Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03290 and BL00681

See Amino acid alignment / Visit BSNT_03290 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:58
# Commandline: needle
#    -asequence dna-align/BSNT_03290___ypwA.1.5803.seq
#    -bsequence dna-align/BL00681___ypwA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03290___ypwA-BL00681___ypwA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03290___ypwA-BL00681___ypwA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03290___ypwA
# 2: BL00681___ypwA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1588
# Identity:    1054/1588 (66.4%)
# Similarity:  1054/1588 (66.4%)
# Gaps:         167/1588 (10.5%)
# Score: 3226.0
# 
#
#=======================================

BSNT_03290___      1 ATGGAGATACATACATATGAAAAAGAATTTTTTGATCTTTTAAAAAGAAT     50
                     |||..|||..||||||||||||||||.|||||.||....|||||.|.|||
BL00681___ypw      1 ATGTCGATCAATACATATGAAAAAGAGTTTTTAGAAACATTAAAGAAAAT     50

BSNT_03290___     51 CTCACATTACAGC------GAAGCAGTTGCG-TTA-----ATGCACTGGG     88
                              ||||      | |||||  ||| |||     |||.||||||
BL00681___ypw     51 ---------CAGCCGGTATG-AGCAG--GCGATTAATGTCATGTACTGGG     88

BSNT_03290___     89 ACTCCAGAACAGGAGCGCCGA-AAAACGGCTCAGAGGA---TCGTGCCGA    134
                     |....|||||.||.||||||| ||||.||    |||||   .||.||.| 
BL00681___ypw     89 ATATGAGAACGGGCGCGCCGAGAAAAGGG----GAGGAAAGCCGCGCTG-    133

BSNT_03290___    135 AAGC-ATCGGCCAGCTTTCAACAGATATATTCAATATCCAAACATCAGAT    183
                     |||| ||||||||..|.||..||||..|.||             ||||||
BL00681___ypw    134 AAGCTATCGGCCAATTGTCGGCAGACGTCTT-------------TCAGAT    170

BSNT_03290___    184 -------------CGAATGAAGGAGCTTATCGATGTCCT-------GTAT    213
                                  ||.|||||.||||||.|.||| .|||       |.|.
BL00681___ypw    171 GAGAACGTCCCCGCGGATGAAAGAGCTTTTGGAT-ACCTTAGCCGGGCAA    219

BSNT_03290___    214 GAAC--GATTTGATGACTTGTCGGAAGATACGAAAAAAGCAGTGGAACTG    261
                     .|||  |||   .||.|||.|     |||||..|.|||||.||.|||...
BL00681___ypw    220 AAACAAGAT---CTGCCTTTT-----GATACACAGAAAGCGGTTGAAGAA    261

BSNT_03290___    262 GCGAAAAAAGAGTACGAAGAGAATAAGAAAATCCCTGAGGCTGAATACAA    311
                     |||||||||||||||||....||.|..||.||.||.||.|..||.|.|||
BL00681___ypw    262 GCGAAAAAAGAGTACGATTTAAACAGCAAGATTCCGGAAGAGGAGTTCAA    311

BSNT_03290___    312 AGAATACGTGATTCTGTGTTCAAAGGCAGAAACAGCGTGGGAGGAAGCGA    361
                     ||||||...||..|||..|||.||.||.|||.|.|..|||||..||||||
BL00681___ypw    312 AGAATATACGACACTGACTTCCAAAGCGGAATCCGTCTGGGAAAAAGCGA    361

BSNT_03290___    362 AAGGAAAA----TCTGATTTCAGCT-TGTTTTCTCCTTATTTAGAACAGC    406
                         ||||    ||.||||| ..|| |.|||.||||.|||||||||.|..
BL00681___ypw    362 ----AAAAGGCGTCCGATTT-TTCTCTCTTTGCTCCGTATTTAGAAAAAA    406

BSNT_03290___    407 TGATTGAATTCAATAAACGTTTTATTACGTATTGGGGATATCAAGAGCAT    456
                     |.||.||.||.||.|||||.|||||..|.||.|||||||||.|||..|||
BL00681___ypw    407 TCATCGACTTTAAAAAACGGTTTATCTCATACTGGGGATATGAAGGCCAT    456

BSNT_03290___    457 CCTTATGATGCATTGCTTGATTTGTTTGAGCCCGGCGTCACGGT---AAA    503
                     ||||||.|..|..|.||.||....|..||.||.|||||.||.||   |||
BL00681___ypw    457 CCTTATAACACGCTTCTGGACCAATACGAACCAGGCGTTACAGTCGAAAA    506

BSNT_03290___    504 GGTGCTTGATCAGCTGTTTACTGAGCTGAAGGAAGCGGTTATC---CCTC    550
                        |||.||....||.|||.||||..||..|||   ||.||||   ||.|
BL00681___ypw    507 ---GCTCGACGCCCTTTTTTCTGAATTGCGGGA---GGCTATCGTTCCGC    550

BSNT_03290___    551 TTGTTAAACAGGTGACAGCTTCCGGAAATAAA---CCAGATACAAGCTTT    597
                     ||||..||.|   ||..||..||.|..|||||   ||.|||||..|||||
BL00681___ypw    551 TTGTGCAAAA---GATTGCCGCCAGTGATAAAAAGCCTGATACGGGCTTT    597

BSNT_03290___    598 CTTACAAAAGCG-----TTCCCGAAAGAAAAGCAAAAAGAGCTCAGTCTG    642
                     .|| ||    ||     |||||||||||...||    ||.||...||.||
BL00681___ypw    598 GTT-CA----CGATCATTTCCCGAAAGAGCGGC----AGCGCGATGTTTG    638

BSNT_03290___    643 ----TATTTTTTACAGGAGCTTGGCTACGATTTTGATGGC-GGAAGACTT    687
                         |..||.|||||||||||.|||||.|||||||| ||| ||..|.||.
BL00681___ypw    639 CCACTTCTTCTTACAGGAGCTGGGCTATGATTTTGA-GGCGGGGCGCCTG    687

BSNT_03290___    688 GATGAAACCGTTCATCCGTTTGCAACTACGCTGA--ATCGG----GGAGA    731
                     |||||.||.|||||||| |||.||     |.|||  |||.|    ||.||
BL00681___ypw    688 GATGAGACGGTTCATCC-TTTCCA-----GGTGACGATCAGCCAAGGGGA    731

BSNT_03290___    732 CGTTCGGGTCACGACGAG-ATATGATGAAAAAGATTTCCGGACGGCGATC    780
                     .|..|||||.||.|| || |||..|||||||.|||||.|||.||||..|.
BL00681___ypw    732 TGCCCGGGTGACCAC-AGCATACAATGAAAACGATTTTCGGTCGGCTGTT    780

BSNT_03290___    781 TTTGGCACCATTCATGAGTGCGGGCACGCGATTTACGAGCAAAATATTGA    830
                     ||.||.||.||||||||.|||||.||.||.|||||.||.||.||.|||||
BL00681___ypw    781 TTCGGAACAATTCATGAATGCGGCCATGCCATTTATGAACAGAACATTGA    830

BSNT_03290___    831 TGAAGCACTCAGTGGCACGAATTTGTCAGACGGCGCATCAATGGGAATTC    880
                     ||||||.||..|.||.||.|||||.||||||||||||||||||||.||||
BL00681___ypw    831 TGAAGCGCTGGGCGGAACCAATTTATCAGACGGCGCATCAATGGGCATTC    880

BSNT_03290___    881 ATGAATCGCAATCATTATTTTACGAGAATTTTATCGGC-CGCAAC-AAGC    928
                     |||||||.|||||..|.||.||.|||||.||||||||| .|||.| ||||
BL00681___ypw    881 ATGAATCTCAATCCCTTTTCTATGAGAACTTTATCGGCAGGCATCAAAGC    930

BSNT_03290___    929 ATTTTTGGACACCGTACTATCAGAAGATTCAAGAAGCATCACCTGAACAG    978
                       ||||||||.|.|||.|.|.|.||.||..|.||||||...|||||.|||
BL00681___ypw    931 --TTTTGGACGCGGTATTTTGATAAAATAAAGGAAGCAAGCCCTGACCAG    978

BSNT_03290___    979 TT--CAAGGACAT--CTCCCTGGATGATTTTGTCCGGGCAATCAATGAAT   1024
                     ||  ||  |.|.|  ||.||  ||.|..||...|.|.||..|.|||||||
BL00681___ypw    979 TTTGCA--GGCGTTACTGCC--GAAGGGTTCTACAGAGCCGTTAATGAAT   1024

BSNT_03290___   1025 CAAAACCTTCATTTATCAGGGTCGAAGCGGATGAATTAACGTATCCTCTT   1074
                     ||||.||.||..|.||..||.||||.||.||||||.|.||.|||||.||.
BL00681___ypw   1025 CAAAGCCGTCGCTGATTCGGATCGAGGCTGATGAACTGACATATCCGCTG   1074

BSNT_03290___   1075 CATATCATCATCCGTTATGAAATTGAAAAAGCGATTTTTAGCAATGAAGT   1124
                     |||||.||.|||||.|||||||||||||||||||||||.|||...|||||
BL00681___ypw   1075 CATATTATGATCCGCTATGAAATTGAAAAAGCGATTTTCAGCGGCGAAGT   1124

BSNT_03290___   1125 GTCTGTGGAAGATCTGCCGTCGCTCTGGAATCAAAAATACCAGGATTATT   1174
                     .||.||.|.|||.||.||....||.||||||.|.|||||..|.|..||..
BL00681___ypw   1125 ATCGGTCGGAGACCTTCCAAAACTATGGAATGACAAATATGAAGCATACC   1174

BSNT_03290___   1175 TAGGGATTACACCGCAGACCGAC---GCAGAGGGGATTTTACAGGACGTC   1221
                     |.||.|||||.||.|   |||||   ||..|.||.||..|.|||||.|||
BL00681___ypw   1175 TGGGCATTACGCCTC---CCGACGATGCTAAAGGAATCCTGCAGGATGTC   1221

BSNT_03290___   1222 CATTGGGCAGGTGGAGATTTCGGCTACTTCCCATCCTATGCGCTCGGCTA   1271
                     ||||||.|.||.|||||||||||.||.||.||.||.||||||||.||.||
BL00681___ypw   1222 CATTGGTCCGGCGGAGATTTCGGTTATTTTCCTTCATATGCGCTTGGATA   1271

BSNT_03290___   1272 CATGTATGCGGCTCAGCTGAAACAAAAAATGCTTGAGGATCTCCCTGAAT   1321
                     .||||||||||||||.|||||...||..|||||..|.|||||.||.||.|
BL00681___ypw   1272 TATGTATGCGGCTCAACTGAAGTCAAGCATGCTGAAAGATCTTCCGGAGT   1321

BSNT_03290___   1322 TTGACGCTCTCTTGGAAAGAGGAGAGTTCCATCCGAT---AAAGCAATGG   1368
                     |||||..|||..|.||||..||.||.||.||.|||||   ||||   |||
BL00681___ypw   1322 TTGACCGTCTGATTGAAAACGGCGATTTTCAACCGATCAGAAAG---TGG   1368

BSNT_03290___   1369 CTGACGGAAAAGGTGCACATTCACGGAAAACGGAAAAAGCCGTTAGACAT   1418
                     |||||.||..|.||.|||||.|||||.|||.|.|||||.|||.|.||.||
BL00681___ypw   1369 CTGACAGAGCATGTACACATCCACGGCAAAAGAAAAAAACCGCTGGAAAT   1418

BSNT_03290___   1419 TATTAAAGATGCAACAGGAGAAGAGCTGAATGTTCGCTATTTAATTGATT   1468
                     .||||||..|||.|||||.|||||..|.||.||.||..|||||||....|
BL00681___ypw   1419 CATTAAATCTGCGACAGGCGAAGAATTAAACGTCCGTCATTTAATCCGCT   1468

BSNT_03290___   1469 ATTTATCAAACAAATATTCAAATCTCTATCTGTCATAA   1506
                     ||.|...|.|.||||||.|||..||||||.|||.|   
BL00681___ypw   1469 ATCTGGAAGAAAAATATACAACACTCTATTTGTAA---   1503


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