Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03439 and BL00657
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:25
# Commandline: needle
# -asequence dna-align/BSNT_03439___resE.1.5803.seq
# -bsequence dna-align/BL00657___resE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03439___resE-BL00657___resE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03439___resE-BL00657___resE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03439___resE
# 2: BL00657___resE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1892
# Identity: 1303/1892 (68.9%)
# Similarity: 1303/1892 (68.9%)
# Gaps: 232/1892 (12.3%)
# Score: 4497.5
#
#
#=======================================
BSNT_03439___ 1 ATGAAATTTTGGAAAAGCGTAGTAGGCAAGCTGTGGTTTACGATCC---- 46
|||||.||||||||.||||||||.||.||.|||||||||||.||.|
BL00657___res 1 ATGAAGTTTTGGAAGAGCGTAGTCGGTAAACTGTGGTTTACCATACTGCT 50
BSNT_03439___ 47 -----TTTCACTCGTCTTGATCGTATTGTTCATTTTAACGGTTCTTT-TG 90
|||||.|.|||| ||||..||.|| || ||||||| ||
BL00657___res 51 TTTGGTTTCATTTGTCT------TATTTATCCTT---AC-GTTCTTTCTG 90
BSNT_03439___ 91 CTGGAGTTTATTGAAAACTACCATGTGGAAGAAGCTGAGAATGATTTAAC 140
||.|||||||||||||||||||||||.||.|||||.||...||||||.||
BL00657___res 91 CTCGAGTTTATTGAAAACTACCATGTAGATGAAGCGGAAGCTGATTTGAC 140
BSNT_03439___ 141 ACAGCTTGCGAATAAAGTTGCTGTCATCCTAGAAAATCACGAGGACCAGG 190
|.||||.||.|..||.||.||.||||||.|.|||||.||..|.|||||||
BL00657___res 141 AAAGCTCGCCAGCAAGGTGGCCGTCATCATGGAAAACCATAAAGACCAGG 190
BSNT_03439___ 191 ---CACTGGCAAGGTCAATCACTTGGGAGCTCGCTGAT-AACTTAACAAG 236
|| ||.||.||.||.||.||||||||.||.||| ||| |.||.||
BL00657___res 191 AGACA---GCCAGATCGATTACATGGGAGCTTGCCGATGAAC-TGACGAG 236
BSNT_03439___ 237 CATTGCCATCATCCAGGATGAGAA-GAACCACTGGTATTCTCC----GAA 281
|||.|||.|||||.|..||||||| ||| .|.||||||||.|| |||
BL00657___res 237 CATCGCCGTCATCAAAAATGAGAATGAA-TATTGGTATTCACCGCGGGAA 285
BSNT_03439___ 282 TGAT-AAAAATCGCCTGTCGTCTATAACGGTTGAGCAAATACAGCATGAC 330
.|| ||||| .||.|.||.||.| |||.|
BL00657___res 286 -CATCAAAAA----GTGGCTTCCATCA-----------------CATTA- 312
BSNT_03439___ 331 AAAGA-CTTAAATA-----------------AAGCTCT--CCAAGACCAT 360
||||| .|||||.| ||||.|| .|||| |||
BL00657___res 313 AAAGATATTAAAAACGATCCAGATCTGAACGAAGCGCTTCGCAAG--CAT 360
BSNT_03439___ 361 AAAAAAGTAAGC--AAACGGACGGGACTGAGCGATACAGACACGGATAAT 408
.||||||| || ||..|||||| |.|.| |.||..|| ||.
BL00657___res 361 CAAAAAGT--GCAGAAGAGGACGG---TTATC--TCCAATCA-----AAA 398
BSNT_03439___ 409 GAACG----CCTGATTGTAGGTGTCCCGTATGAAAAAGACGGAAAGA--A 452
||||| .||||||||.||.||.||.||.|..||||.|| |||| |
BL00657___res 399 GAACGATCAGCTGATTGTCGGCGTACCCTACGGGAAAGGCG--AAGATGA 446
BSNT_03439___ 453 AGGCATGGTCTTTTTATCCCAGTCTTTGCTTGCCGTTAAAGATACAACAA 502
|||||||||.|||.|.||.||.||..|.||||||||.||.|||||.|||.
BL00657___res 447 AGGCATGGTGTTTCTTTCTCAATCGCTTCTTGCCGTCAAGGATACGACAC 496
BSNT_03439___ 503 AACATACGACCCGCTATATTTTTCTTGCCGCTGGAATTGCGATTGTGCTG 552
|.||||||||..|.|||||..|..|||||||||..||||||||||||.|.
BL00657___res 497 AGCATACGACGAGGTATATCCTCTTTGCCGCTGCGATTGCGATTGTGTTA 546
BSNT_03439___ 553 ACCACATTTTTCGCATTCTTTTTATCAAGCAGGGTCACGTACCCTCTCCG 602
||.||..|||||||.|||||..|.||||||.||.|.||.|||||.|||.|
BL00657___res 547 ACGACGATTTTCGCTTTCTTCCTCTCAAGCCGGATTACCTACCCGCTCAG 596
BSNT_03439___ 603 AAAAATGAGAGAAGGTGCGCAGGATTTGGCGAAGGGCAAGTTCGATACAA 652
|||||||.|..|.|||||.|||||.||||||||.||.|||||.|||||.|
BL00657___res 597 AAAAATGCGGCAGGGTGCCCAGGACTTGGCGAAAGGGAAGTTTGATACGA 646
BSNT_03439___ 653 AAATCCCGATTTTAACTCAGGATGAAATCGGTGAACTGGCGACCGCTTTT 702
|.||.||||||.|.||.||||||||||||||.||.|||||||..||.|||
BL00657___res 647 AGATTCCGATTCTGACCCAGGATGAAATCGGCGAGCTGGCGATTGCCTTT 696
BSNT_03439___ 703 AATCAAATGGGCCGGCAGCTTAACTTTCATATCAATGCGCTCAATCAAGA 752
||.||||||||.||.|||||.||.|||||.||.|..||.||||||||.||
BL00657___res 697 AACCAAATGGGGCGCCAGCTGAAGTTTCACATTACGGCACTCAATCAGGA 746
BSNT_03439___ 753 AAAAGAGCAGCTTTCTAACATTTTGAGCAGTATGGCTGACGGGGTTATTA 802
|||.|||||..|.||.||.||.||.|||||||||||.|||||.||.||.|
BL00657___res 747 AAAGGAGCATTTGTCGAATATCTTAAGCAGTATGGCCGACGGCGTGATCA 796
BSNT_03439___ 803 CCATTAATATTGACGGTACGATTCTTGTGACCAACCCGCCGGCTGAACGT 852
||||||||||.|||||.||.||.||||||||.|||||.|||||||||||.
BL00657___res 797 CCATTAATATCGACGGGACAATCCTTGTGACAAACCCTCCGGCTGAACGC 846
BSNT_03439___ 853 TTTCTTCAGGCTTGGTATTATGAACAGAACATGAATATCAAAGAAGGCGA 902
|||.|.|||||||||||||||||.||||||||||||.|.|||||||||.|
BL00657___res 847 TTTTTACAGGCTTGGTATTATGAGCAGAACATGAATGTAAAAGAAGGCCA 896
BSNT_03439___ 903 CAACCTTCCGCCTGAAGCAAAAGAGCTGTTTCAAAACGCTGTTAGCACTG 952
..|.||.||.||.|||||...||||||.|||||||||.|.||.|||||.|
BL00657___res 897 TGAACTGCCTCCCGAAGCGCGAGAGCTTTTTCAAAACACCGTCAGCACGG 946
BSNT_03439___ 953 AAAAAGAACAAATGATTGAGATGACGCTTCAAGGCAGATCATGGGTGCTT 1002
|.|||||.||.||||||||.|||||.||.|||||||||.||||||||||.
BL00657___res 947 AGAAAGAGCAGATGATTGAAATGACCCTGCAAGGCAGAACATGGGTGCTG 996
BSNT_03439___ 1003 TTGATGTCGCCGCTTTATGCGGAA----TCGCACGTCAGAGGAGCGGTTG 1048
.|.|||...|||||.|| .|| ||.||.||..|.||||||||||
BL00657___res 997 CTCATGAGTCCGCTGTA----CAATCAGTCCCATGTACGCGGAGCGGTTG 1042
BSNT_03439___ 1049 CCGTACTGCGTGACATGACAGAAGAACGCCGCCTTGATAAGCTGCGGGAG 1098
||||..||.|.||.|||||.||.|||.|.||.||||||||||||.|..|.
BL00657___res 1043 CCGTGTTGAGGGATATGACGGAGGAAAGACGGCTTGATAAGCTGAGAAAA 1092
BSNT_03439___ 1099 GACTTTATCGCAAATGTCAGTCATGAGCTGAGAACACCGATTTCCATGCT 1148
||.||||||||.||||||||.|||||||||||||||||||||||.|||||
BL00657___res 1093 GATTTTATCGCCAATGTCAGCCATGAGCTGAGAACACCGATTTCGATGCT 1142
BSNT_03439___ 1149 TCAGGGATACAGTGAAGCAATTGTCGATGACATTGCAAGCTCTGAAGAAG 1198
|||.||.|||||||||||.||.||.||.|||||.|||||||||||.||||
BL00657___res 1143 TCAAGGGTACAGTGAAGCGATCGTTGACGACATCGCAAGCTCTGAGGAAG 1192
BSNT_03439___ 1199 ACCGGAAA----GAAATTGCCCAAATCATTTATGACGAATCACTCCGAAT 1244
| ||| |||||.|||||..||||.||||||||.||..|..||||
BL00657___res 1193 A----AAAAAAGGAAATCGCCCAGGTCATCTATGACGAGTCTTTAAGAAT 1238
BSNT_03439___ 1245 GGGCCGTTTAGTTAATGATTTGCTTGATTTAGCCCGAATGGAATCAGGCC 1294
|||..|..|.||.|||||||||||.||..|.|||.|||||||..|.||.|
BL00657___res 1239 GGGAAGGCTTGTGAATGATTTGCTGGACCTTGCCAGAATGGAGGCGGGGC 1288
BSNT_03439___ 1295 ATACAGGCTTACATTATGAAAAAATCAATG-TGAA--------------T 1329
||| ||.|.||| ||.| |||| .
BL00657___res 1289 ATA-----TTTCCTTA----------AACGTTGAACCGGTGGAGCTCCGC 1323
BSNT_03439___ 1330 GAGTTTTTAGAAAAGATCATTC-GGAAGTTTTCCGGTGTTGCGAAAGAAA 1378
||||||||.| |.|||...||| |.|||||||.|||.||.||....||.|
BL00657___res 1324 GAGTTTTTTG-AGAGAGTGTTCAGAAAGTTTTACGGAGTGGCCGGGGACA 1372
BSNT_03439___ 1379 AAAATATT--GCTTTACAAAATGACATTTCTCTCACA------------- 1413
|||||||| |||| |||||||
BL00657___res 1373 AAAATATTACGCTT----------------TCTCACAATCTTGATCTGCA 1406
BSNT_03439___ 1414 -GAAGAGGAATTTATGCTTGATGAAGACAAGATGGAGCAGGTATTTACCA 1462
||||...|||||.||.|||||...|||||.|||||||||||.||.||||
BL00657___res 1407 TGAAGCAAAATTTGTGTTTGATCCGGACAAAATGGAGCAGGTTTTAACCA 1456
BSNT_03439___ 1463 ATTTGATTGATAACGCGCTGCGGCATACTTCAT-CCGGTGGCAGTGTCTC 1511
|..|||||||.||||||.|.||.||||| ..|| ||||.||||..| |.
BL00657___res 1457 ACCTGATTGACAACGCGATCCGCCATAC-AAATGCCGGGGGCACCG--TT 1503
BSNT_03439___ 1512 CATTTC--AGTCCATTCTG-TGAAGGATGGATTGAAAATTGATATCAAAG 1558
|||.|| .||.||.|||| ||||.| .||..||||.||||...|.||||
BL00657___res 1504 CATGTCGATGTGCAGTCTGCTGAAAG-CGGGCTGAAGATTGCCGTGAAAG 1552
BSNT_03439___ 1559 ACTCCGGGTCCGGCATACCGGAAGAAGATCTGCCATTTATCTTTGAGCGG 1608
|||||||...|||.||.||.|||||.||||||||.|||||.|||||.||.
BL00657___res 1553 ACTCCGGCAGCGGGATTCCCGAAGAGGATCTGCCGTTTATTTTTGAACGT 1602
BSNT_03439___ 1609 TTTTATAAGGCAGATAAAGCGCGGACAAGGGGCAGAGCAGGAACCGGGTT 1658
|||||||||||.||||||||..||||.||.||.|.||..||.||.||..|
BL00657___res 1603 TTTTATAAGGCCGATAAAGCAAGGACGAGAGGAAAAGGCGGGACTGGCCT 1652
BSNT_03439___ 1659 AGGGCTGGCTATCGTTAAAAATATCGTGGAAGCCCACAACGGCTCAATCA 1708
.|||||.||.|||||.|||||.|||||.||.||.||||||||.||.||||
BL00657___res 1653 CGGGCTTGCGATCGTCAAAAACATCGTCGATGCACACAACGGATCGATCA 1702
BSNT_03439___ 1709 CTGTGCACAGC--------CGAATAGATAAAGGAACAACATTTACTTTTT 1750
|.||.|||||| || ||||.||..|.||.||.||.|
BL00657___res 1703 CCGTCCACAGCATGCTGAACG--------AAGGTACTTCCTTCACGTTCT 1744
BSNT_03439___ 1751 ATATTCCGACAAAACGGTAA---------------------- 1770
|.|||||.|.||| |||
BL00657___res 1745 ACATTCCAAGAAA----TAAGCAGGATGATGGCCAAATTTGA 1782
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