Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03433 and BL00647

See Amino acid alignment / Visit BSNT_03433 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:25
# Commandline: needle
#    -asequence dna-align/BSNT_03433___serA.1.5803.seq
#    -bsequence dna-align/BL00647___serA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03433___serA-BL00647___serA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03433___serA-BL00647___serA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03433___serA
# 2: BL00647___serA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1590
# Identity:    1211/1590 (76.2%)
# Similarity:  1211/1590 (76.2%)
# Gaps:          24/1590 ( 1.5%)
# Score: 4452.0
# 
#
#=======================================

BSNT_03433___      1 ATGTTTCGAGTATTGGTCTCAGACAAAATGAGCAACGACGGTTTACAGCC     50
                     |||||||||||||||||||||||.||||||..||.||||||..|..|.||
BL00647___ser      1 ATGTTTCGAGTATTGGTCTCAGATAAAATGTCCAGCGACGGCCTCAAACC     50

BSNT_03433___     51 ACTTATTGAATCAGACTTTATTGAAATCGTTCAAAAAAACGTAGCAGATG    100
                     |.|.||.|||.||||.|||||||||||.||..||||.||.||.||.||.|
BL00647___ser     51 ATTAATGGAAGCAGATTTTATTGAAATTGTAGAAAAGAATGTTGCGGAAG    100

BSNT_03433___    101 CAGAAGATGAATTACATACTTTTGATGCTCTTTTGGTGCGAAGTGCGACA    150
                     |.|||||.||..|.|||||.|||||.||.||.||||||||.||.||.||.
BL00647___ser    101 CGGAAGACGAGCTTCATACGTTTGACGCGCTCTTGGTGCGGAGCGCCACG    150

BSNT_03433___    151 AAAGTAACAGAAGACCTTTTCAACAAAATGACTTCTTTAAAAATTGTCGG    200
                     ||.|||||.|||||.||.||.||.||.||||||||..|.|||||.||||.
BL00647___ser    151 AAGGTAACCGAAGAGCTGTTTAAAAAGATGACTTCGCTGAAAATCGTCGC    200

BSNT_03433___    201 AAGAGCCGGTGTCGGTGTCGATAATATCGATATTGATGAGGCTACGAAAC    250
                     .|||||.||||||||.|||||.||||||||||||||.|||||.||.||||
BL00647___ser    201 CAGAGCAGGTGTCGGCGTCGACAATATCGATATTGACGAGGCGACAAAAC    250

BSNT_03433___    251 ACGGGGTAATCGTGATCAATGCTCCGAACGGCAACACCATTTCGACAGCT    300
                     ||||.||.|||||..|.||.||.||.|||||.||.||.|||||.||.|||
BL00647___ser    251 ACGGTGTTATCGTCGTAAACGCGCCAAACGGGAATACAATTTCAACCGCT    300

BSNT_03433___    301 GAGCATACATTTGCAATGATATCTTCTTTAATGAGACACATTCCGCAGGC    350
                     ||.|||||.|||||||||.|.||..|.|||||||||||.|||||||||||
BL00647___ser    301 GAACATACCTTTGCAATGTTTTCAGCGTTAATGAGACATATTCCGCAGGC    350

BSNT_03433___    351 TAATATCTCAGTGAAATCCAGAGAGTGGAACCGCACAGCTTATGTCGGTT    400
                     .||.|||||.||||||||.||.||||||||.||..|.|||||.|||||||
BL00647___ser    351 AAACATCTCCGTGAAATCAAGGGAGTGGAATCGTTCGGCTTACGTCGGTT    400

BSNT_03433___    401 CAGAGCTTTATGGAAAAACGCTTGGTATTGTAGGATTAGGCCGAATCGGA    450
                     ||||||||||.|||||||||||.||.||..|.|||.|.|||||.||||||
BL00647___ser    401 CAGAGCTTTACGGAAAAACGCTCGGCATCATCGGAATGGGCCGCATCGGA    450

BSNT_03433___    451 AGTGAAATTGCACAG-CGTGCGAGAGCATTCGGTATGACTGTGCACGTTT    499
                     ||.|||||.|| .|| ||.||.|.|||||||||||||||.||.||.||.|
BL00647___ser    451 AGCGAAATCGC-GAGCCGCGCAAAAGCATTCGGTATGACCGTTCATGTAT    499

BSNT_03433___    500 TTGATCCTTTCTTAACGGAAGAAAGAGCGAAAAAAATCGGCGTAAACAGC    549
                     ||||.||.|||.|.||..|||||||.||.|..||..|||||||.|||  .
BL00647___ser    500 TTGACCCGTTCCTGACCCAAGAAAGGGCAAGCAAGCTCGGCGTTAAC--G    547

BSNT_03433___    550 CGTACA--TTTGAAGAAGTGCTTGAAAGTGCGGATATCATTACCGTTCAC    597
                     ||.|||  |||||||||||.||.|.|.|.||.||.||||||||.|||||.
BL00647___ser    548 CGAACAGCTTTGAAGAAGTTCTGGCATGCGCCGACATCATTACGGTTCAT    597

BSNT_03433___    598 ACGCCTTTAACAAAAGAAACAAAAGG-CTTATTGAATAAAGAAACGATTG    646
                     ||.||..|.||.||||||||.||.|| ||| |||||.||||||||.||.|
BL00647___ser    598 ACCCCGCTCACGAAAGAAACGAAGGGACTT-TTGAACAAAGAAACCATCG    646

BSNT_03433___    647 CAAAAACGAAAAAAGGCGTTCGCTTAATTAACTGTGCGCGAGGCGGAATT    696
                     ||||||||||||||||||||||..|..||||||||||..|||||||.||.
BL00647___ser    647 CAAAAACGAAAAAAGGCGTTCGTCTCGTTAACTGTGCAAGAGGCGGCATC    696

BSNT_03433___    697 ATCGATGAAGCAGCACTTCTCGAAGCTTTGGAAAACGGGCATGTTGCGGG    746
                     ||||||||||||||.|||.|.||||||.||||||.|||.|||||.||.||
BL00647___ser    697 ATCGATGAAGCAGCGCTTTTGGAAGCTCTGGAAAGCGGACATGTCGCTGG    746

BSNT_03433___    747 AGCGGCGCTT-GACGTTTTCGAAGTTGAACCGCCAGTTGA--CAATAAAC    793
                     .||.|| ||| ||.||.||||||||.||.||.||.||.||  ||  ||||
BL00647___ser    747 CGCTGC-CTTGGATGTATTCGAAGTCGAGCCTCCGGTCGATTCA--AAAC    793

BSNT_03433___    794 TTGTTGATCATCCATTAGTCATTGCCACTCCTCACTTGGGAGCATCAACG    843
                     |..|.||||||||..|.||..|.||.||||||||||||||.||.|||||.
BL00647___ser    794 TGATCGATCATCCGCTTGTAGTCGCGACTCCTCACTTGGGCGCCTCAACA    843

BSNT_03433___    844 AAAGAAGCACAGCTCAATGTCGCCGCCCAAGTGTCAGAAGAAGTTCTGCA    893
                     ||||||||.|||||.||||||||.||.||||||||.||||||||.||.||
BL00647___ser    844 AAAGAAGCCCAGCTGAATGTCGCTGCACAAGTGTCCGAAGAAGTCCTTCA    893

BSNT_03433___    894 GTTCGCAAAAGGCCTGCCTGTCATGTCAGCTATCAACCTGCCTGCCATGA    943
                     ||..||..||||....|||||.|||||.||.||||||||.||.|||||||
BL00647___ser    894 GTATGCGCAAGGAAACCCTGTGATGTCCGCGATCAACCTTCCGGCCATGA    943

BSNT_03433___    944 CAAAGGATGAATTTGCTAAAATTAAACCCTACCATCAAATTGCAGGAAAA    993
                     ||||||||..|||.|..|||||..|.||.||.|||||..||||  .||.|
BL00647___ser    944 CAAAGGATTCATTCGAAAAAATCCAGCCTTATCATCAGTTTGC--CAATA    991

BSNT_03433___    994 --ATTGGCAGCCTTGTATCACAGTGCATGAAAGAACCAGTACAGGATGTT   1041
                       ||.||.|.||||||.||.|||||||||||.||.||.||.||.|||||.
BL00647___ser    992 CGATCGGAAACCTTGTGTCTCAGTGCATGAATGAGCCTGTTCAAGATGTA   1041

BSNT_03433___   1042 GCCATTCAATATGAAGGCACAATTGCTAAACTTGAAACATCGTTCATTAC   1091
                     |||||.||||||||||||.|.||.||.|||||||||||.||.||.|||||
BL00647___ser   1042 GCCATCCAATATGAAGGCTCCATCGCCAAACTTGAAACGTCATTTATTAC   1091

BSNT_03433___   1092 -AAAAGCCCTTCTGTCAGGCTTTTTAAAACCGCGCGTTGACTCTACTGTT   1140
                      ||||| ||||.||.|.||.|||.|.||.|||.|.||.|...||||.|||
BL00647___ser   1092 GAAAAG-CCTTTTGGCCGGATTTCTGAAGCCGAGGGTCGCGGCTACCGTT   1140

BSNT_03433___   1141 AACGAGGTCAATGCCGGGGGTGTCGCAAAAGAACGCGGCATCAGCTTCAG   1190
                     |||||.||.||||||||....||.||.|||||.|||||||||||||||||
BL00647___ser   1141 AACGAAGTGAATGCCGGCACCGTTGCGAAAGAGCGCGGCATCAGCTTCAG   1190

BSNT_03433___   1191 TGAAAAAATTTCCTCTTCTGAATCTGGATACGATAACTGCATCAGCGTAA   1240
                     .|||||||||||.||...|||.||.||.||.||.|||||||||...||.|
BL00647___ser   1191 CGAAAAAATTTCTTCCAATGAGTCAGGCTATGAAAACTGCATCTCTGTGA   1240

BSNT_03433___   1241 AAGTGACAGGAGACCGCAGC-ACCTTTACTGTAACGGCTACGTATATTCC   1289
                     ..||.||.||||| .|.|.| ||.||..||.|||..||.|||||.|||||
BL00647___ser   1241 CTGTCACGGGAGA-TGTAACAACATTCTCTTTAAGAGCGACGTACATTCC   1289

BSNT_03433___   1290 TCATTTCGGAGAACGAATTGTCGAGATCAATGGATTTAATATTGATTTTT   1339
                     .||.|||||.|.|||.||.||.|...|.||.||.|||.||||||||||||
BL00647___ser   1290 GCACTTCGGCGGACGCATCGTTGCCTTAAACGGCTTTGATATTGATTTTT   1339

BSNT_03433___   1340 ATCCGACAGGTCACTTGGTGTATATCCAGCATCAAGATACAACAGGTGTC   1389
                     |||||.|.||.|||.|.||.||.||.||.||.||.||||.|.||||.|..
BL00647___ser   1340 ATCCGGCTGGACACCTTGTCTACATTCACCACCAGGATAAACCAGGGGCT   1389

BSNT_03433___   1390 ATCGGCCGAGTAGGACGTATTCTCGGAGATAATGATATTAACATTGCAAC   1439
                     |||||||..||.|||||.|||.|.|||||..||||.||.||.||.||.||
BL00647___ser   1390 ATCGGCCATGTCGGACGAATTTTAGGAGACCATGACATCAATATCGCCAC   1439

BSNT_03433___   1440 CATGCAGGTTGGCCGTAAGGAAAAAGGCGGAGAAGCCATCATGATGCTTT   1489
                     .||||||||.|||||.||.|||||||||||||||||.|||||||||||||
BL00647___ser   1440 TATGCAGGTAGGCCGAAAAGAAAAAGGCGGAGAAGCGATCATGATGCTTT   1489

BSNT_03433___   1490 CCTTTGACAGACATCTGGAAGATAAAATTGTGAAAGAACTAACAAATGTC   1539
                     ||||||||.|.||.||.||.||..|.|||.|....||.||.|.|||..||
BL00647___ser   1490 CCTTTGACCGCCACCTTGAGGACGATATTTTAGCTGAGCTGAAAAACATC   1539

BSNT_03433___   1540 CCTGATATTGTGTCCG-TGAAGCTCATTGATCTGCCATAA   1578
                     ||.|||||.|||||.| |.|||| |||.||.||.||.|||
BL00647___ser   1540 CCGGATATCGTGTCTGTTAAAGC-CATCGACCTTCCTTAA   1578


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