Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03277 and BL00670
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:56
# Commandline: needle
# -asequence dna-align/BSNT_03277___ypdQ.1.5803.seq
# -bsequence dna-align/BL00670___rnhA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03277___ypdQ-BL00670___rnhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03277___ypdQ-BL00670___rnhA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03277___ypdQ
# 2: BL00670___rnhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 427
# Identity: 273/427 (63.9%)
# Similarity: 273/427 (63.9%)
# Gaps: 56/427 (13.1%)
# Score: 745.5
#
#
#=======================================
BSNT_03277___ 1 ATGCC--TACAGAAATATACGTAGACGGCGCAAGCGCTGGTAATCCCGGC 48
||||| |..||...|||| |.|||||.||||||||.||..|||||||.
BL00670___rnh 1 ATGCCGGTTGAGGTGTATA--TTGACGGAGCAAGCGCCGGGGATCCCGGA 48
BSNT_03277___ 49 CCTTCCGGTATCGGCATTTTTATCAAACATGAGG----GAATAGCAGAAT 94
||.|||||..|.||||||||||||||| ||.| |||.| |.||.|
BL00670___rnh 49 CCGTCCGGACTTGGCATTTTTATCAAA---GACGGCCAGAAGA-CCGAGT 94
BSNT_03277___ 95 CCTTCTCTATTCCAATCGG---AGTGCATACAAATCAGGAAGCGGAATTT 141
|||||||..||||...||| |.|| |..||.||.|||||.|||||.
BL00670___rnh 95 CCTTCTCCCTTCCCGCCGGCTCACTG---AGCAACCATGAAGCAGAATTC 141
BSNT_03277___ 142 CTTGCATTAATTGAAGGGATGAAGCTATGTGC--AACG------CGCGGG 183
.|.||..|.||.|||||.||||||||.||.|| |||| | |||
BL00670___rnh 142 ATGGCGCTGATCGAAGGAATGAAGCTGTGCGCCGAACGAAACTAC-CGG- 189
BSNT_03277___ 184 TATCAATCGGTTTCCTTTCGAACCGATTCAGATATTGTGGAACGCGCCAC 233
||| |||||.|||||.||||||||..|.||.||.||.|||.|..|
BL00670___rnh 190 -----ATC-GTTTCGTTTCGGACCGATTCGCAGATCGTCGAGCGCACGGC 233
BSNT_03277___ 234 TGAGCTT--GAAATGGTTAAAAATAAAACGTTTCAACCGT--TCGTAGAA 279
.|| || ||..|.||.||||||.|..| ||||||.|.| || |.||.
BL00670___rnh 234 GGA--TTCGGAGTTTGTCAAAAATCAGGC-TTTCAAGCCTTATC-TGGAT 279
BSNT_03277___ 280 GAAATCACCCGATTAAAAGCGGCATTCCCTCTTTTTTTCATCAAATGGAT 329
|..||||.|||.||||||..||..||...|.|.|||||.|||||.|||||
BL00670___rnh 280 GCTATCATCCGCTTAAAAAAGGATTTTGATTTATTTTTTATCAAGTGGAT 329
BSNT_03277___ 330 ACCGGGCAAG-CAAAACCAAAAAGC------CGATCTTCTGGCAAAAGAA 372
.||....||| ||||.| |||| |.|.||| ||.|||.||
BL00670___rnh 330 TCCTTCGAAGTCAAATC----AAGCGGCTGACAAGCTT---GCGAAAAAA 372
BSNT_03277___ 373 GCGATTCGGCTGAATGAAAAGAATTAA 399
|||||...||||||..||....|.|||
BL00670___rnh 373 GCGATATTGCTGAACCAACCCGAGTAA 399
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