Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03289 and BL00680
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:58
# Commandline: needle
# -asequence dna-align/BSNT_03289___xpt.1.5803.seq
# -bsequence dna-align/BL00680___xpt.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03289___xpt-BL00680___xpt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03289___xpt-BL00680___xpt.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03289___xpt
# 2: BL00680___xpt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 611
# Identity: 419/611 (68.6%)
# Similarity: 419/611 (68.6%)
# Gaps: 52/611 ( 8.5%)
# Score: 1319.0
#
#
#=======================================
BSNT_03289___ 1 ATGGAAGCACTGAAACGGAAAATAG-AGGAAGAAGG---CGTCGTATTAT 46
||||||...||.|||||.|||||.| || ||.||| || ||.||.|
BL00680___xpt 1 ATGGAAAAGCTAAAACGAAAAATTGCAG--AGCAGGGCACG--GTGTTGT 46
BSNT_03289___ 47 CTGATCAGGTATTGAAAGTGGATTCTTTTTTGAATCACCAAATTGATCCG 96
||||..|.||..|||||||.|||||.|||||.|||||.|||||.||||||
BL00680___xpt 47 CTGACGAAGTGCTGAAAGTTGATTCATTTTTAAATCATCAAATCGATCCG 96
BSNT_03289___ 97 ------CTGCTTATGCAGAGAGTTGGTGACGAATTTGCGTCCAGATTTGC 140
.|||| ||| .||.|||||.||.|||||.|| |.|||.|
BL00680___xpt 97 GAATTAATGCT--TGC----TGTGGGTGAAGAGTTTGCTTC--GCTTTTC 138
BSNT_03289___ 141 --AAAAGACGGTATTACCAAAATTGTGACAATCGAATCATCAGGTATTGC 188
..|.||.||..|.||.||.||||||||.||.|||||.|||||.||.||
BL00680___xpt 139 CGGGAGGAAGGCGTCACAAAGATTGTGACGATTGAATCCTCAGGCATCGC 188
BSNT_03289___ 189 TCCCGCTGTAATGACGGGCTTGAAGCTGGGTGTGCCAGTTGTCTTCGCGA 238
.||.||.||.|||.|.||||||||||||||.|||||.||.||.||.||.|
BL00680___xpt 189 ACCTGCCGTGATGGCCGGCTTGAAGCTGGGCGTGCCGGTAGTATTTGCAA 238
BSNT_03289___ 239 GAAAGCATAAATCGTTAACACTCACCGACAACTTGCTGACAGCGTCTGTT 288
||||||.|.|||||.|.||..|.||.||.||..||.||||.||.|||||.
BL00680___xpt 239 GAAAGCGTCAATCGCTTACCTTGACGGAAAATCTGTTGACGGCTTCTGTC 288
BSNT_03289___ 289 TATTCCTTTACGAAGCAAACAGAAA--------GCCAAATCGCAGTGTCT 330
|||||.|||||.|||.||||.|||| |||..|| ||| |.
BL00680___xpt 289 TATTCATTTACAAAGAAAACGGAAAGTACGGTTGCCGTAT--CAG---CC 333
BSNT_03289___ 331 AGGACCCACCTGTCGGAACAGGAT---CATGTGCTGATTATCGATGATTT 377
|| ||||||.|| |.||||| .|.||.|||||.|||||.|||||
BL00680___xpt 334 AG---CCACCTTTC---AAAGGATGACAAAGTTCTGATCATCGACGATTT 377
BSNT_03289___ 378 TTTGGCAAATGGACAGGCAGCGCACGGGCTTGTGTCGAT--TGTGAAGCA 425
|||||||||.|||||.|||||..|.|||||.||.||.|| | |||| ||
BL00680___xpt 378 TTTGGCAAACGGACAAGCAGCTAAAGGGCTCGTTTCCATCAT-TGAA-CA 425
BSNT_03289___ 426 AGCGGGAGCTTCTAT-TGCGGGAATTGGCATTGTTATTGAAAAGTCATTT 474
.||.||.|||....| ||| |||||.||.||.||.||.||.||.|||||.
BL00680___xpt 426 GGCCGGCGCTAAGGTGTGC-GGAATCGGAATCGTCATCGAGAAATCATTC 474
BSNT_03289___ 475 CAGCCGGGAAGAGAAGAACTTGTGAAACTGGGCTACCGAGTGGAATCTTT 524
|||.||||.||.||.|||||||..||.||.||...|.||||.|||||..|
BL00680___xpt 475 CAGACGGGCAGGGAGGAACTTGAAAATCTTGGAATCAGAGTCGAATCCCT 524
BSNT_03289___ 525 GGCAAGAATTCAGTCTTTAGAAGAAGGAAAAGTGTCCTTCGTACAGGAGG 574
.||..|.|||...|||.|.|..|..||||||||..||||..|||||||||
BL00680___xpt 525 TGCGCGTATTGCCTCTCTTGCCGGTGGAAAAGTTACCTTTTTACAGGAGG 574
BSNT_03289___ 575 TTCATTCATGA 585
||...||||||
BL00680___xpt 575 TTGGGTCATGA 585
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