Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02237 and BL00682
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:45
# Commandline: needle
# -asequence dna-align/BSNT_02237___ykoK.1.5803.seq
# -bsequence dna-align/BL00682___ykoK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02237___ykoK-BL00682___ykoK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02237___ykoK-BL00682___ykoK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02237___ykoK
# 2: BL00682___ykoK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1376
# Identity: 1040/1376 (75.6%)
# Similarity: 1040/1376 (75.6%)
# Gaps: 40/1376 ( 2.9%)
# Score: 3872.5
#
#
#=======================================
BSNT_02237___ 1 ATGGTTCAAAACATGACCTATGACGAACTCATTTTACGCATCATTATTTT 50
|||||..||||||||||.|||||.|||||.|||||||||||.||||||||
BL00682___yko 1 ATGGTAAAAAACATGACATATGATGAACTGATTTTACGCATTATTATTTT 50
BSNT_02237___ 51 ACTGAGAGACGG-----GAAAATCAGGGATTTCAGAAGTGTTATTGATGA 95
.||||||||||| ||||| ||.|||..|||..||.|.||.||
BL00682___yko 51 GCTGAGAGACGGAAAACGAAAA-----GAGTTCCAAAGCCTTTTAGAAGA 95
BSNT_02237___ 96 GCTTCAGCCCTATGACATGGCATTTATTTTTAAAGAAATGCCGGAAAAAC 145
.||.|||||.|||||.|||||..||.|.|||||.||||||||.|||||.|
BL00682___yko 96 ACTGCAGCCTTATGATATGGCGATTCTGTTTAAGGAAATGCCCGAAAAGC 145
BSNT_02237___ 146 ACCGCGCCCGCTATTTATCTTATTTAACTGTAGACGATATCACTGATATG 195
||||||.|||.|||.|.||||.||||||.|||||.||.|||||.|||.|.
BL00682___yko 146 ACCGCGGCCGGTATCTGTCTTTTTTAACGGTAGAAGACATCACCGATCTC 195
BSNT_02237___ 196 ATCGGGGAGCTGGAACGCGAATTTCAGCTTGTCGTCTTAAATAAAGTCGG 245
||.||.||.||.||..|.|||...|||||.|||||..|.||.||.|||||
BL00682___yko 196 ATGGGCGAACTTGACAGAGAAGAGCAGCTAGTCGTTCTGAACAAGGTCGG 245
BSNT_02237___ 246 AAAAACAAAAGCAACACTGGCGATGAACAAAATGGACAACGATGACCT-- 293
.|||..|||.||.|..|..|.||||||.||||||||||||||.|||||
BL00682___yko 246 CAAAGAAAAGGCGATCCATGTGATGAATAAAATGGACAACGACGACCTTG 295
BSNT_02237___ 294 ---CGCTCAATTGCTT-GAAGAAATGGACGAAGAACTGAAGGAACAGCTT 339
|||| ||| ||.|||||||||...||.|||||.||.||||||
BL00682___yko 296 CCGCGCT------CTTCGAGGAAATGGACCCTGAGCTGAAAGACCAGCTT 339
BSNT_02237___ 340 TTGTCCAGCATGGAAGCGTCAGAGTCAAAAGCTGTAC-AGCTCTTGATGA 388
.|.|||||||||||||||..|||.||..||||.||.| || |.|||||||
BL00682___yko 340 CTATCCAGCATGGAAGCGGAAGAATCCGAAGCGGTCCGAG-TTTTGATGA 388
BSNT_02237___ 389 ATTACCCGGCTGATTCAGCGGGACGCATGATGACAAACCGGTATGTGTGG 438
|.||||||.||||..||||||||.|.||.|||||||||||.|||||.|||
BL00682___yko 389 ACTACCCGCCTGAAACAGCGGGAAGAATTATGACAAACCGCTATGTCTGG 438
BSNT_02237___ 439 ATCCCTCAGCATTACACGGTAAAAGACGCGGTCGTCAAACTGAAAAGCTT 488
||.||.||||||||||||||||||||.|||||||||||.|||||||||||
BL00682___yko 439 ATTCCGCAGCATTACACGGTAAAAGAAGCGGTCGTCAAGCTGAAAAGCTT 488
BSNT_02237___ 489 CGCTGAAATAGCTGAATCGATCAACTACTTATATGTTATTAATGAAAGCA 538
.||.|||||.||.||.||.||||||||.|||||.||.||.||.|||...|
BL00682___yko 489 TGCGGAAATCGCGGAGTCCATCAACTATTTATACGTCATCAACGAACAAA 538
BSNT_02237___ 539 AACAGCTGGTTGGGGTTCTTTCCTACCGCGATTTGATTCTGGGTGAACCT 588
|||||||.||.||||||.|.||.|||||.|||.|.|||.|||..|||||.
BL00682___yko 539 AACAGCTTGTCGGGGTTATCTCATACCGTGATCTCATTTTGGCAGAACCC 588
BSNT_02237___ 589 GAAGAAAAGGTGCAGGATTTAATGTTTACCCGCGTCATATCAGCAGATGC 638
||.||.|||||.|||||.|||||||||||..|.||||||||.||.||.||
BL00682___yko 589 GATGAGAAGGTTCAGGAATTAATGTTTACAAGGGTCATATCGGCGGACGC 638
BSNT_02237___ 639 TCTTCAGGACCAGGAAGAAGTTGCCCGCCTGATTGAACGTTACGATTTTT 688
||||||.||.|||||||||||.||..|.||.||.||.||.|||||.|||.
BL00682___yko 639 TCTTCAAGATCAGGAAGAAGTCGCAAGGCTCATCGAGCGGTACGACTTTC 688
BSNT_02237___ 689 TGGCAATACCGGTTGTAGAAGAAAACAACGTGCTTGTCGGCATTGTGACA 738
||||.||.||.|||||||||.||||..|.|.|||||||||.||.||.||.
BL00682___yko 689 TGGCGATTCCCGTTGTAGAAAAAAATCATGAGCTTGTCGGGATCGTAACG 738
BSNT_02237___ 739 GTCGATGATATTATCGACGTCGTTATTCGTGAAGCTGATGAGGATTACGA 788
||.|||||.|||||||||.||||.||.|..|||||..||||.||.||.||
BL00682___yko 739 GTTGATGACATTATCGACATCGTCATCCAGGAAGCGAATGAAGACTATGA 788
BSNT_02237___ 789 AAAATTTGCCGCTTCCGGTAAAGACATCACCTTTGACACAAAAGCTTACG 838
||||||.||.||.||.|||||.|..|||||.|||||.||||||.|.||.|
BL00682___yko 789 AAAATTCGCAGCATCAGGTAAGGCGATCACGTTTGATACAAAATCGTATG 838
BSNT_02237___ 839 TGGCGGCATACCGGCGCCTGCCATGGCTAATCTTACTCTTGTTTATCGGA 888
|.||.||||||||.||.|||||.|||||.|||||.||.|||||.|||||.
BL00682___yko 839 TCGCCGCATACCGCCGTCTGCCGTGGCTGATCTTGCTTTTGTTCATCGGT 888
BSNT_02237___ 889 CTGATTTCAGGAAGCATTATCAGCTATTTTGAAGATGCGCTGAAGCAGGT 938
.||||.||.||.|||||.||.||||||||||||||..|||||.|||||||
BL00682___yko 889 TTGATCTCTGGCAGCATCATGAGCTATTTTGAAGACACGCTGCAGCAGGT 938
BSNT_02237___ 939 TGTAGCGCTTGCGTTTTTCATGCCGATGGTGTCAGGGATGACAGGAAATA 988
|||.||..|.||.|||||.|||||||||.|..|.||.|||||.||.||.|
BL00682___yko 939 TGTCGCATTGGCCTTTTTTATGCCGATGATCGCGGGAATGACGGGTAACA 988
BSNT_02237___ 989 CGGGAACACAATCTCTTGCGGTTGTCATCAGAGGTTTGTCTAAAGAAGAA 1038
|.||||||||.||.||.||.||.|||||||||||..||||.||||||||.
BL00682___yko 989 CTGGAACACAGTCCCTCGCTGTCGTCATCAGAGGGCTGTCAAAAGAAGAG 1038
BSNT_02237___ 1039 ATGAACAAAAAAACGATTGTGCGCCTGATCTTCCGGGAGTTCAGAACAAG 1088
.|.||.||||||||||||.|.|||.||||.|||||||||.|.|||.|..|
BL00682___yko 1039 CTCAATAAAAAAACGATTTTCCGCTTGATTTTCCGGGAGCTTAGAGCCGG 1088
BSNT_02237___ 1089 TATTTTTATCGG-AGCGGTTTGTTCTGTGCTGATTGCGATT------GTC 1131
.|||.||||.|| |.|| |.||||| |||.|.|||| .||
BL00682___yko 1089 GATTATTATTGGCATCG------TGTGTGC-GATCGTGATTACGGGAATC 1131
BSNT_02237___ 1132 TCCATCATATGGCAGGGGAATGCGCTTTTGGGATTTGTTGTCGCCTCTTC 1181
.|.||..||||||||||||||..|||..|.||||||||.||.|...||||
BL00682___yko 1132 GCGATAGTATGGCAGGGGAATCTGCTGCTCGGATTTGTGGTAGGGACTTC 1181
BSNT_02237___ 1182 GCTGTTCTTAACCTTAATCATCGGCACGATGTCAGGAACGATTATCCCTA 1231
|||.||....||..|.||||||||.||||||.|.||||||||..||||.|
BL00682___yko 1182 GCTTTTTGCCACTCTGATCATCGGAACGATGGCGGGAACGATCGTCCCGA 1231
BSNT_02237___ 1232 TTATTTTGCACAAACTG-AAAGTGGACCCGGCGATTGCTTCTGGACCGCT 1280
|.||..|.||| ||.|| ||.||.|||||.||||||||.||.||.|||||
BL00682___yko 1232 TCATCCTTCAC-AAGTGCAATGTCGACCCTGCGATTGCATCGGGTCCGCT 1280
BSNT_02237___ 1281 GATTACAACGTTAAACGATATTTTATCTTTATTAATCTACTTTGGCATTG 1330
|||||||||.|||||.||.|||||.||..|.||.||||||||.||.||||
BL00682___yko 1281 GATTACAACATTAAATGACATTTTGTCGCTGTTGATCTACTTCGGTATTG 1330
BSNT_02237___ 1331 CCACTGCATTCATTCACTCATTATAA 1356
|.||||||||||||||.||..|.|||
BL00682___yko 1331 CAACTGCATTCATTCATTCGCTGTAA 1356
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