Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03439 and BL00657

See Amino acid alignment / Visit BSNT_03439 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:25
# Commandline: needle
#    -asequence dna-align/BSNT_03439___resE.1.5803.seq
#    -bsequence dna-align/BL00657___resE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03439___resE-BL00657___resE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03439___resE-BL00657___resE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03439___resE
# 2: BL00657___resE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1892
# Identity:    1303/1892 (68.9%)
# Similarity:  1303/1892 (68.9%)
# Gaps:         232/1892 (12.3%)
# Score: 4497.5
# 
#
#=======================================

BSNT_03439___      1 ATGAAATTTTGGAAAAGCGTAGTAGGCAAGCTGTGGTTTACGATCC----     46
                     |||||.||||||||.||||||||.||.||.|||||||||||.||.|    
BL00657___res      1 ATGAAGTTTTGGAAGAGCGTAGTCGGTAAACTGTGGTTTACCATACTGCT     50

BSNT_03439___     47 -----TTTCACTCGTCTTGATCGTATTGTTCATTTTAACGGTTCTTT-TG     90
                          |||||.|.||||      ||||..||.||   || ||||||| ||
BL00657___res     51 TTTGGTTTCATTTGTCT------TATTTATCCTT---AC-GTTCTTTCTG     90

BSNT_03439___     91 CTGGAGTTTATTGAAAACTACCATGTGGAAGAAGCTGAGAATGATTTAAC    140
                     ||.|||||||||||||||||||||||.||.|||||.||...||||||.||
BL00657___res     91 CTCGAGTTTATTGAAAACTACCATGTAGATGAAGCGGAAGCTGATTTGAC    140

BSNT_03439___    141 ACAGCTTGCGAATAAAGTTGCTGTCATCCTAGAAAATCACGAGGACCAGG    190
                     |.||||.||.|..||.||.||.||||||.|.|||||.||..|.|||||||
BL00657___res    141 AAAGCTCGCCAGCAAGGTGGCCGTCATCATGGAAAACCATAAAGACCAGG    190

BSNT_03439___    191 ---CACTGGCAAGGTCAATCACTTGGGAGCTCGCTGAT-AACTTAACAAG    236
                        ||   ||.||.||.||.||.||||||||.||.||| ||| |.||.||
BL00657___res    191 AGACA---GCCAGATCGATTACATGGGAGCTTGCCGATGAAC-TGACGAG    236

BSNT_03439___    237 CATTGCCATCATCCAGGATGAGAA-GAACCACTGGTATTCTCC----GAA    281
                     |||.|||.|||||.|..||||||| ||| .|.||||||||.||    |||
BL00657___res    237 CATCGCCGTCATCAAAAATGAGAATGAA-TATTGGTATTCACCGCGGGAA    285

BSNT_03439___    282 TGAT-AAAAATCGCCTGTCGTCTATAACGGTTGAGCAAATACAGCATGAC    330
                      .|| |||||    .||.|.||.||.|                 |||.| 
BL00657___res    286 -CATCAAAAA----GTGGCTTCCATCA-----------------CATTA-    312

BSNT_03439___    331 AAAGA-CTTAAATA-----------------AAGCTCT--CCAAGACCAT    360
                     ||||| .|||||.|                 ||||.||  .||||  |||
BL00657___res    313 AAAGATATTAAAAACGATCCAGATCTGAACGAAGCGCTTCGCAAG--CAT    360

BSNT_03439___    361 AAAAAAGTAAGC--AAACGGACGGGACTGAGCGATACAGACACGGATAAT    408
                     .|||||||  ||  ||..||||||   |.|.|  |.||..||     ||.
BL00657___res    361 CAAAAAGT--GCAGAAGAGGACGG---TTATC--TCCAATCA-----AAA    398

BSNT_03439___    409 GAACG----CCTGATTGTAGGTGTCCCGTATGAAAAAGACGGAAAGA--A    452
                     |||||    .||||||||.||.||.||.||.|..||||.||  ||||  |
BL00657___res    399 GAACGATCAGCTGATTGTCGGCGTACCCTACGGGAAAGGCG--AAGATGA    446

BSNT_03439___    453 AGGCATGGTCTTTTTATCCCAGTCTTTGCTTGCCGTTAAAGATACAACAA    502
                     |||||||||.|||.|.||.||.||..|.||||||||.||.|||||.|||.
BL00657___res    447 AGGCATGGTGTTTCTTTCTCAATCGCTTCTTGCCGTCAAGGATACGACAC    496

BSNT_03439___    503 AACATACGACCCGCTATATTTTTCTTGCCGCTGGAATTGCGATTGTGCTG    552
                     |.||||||||..|.|||||..|..|||||||||..||||||||||||.|.
BL00657___res    497 AGCATACGACGAGGTATATCCTCTTTGCCGCTGCGATTGCGATTGTGTTA    546

BSNT_03439___    553 ACCACATTTTTCGCATTCTTTTTATCAAGCAGGGTCACGTACCCTCTCCG    602
                     ||.||..|||||||.|||||..|.||||||.||.|.||.|||||.|||.|
BL00657___res    547 ACGACGATTTTCGCTTTCTTCCTCTCAAGCCGGATTACCTACCCGCTCAG    596

BSNT_03439___    603 AAAAATGAGAGAAGGTGCGCAGGATTTGGCGAAGGGCAAGTTCGATACAA    652
                     |||||||.|..|.|||||.|||||.||||||||.||.|||||.|||||.|
BL00657___res    597 AAAAATGCGGCAGGGTGCCCAGGACTTGGCGAAAGGGAAGTTTGATACGA    646

BSNT_03439___    653 AAATCCCGATTTTAACTCAGGATGAAATCGGTGAACTGGCGACCGCTTTT    702
                     |.||.||||||.|.||.||||||||||||||.||.|||||||..||.|||
BL00657___res    647 AGATTCCGATTCTGACCCAGGATGAAATCGGCGAGCTGGCGATTGCCTTT    696

BSNT_03439___    703 AATCAAATGGGCCGGCAGCTTAACTTTCATATCAATGCGCTCAATCAAGA    752
                     ||.||||||||.||.|||||.||.|||||.||.|..||.||||||||.||
BL00657___res    697 AACCAAATGGGGCGCCAGCTGAAGTTTCACATTACGGCACTCAATCAGGA    746

BSNT_03439___    753 AAAAGAGCAGCTTTCTAACATTTTGAGCAGTATGGCTGACGGGGTTATTA    802
                     |||.|||||..|.||.||.||.||.|||||||||||.|||||.||.||.|
BL00657___res    747 AAAGGAGCATTTGTCGAATATCTTAAGCAGTATGGCCGACGGCGTGATCA    796

BSNT_03439___    803 CCATTAATATTGACGGTACGATTCTTGTGACCAACCCGCCGGCTGAACGT    852
                     ||||||||||.|||||.||.||.||||||||.|||||.|||||||||||.
BL00657___res    797 CCATTAATATCGACGGGACAATCCTTGTGACAAACCCTCCGGCTGAACGC    846

BSNT_03439___    853 TTTCTTCAGGCTTGGTATTATGAACAGAACATGAATATCAAAGAAGGCGA    902
                     |||.|.|||||||||||||||||.||||||||||||.|.|||||||||.|
BL00657___res    847 TTTTTACAGGCTTGGTATTATGAGCAGAACATGAATGTAAAAGAAGGCCA    896

BSNT_03439___    903 CAACCTTCCGCCTGAAGCAAAAGAGCTGTTTCAAAACGCTGTTAGCACTG    952
                     ..|.||.||.||.|||||...||||||.|||||||||.|.||.|||||.|
BL00657___res    897 TGAACTGCCTCCCGAAGCGCGAGAGCTTTTTCAAAACACCGTCAGCACGG    946

BSNT_03439___    953 AAAAAGAACAAATGATTGAGATGACGCTTCAAGGCAGATCATGGGTGCTT   1002
                     |.|||||.||.||||||||.|||||.||.|||||||||.||||||||||.
BL00657___res    947 AGAAAGAGCAGATGATTGAAATGACCCTGCAAGGCAGAACATGGGTGCTG    996

BSNT_03439___   1003 TTGATGTCGCCGCTTTATGCGGAA----TCGCACGTCAGAGGAGCGGTTG   1048
                     .|.|||...|||||.||    .||    ||.||.||..|.||||||||||
BL00657___res    997 CTCATGAGTCCGCTGTA----CAATCAGTCCCATGTACGCGGAGCGGTTG   1042

BSNT_03439___   1049 CCGTACTGCGTGACATGACAGAAGAACGCCGCCTTGATAAGCTGCGGGAG   1098
                     ||||..||.|.||.|||||.||.|||.|.||.||||||||||||.|..|.
BL00657___res   1043 CCGTGTTGAGGGATATGACGGAGGAAAGACGGCTTGATAAGCTGAGAAAA   1092

BSNT_03439___   1099 GACTTTATCGCAAATGTCAGTCATGAGCTGAGAACACCGATTTCCATGCT   1148
                     ||.||||||||.||||||||.|||||||||||||||||||||||.|||||
BL00657___res   1093 GATTTTATCGCCAATGTCAGCCATGAGCTGAGAACACCGATTTCGATGCT   1142

BSNT_03439___   1149 TCAGGGATACAGTGAAGCAATTGTCGATGACATTGCAAGCTCTGAAGAAG   1198
                     |||.||.|||||||||||.||.||.||.|||||.|||||||||||.||||
BL00657___res   1143 TCAAGGGTACAGTGAAGCGATCGTTGACGACATCGCAAGCTCTGAGGAAG   1192

BSNT_03439___   1199 ACCGGAAA----GAAATTGCCCAAATCATTTATGACGAATCACTCCGAAT   1244
                     |    |||    |||||.|||||..||||.||||||||.||..|..||||
BL00657___res   1193 A----AAAAAAGGAAATCGCCCAGGTCATCTATGACGAGTCTTTAAGAAT   1238

BSNT_03439___   1245 GGGCCGTTTAGTTAATGATTTGCTTGATTTAGCCCGAATGGAATCAGGCC   1294
                     |||..|..|.||.|||||||||||.||..|.|||.|||||||..|.||.|
BL00657___res   1239 GGGAAGGCTTGTGAATGATTTGCTGGACCTTGCCAGAATGGAGGCGGGGC   1288

BSNT_03439___   1295 ATACAGGCTTACATTATGAAAAAATCAATG-TGAA--------------T   1329
                     |||     ||.|.|||          ||.| ||||              .
BL00657___res   1289 ATA-----TTTCCTTA----------AACGTTGAACCGGTGGAGCTCCGC   1323

BSNT_03439___   1330 GAGTTTTTAGAAAAGATCATTC-GGAAGTTTTCCGGTGTTGCGAAAGAAA   1378
                     ||||||||.| |.|||...||| |.|||||||.|||.||.||....||.|
BL00657___res   1324 GAGTTTTTTG-AGAGAGTGTTCAGAAAGTTTTACGGAGTGGCCGGGGACA   1372

BSNT_03439___   1379 AAAATATT--GCTTTACAAAATGACATTTCTCTCACA-------------   1413
                     ||||||||  ||||                |||||||             
BL00657___res   1373 AAAATATTACGCTT----------------TCTCACAATCTTGATCTGCA   1406

BSNT_03439___   1414 -GAAGAGGAATTTATGCTTGATGAAGACAAGATGGAGCAGGTATTTACCA   1462
                      ||||...|||||.||.|||||...|||||.|||||||||||.||.||||
BL00657___res   1407 TGAAGCAAAATTTGTGTTTGATCCGGACAAAATGGAGCAGGTTTTAACCA   1456

BSNT_03439___   1463 ATTTGATTGATAACGCGCTGCGGCATACTTCAT-CCGGTGGCAGTGTCTC   1511
                     |..|||||||.||||||.|.||.||||| ..|| ||||.||||..|  |.
BL00657___res   1457 ACCTGATTGACAACGCGATCCGCCATAC-AAATGCCGGGGGCACCG--TT   1503

BSNT_03439___   1512 CATTTC--AGTCCATTCTG-TGAAGGATGGATTGAAAATTGATATCAAAG   1558
                     |||.||  .||.||.|||| ||||.| .||..||||.||||...|.||||
BL00657___res   1504 CATGTCGATGTGCAGTCTGCTGAAAG-CGGGCTGAAGATTGCCGTGAAAG   1552

BSNT_03439___   1559 ACTCCGGGTCCGGCATACCGGAAGAAGATCTGCCATTTATCTTTGAGCGG   1608
                     |||||||...|||.||.||.|||||.||||||||.|||||.|||||.||.
BL00657___res   1553 ACTCCGGCAGCGGGATTCCCGAAGAGGATCTGCCGTTTATTTTTGAACGT   1602

BSNT_03439___   1609 TTTTATAAGGCAGATAAAGCGCGGACAAGGGGCAGAGCAGGAACCGGGTT   1658
                     |||||||||||.||||||||..||||.||.||.|.||..||.||.||..|
BL00657___res   1603 TTTTATAAGGCCGATAAAGCAAGGACGAGAGGAAAAGGCGGGACTGGCCT   1652

BSNT_03439___   1659 AGGGCTGGCTATCGTTAAAAATATCGTGGAAGCCCACAACGGCTCAATCA   1708
                     .|||||.||.|||||.|||||.|||||.||.||.||||||||.||.||||
BL00657___res   1653 CGGGCTTGCGATCGTCAAAAACATCGTCGATGCACACAACGGATCGATCA   1702

BSNT_03439___   1709 CTGTGCACAGC--------CGAATAGATAAAGGAACAACATTTACTTTTT   1750
                     |.||.||||||        ||        ||||.||..|.||.||.||.|
BL00657___res   1703 CCGTCCACAGCATGCTGAACG--------AAGGTACTTCCTTCACGTTCT   1744

BSNT_03439___   1751 ATATTCCGACAAAACGGTAA----------------------   1770
                     |.|||||.|.|||    |||                      
BL00657___res   1745 ACATTCCAAGAAA----TAAGCAGGATGATGGCCAAATTTGA   1782


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.