGAAATACCGCA---AACAGATAAGAAAATTA 682
BSNT_04493___ 581 TTTTATTCGCCGGCCGCTTAA-GCCCG------ACAAA-------AGGA- 615
|..|.|||.|.|| || ||.|| ||||| ||.|
BL00693 683 TCCTTTTCACAGG------AAGGCTCGTTGAAAACAAAGGTGTTCAGCAT 726
BSNT_04493___ 616 -------CCTCACCTTCTCATTCACAGCATGAGA----CGGATTTTGCAG 654
||.|||.|||.||||.|.| ||| |||
BL00693 727 CTGCTTGCCGCACTTTCGCATTTAAA-----AGAGGTTCGG--------- 762
BSNT_04493___ 655 CAGCACCCTGATGCT---GTA--CTGGTCATAGCAGGC----GGGA---A 692
||||.| ||| |||| ||.||.||| |||| |
BL00693 763 ---------GATGATTGGGTATGCTGG--ATTGCCGGCGACGGGGAGAGA 801
BSNT_04493___ 693 GTGG--------------TTCAGCGATGACAGC--------GAAAACCAA 720
.||| ||..||| |.|||| ||||||
BL00693 802 ATGGCGGGACTGAGAATTTTATGCG--GGCAGCTCGGTTTGGAAAAC--- 846
BSNT_04493___ 721 TATGTCACCTATCTGCGCACGCTGGCGCTGCCATACAGAGACCACATAAT 770
.||||| .|
BL00693 847 GATGTC------------------------------------------GT 854
BSNT_04493___ 771 CTTTA--CAAAATTCATTCCCGCAGACGACATCCCAAACCTAT-TTCTG- 816
.|||| .|||| .||| ||.||..||||| ||| |||||
BL00693 855 GTTTATGAAAAA-------GCGC-GATGATGTCCCA----TATCTTCTGT 892
BSNT_04493___ 817 --ATGGCAGATGTATTTG-TGTGCAG----CTCTCAGTGGAACGAACCCC 859
||.||.|||||.|.|| |.|||.| .|||| ||| ||
BL00693 893 CAATCGCTGATGTGTATGTTTTGCCGAGTCTTCTC----GAA--AA---- 932
BSNT_04493___ 860 TC-GCCCGTGTGAATTA-TGAA--GCAATGGCGGCCGGCACGCCCTTAAT 905
|| |||..|||...||| |||| ||||| ..||||| ||..||| ||
BL00693 933 TCAGCCGCTGTCTGTTATTGAAGCGCAAT--TAGCCGG-ACTTCCT--AT 977
BSNT_04493___ 906 TACC---------ACAAACCGGGG------CGGAAACGGTGAAGTCGTAA 940
||.| .|| |||| |.|||| ||||..
BL00693 978 TATCGTCAGCGATGCA----GGGGGACTTCCCGAAA--------TCGTTG 1015
BSNT_04493___ 941 AACACGAAGTCACTGGCCTTGTCATCGAC------AGATACAACAAACCT 984
||||..|.||.||.||..|.||.| ||.| ||||.| |||..|
BL00693 1016 AACATAATGTGACCGGTATGGTGA-CGCCTAAAGGAGATGC-ACAGGC-- 1061
BSNT_04493___ 985 TCTTCATTTGCAA-------AAGCAATTGACAGAGCCTTTACAGATCA-- 1025
.|||||||| ||.||.||| ||...||||.|
BL00693 1062 ----AATTTGCAACTCTATCAATCAGTTG--------TTGGAAGATGAGA 1099
BSNT_04493___ 1026 -----AGAA-----TT-------AATGAACAAAA---TGACAA------- 1048
|||| || ||||.|||.|| || |||
BL00693 1100 CGCTTAGAAAAACTTTAGGGTCCAATGCACACAAATTTG-CAATGGAGTA 1148
BSNT_04493___ 1049 ----AAAACGCCCGA--AAGCATGT--AGAAGCTTTATTTACCTTTACCC 1090
||.|.| || |||| ||| |.|||.||| |..||.||||
BL00693 1149 TTGGAATATG---GATGAAGC-TGTCAACAAGGTTT-TGGACATTTA--- 1190
BSNT_04493___ 1091 ATGCTGCCAAAAGGCTCAATACTGTTTACCAATCCGTTCTGACCCCGAAA 1140
||||.|...||| ||
BL00693 1191 ---------------TCAACAAACTTT---------------------AA 1204
BSNT_04493___ 1141 AACAAACAATTTCCGCCGCCTTTTCTGACGCGAAATTTTGATTTATCATC 1190
||.||
BL00693 1205 AATAA--------------------------------------------- 1209
BSNT_04493___ 1191 TATCAATAGCTTTTTGTGA 1209
BL00693 1209 ------------------- 1209
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