Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03287 and BL00677
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:58
# Commandline: needle
# -asequence dna-align/BSNT_03287___bcsA.1.5803.seq
# -bsequence dna-align/BL00677___bcsA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03287___bcsA-BL00677___bcsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03287___bcsA-BL00677___bcsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03287___bcsA
# 2: BL00677___bcsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1205
# Identity: 731/1205 (60.7%)
# Similarity: 731/1205 (60.7%)
# Gaps: 214/1205 (17.8%)
# Score: 2052.0
#
#
#=======================================
BSNT_03287___ 1 ATGGCGTTTATTTTATCCATT------GGAACAAGTCTTCCTGCG-TATA 43
|||||.|.|.| |||| ||.|||||..|||| ||| |...
BL00677___bcs 1 ATGGCCTATGT------CATTTCGGCGGGGACAAGCATTCC-GCGCTGCC 43
BSNT_03287___ 44 ATGTAAACCAAGAGAAAGCGGCCGAGTTCGCCCGCTATATGTTTCAGCAT 93
||||..||||..||.||||.||||..||.||..|..|.|||||..|..||
BL00677___bcs 44 ATGTCGACCAGAAGGAAGCAGCCGTTTTTGCGAGGGAGATGTTCAAAGAT 93
BSNT_03287___ 94 TCTTTTAAGGATATTGACCGGCTGTTATCCTCCTTTAAAAACGGGCAAAT 143
||.|||||.||.|||||.||.|||.|.||..|.|||.||||.||..||||
BL00677___bcs 94 TCATTTAAAGACATTGATCGTCTGCTGTCAGCTTTTCAAAATGGCGAAAT 143
BSNT_03287___ 144 CCATTCGAGACAGTTTGTTAAGCCGATTGAATGGTATAAAGAGGGGCACA 193
|..|||..|.||.|||||.|.|||..|.||.|||||.|||||||...|.|
BL00677___bcs 144 CGCTTCACGGCAATTTGTCATGCCTTTGGATTGGTACAAAGAGGCCAAGA 193
BSNT_03287___ 194 GCTTTGAAGAAAAAAATCAAATATACATAGA----------AGAAACA-- 231
||||..|.||.||||||||||..|||||.|| |||.|||
BL00677___bcs 194 GCTTCAAGGAGAAAAATCAAACGTACATTGATATGGCTGTCAGACACAGT 243
BSNT_03287___ 232 -CTGAAACACAGCAGAGCGGCTG-TTCGTGAGTGCCTCTCTCATCCGGA- 278
||||| ||.| |||| .|.||.||.| ||||
BL00677___bcs 244 GCTGAA-------------GCCGTTTCG-AATTGTCTGT------CGGAC 273
BSNT_03287___ 279 -----ATTTTTTCAAGAAGCCATTCCTTATGAGAAAGTGGAAGCTGTTTT 323
.|||||..||.|||..||.||||..|..|||.|.||.||..||||
BL00677___bcs 274 GACCGTTTTTTGAAAAAAGAAATCCCTTGCGGAAAAATTGACGCGATTTT 323
BSNT_03287___ 324 TTTCGTCTCCAGCACAGGCCTTTTCACACCGAGTATCGAGGCGCGGCTTA 373
|||..|.|||...||||||.|.|..||.||.||.||.||.|||..|||||
BL00677___bcs 324 TTTTATTTCCTCTACAGGCATCTCGACTCCCAGCATTGAAGCGAAGCTTA 373
BSNT_03287___ 374 TGAATGAACTTCCGTTTTCTCCATATA-----CGAAGCGGATTCCGATTT 418
||||....||.||.||||| |.| ||||||||||.|||||.|
BL00677___bcs 374 TGAACATTCTGCCTTTTTC-----AAAACGGGCGAAGCGGATCCCGATCT 418
BSNT_03287___ 419 GGGGGCTTGGCTGTGCAGGAGGAGC--CAGCGGACTTGCGCGTGCAGCCG 466
|||||||.||||||||||||||.|| || ||..|.|||||.|||..||
BL00677___bcs 419 GGGGGCTAGGCTGTGCAGGAGGGGCTTCA--GGTATAGCGCGGGCATTCG 466
BSNT_03287___ 467 AATACTGCAAAGCGTATCCTACGGCTTTTGTGCTTGTCATTGCTGCCGAG 516
|||||||||||||||.|||.|..||...|||.|||||.|||||.||.|||
BL00677___bcs 467 AATACTGCAAAGCGTTTCCAAAAGCCCATGTCCTTGTGATTGCGGCGGAG 516
BSNT_03287___ 517 CTGTGCAGCCTGACATTCCAGCCGGAAGATAAAACAAAAAGCAATCTGAT 566
||||||||..|.||.||.||...|||.|||.||.|.|||||||||||.||
BL00677___bcs 517 CTGTGCAGTTTAACGTTTCAAAAGGATGATCAATCGAAAAGCAATCTTAT 566
BSNT_03287___ 567 CGGCACCTCGCTTTTTGGTGACGGCATTGCCGCAGC-TTTATTATGCGGA 615
||||||.||..|.|||||.||.||.||.||||| || ||||.|.|||||.
BL00677___bcs 567 CGGCACATCTTTATTTGGCGATGGAATCGCCGC-GCTTTTAATGTGCGGC 615
BSNT_03287___ 616 GAGAAGGCGGA--CCGCAGGATGTCAAAGCTGCA-ACTTGCG-------C 655
.||.|.||||| .|.||| |||| || |.|||.| |
BL00677___bcs 616 AAGGAAGCGGATTTCTCAG-------AAGC--CAGATTTGAGGTTCTTCC 656
BSNT_03287___ 656 CGAAGATAATGGACGCCCAAT-------CTGTTTTGATGAAACAATCAGA 698
.|||| ||.|||.|.|.|||| || ||.||.|.||.||
BL00677___bcs 657 GGAAG-TATTGGGCTCACAATCCAGCACCT-------TGGAAGATTCGGA 698
BSNT_03287___ 699 AGATGTCATGGGCTGGGACTTTACCGATCAAGGATTCAA---------AG 739
|||.||||||||.||||| .|||||.|| ||| .|
BL00677___bcs 699 AGAGGTCATGGGATGGGA-------AATCAATGA--CAACGGTTTTCGCG 739
BSNT_03287___ 740 TCATTTTCTCACGAGACATTCCGACCTTGGTGGAAAAATGGCTCAAAACA 789
||.||||.||..|.||||||||||| ||.|.||||||||
BL00677___bcs 740 TCGTTTTTTCCAGGGACATTCCGAC------------ATTGATCAAAACA 777
BSNT_03287___ 790 -----AATGTACAGAT--------TTTTTTGGACA---AACATA-AGCTG 822
||.|.|| ||| .|||.||.|.| |||||| .|||.
BL00677___bcs 778 CACTTAAAGAAC-GATATCGAAGCATTTCTGAATAAAGAACATATCGCTT 826
BSNT_03287___ 823 T------CATTCCATGATATCAGTGTTTTTTTGGCGCATCCAGGCGGAAA 866
| |||||.| ||.|||.||||.||.||.||||||||
BL00677___bcs 827 TGGAGAACATTCAA----------GTATTTCTGGCCCACCCTGGCGGAAA 866
BSNT_03287___ 867 AAAAGTGATCGATGCATACATCAAAAGTCTCGGGCTGT-CGTCAGAAAAG 915
||||||..||||.||.||.||..|||..||.||..|.| || |||
BL00677___bcs 867 AAAAGTTCTCGACGCTTATATGGAAATCCTTGGATTTTCCG------AAG 910
BSNT_03287___ 916 CTTTCAT---CTG----CGCAAAGCATTTTGCAAAAGCACGGAAATATGT 958
|...||| ||| ||.||| ||||||...|.||||||.|||||||
BL00677___bcs 911 CGCACATCGACTGTTCACGAAAA--ATTTTGGCCAGGCACGGCAATATGT 958
BSNT_03287___ 959 CTTCAGCTACAATCTTGTATGTGATCAAAGACCAT---CTGCAGAACGGA 1005
|.||.||.||..|..||.||||..|.||.||..|| .||||...|||.
BL00677___bcs 959 CATCGGCCACTGTGATGCATGTTTTAAAGGAATATTGCTTGCATGGCGGC 1008
BSNT_03287___ 1006 C----------ATAAAAAGGAAGCTGAACGAGGACTGATTGGCGCATTAG 1045
| |.||.|.|| .|| ||.|..||||| |.|
BL00677___bcs 1009 CCCGTGCCGGGAAAATACGG--TCT---------CTTAGGGGCGC--TCG 1045
BSNT_03287___ 1046 GGCCGGGTTTCTCATCAGAATTGCTGTTATTCAGCTGG--GAAAAGGGGG 1093
|.|||||.||.|||||.||..|||||.|.||.||.||| .|||||.|.|
BL00677___bcs 1046 GACCGGGCTTTTCATCGGAGCTGCTGCTCTTGAGATGGACAAAAAGAGAG 1095
BSNT_03287___ 1094 CCTGA 1098
|||
BL00677___bcs 1096 --TGA 1098
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