Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04063 and BL00641

See Amino acid alignment / Visit BSNT_04063 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:07
# Commandline: needle
#    -asequence dna-align/BSNT_04063___minD.1.5803.seq
#    -bsequence dna-align/BL00641___minD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04063___minD-BL00641___minD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04063___minD-BL00641___minD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04063___minD
# 2: BL00641___minD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 811
# Identity:     625/811 (77.1%)
# Similarity:   625/811 (77.1%)
# Gaps:           8/811 ( 1.0%)
# Score: 2390.0
# 
#
#=======================================

BSNT_04063___      1 TTGGGTGAGGCTATCGTAATAACTTCGGGAAAAGGCGGAGTAGGTAAGAC     50
                     ||||||||.||||||||||||||.|||||.||||||||||||||.||.||
BL00641___min      1 TTGGGTGAAGCTATCGTAATAACCTCGGGGAAAGGCGGAGTAGGCAAAAC     50

BSNT_04063___     51 AACAACATCTGCGAACCTCGGTACCGCCTTAGCCATTTTAGGGAAGCGCG    100
                     .||.||.|||||.||.||.||.||||||||.||||||||.|||||.||.|
BL00641___min     51 GACGACGTCTGCAAATCTTGGCACCGCCTTGGCCATTTTGGGGAAACGGG    100

BSNT_04063___    101 TATGCTTAGTAGATACTGATATAGGACTGCGCAACCTTGATGTTGTAATG    150
                     ||||..|.||.||.||.|||||.||.||||||||.|||||||||||.|||
BL00641___min    101 TATGTCTCGTTGACACGGATATCGGCCTGCGCAATCTTGATGTTGTCATG    150

BSNT_04063___    151 GGTCTTGAAAATAGAATTATTTACGATCTGGTAGACGTTGTAGAGGGCAG    200
                     ||.||||||||||||||.||.||.|||.||||.||.||.||.||||...|
BL00641___min    151 GGCCTTGAAAATAGAATCATATATGATTTGGTGGATGTCGTTGAGGAACG    200

BSNT_04063___    201 ATGCAAAATGCATCAGGCGCTCGTAAAAGACAAACGTTTCGATGATCTGC    250
                     |||||||||.|||||||||||.||.|||||.||.||.||.||||||.|||
BL00641___min    201 ATGCAAAATCCATCAGGCGCTTGTGAAAGATAAGCGCTTTGATGATTTGC    250

BSNT_04063___    251 TCTATTTAATGCCCGCTGCTCAAACGAGCGATAAGACAGCTGTTGCTCCT    300
                     |.|||||..||||.||.|||||.||.|||||||||.|.||||||...||.
BL00641___min    251 TTTATTTGCTGCCGGCCGCTCAGACAAGCGATAAGTCGGCTGTTTTGCCC    300

BSNT_04063___    301 GAACAAATTAAAAACATGGTCCAAGAGCTCAAACAGGAATTTGACTATGT    350
                     ||.||.||....||..||.||||..||||||||||.||.||.|||||..|
BL00641___min    301 GAGCAGATGGTCAAGCTGATCCAGCAGCTCAAACAAGACTTCGACTACAT    350

BSNT_04063___    351 CATCATAGACTGTCCTGCCGGAATCGAGCAAGGGTACAAAAATGCCGTTT    400
                     ..||||.|||||.|||||.||.||.||||||||.||.||||||||.||.|
BL00641___min    351 TGTCATTGACTGCCCTGCAGGGATTGAGCAAGGTTATAAAAATGCGGTCT    400

BSNT_04063___    401 CCGGAGCTGATAAAGCGATTGTGGTCACTACGCCTGAAATCTCAGCTGTT    450
                     |.||.||.||.||.||||||||.||.||.||.||.||||||||.||||||
BL00641___min    401 CGGGCGCAGACAAGGCGATTGTCGTGACAACACCGGAAATCTCCGCTGTT    450

BSNT_04063___    451 CGTGATGCTGACCGTATTATAGGGCTGCTGGAGCAAGAAGAAAATGTTGA    500
                     |||||.||||||||.||.||.||.|||||.||..|.|||||||||.||||
BL00641___min    451 CGTGACGCTGACCGGATCATCGGCCTGCTTGAAAAGGAAGAAAATATTGA    500

BSNT_04063___    501 ACCGCCGCGGCTCGTTGTTAACAGAATCAGAAATCACCTGATGAAAAACG    550
                     .||||||.|.||.||.||.|||.|.|||.|.||.|||.|.||||||||||
BL00641___min    501 GCCGCCGAGACTTGTCGTCAACCGGATCCGCAACCACTTAATGAAAAACG    550

BSNT_04063___    551 GTGACACGATGGATATCGACGAAATCGTACAGCATCTGTCGATCGATTTG    600
                     |.||.|||.|||||.|.||.|||.||.|.|||||..||||||||||..||
BL00641___min    551 GCGATACGCTGGATGTTGATGAAGTCATTCAGCACTTGTCGATCGAACTG    600

BSNT_04063___    601 CTCGGAATCGTGGCTGATGATGATGAAGTCATTAAAGCTTCCAATCATGG    650
                     .||||.||.||.||.||||||||||||||.|||||||||||||||.|.||
BL00641___min    601 ATCGGTATTGTTGCGGATGATGATGAAGTGATTAAAGCTTCCAATAACGG    650

BSNT_04063___    651 CGAACCGATTGCGATGGACCCTAA----AAACCGCGCTTCCATTGCATAT    696
                     .||.||..|.|..||||||||.||    |||    |||||.||.|||||.
BL00641___min    651 GGAGCCTGTCGTCATGGACCCGAATAATAAA----GCTTCAATCGCATAC    696

BSNT_04063___    697 CGCAATATTGCCCGCCGCATCTTAGGTGAATCTGTTCCTTTACAGGTGCT    746
                     ||.||.||.|||||||||.|..|.||.||||||||.|||||||||..|.|
BL00641___min    697 CGGAACATCGCCCGCCGCGTGCTGGGCGAATCTGTGCCTTTACAGTCGTT    746

BSNT_04063___    747 TGAAGAGCAAAACAAAGGAATGATGGCTAAGATTAAGTCATTTTTCGGAG    796
                     ||||||..||||.|||||..|..|.||.||||||||.|||||||||||.|
BL00641___min    747 TGAAGAAGAAAATAAAGGCGTTTTCGCAAAGATTAAATCATTTTTCGGCG    796

BSNT_04063___    797 TAAGATCTTAA    807
                     ||.|..|||||
BL00641___min    797 TACGCGCTTAA    807


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