Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04070 and BL00636
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:07
# Commandline: needle
# -asequence dna-align/BSNT_04070___radC.1.5803.seq
# -bsequence dna-align/BL00636___radC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04070___radC-BL00636___radC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04070___radC-BL00636___radC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04070___radC
# 2: BL00636___radC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 706
# Identity: 492/706 (69.7%)
# Similarity: 492/706 (69.7%)
# Gaps: 41/706 ( 5.8%)
# Score: 1644.0
#
#
#=======================================
BSNT_04070___ 1 TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCA--AA 48
||.|||.|.||||||||.|| |.| ||
BL00636___rad 1 ---------------------TTGAAATTAAAAGATTTTCC--TGATGAA 27
BSNT_04070___ 49 GAAAAGCCAAGAGAACGGCTCCTGAAAGTCGGAGCCGAGAACTTAG-CGA 97
||||.||||||.||.||.||.||.||....||.||||| ||.||.| |.|
BL00636___rad 28 GAAAGGCCAAGGGAGCGCCTTCTCAACACAGGCGCCGA-AAGTTTGTCAA 76
BSNT_04070___ 98 ATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCT 147
|.||||||||..|.||.|||.|..|..|.||.||.||.|||.|.|||||.
BL00636___rad 77 ACCATGAACTGCTTGCGATACTGCTCAGAACCGGTACGAAAAAAGAATCG 126
BSNT_04070___ 148 GTTTTGGACCTGTCAAACCGGCTGCTGCGCTCA----TTTGACGGGCTGC 193
|||.|..|.||.||||.||||||||| ||| ||||||||.||.|
BL00636___rad 127 GTTCTTCAGCTTTCAAGCCGGCTGCT----TCAAACGTTTGACGGCCTCC 172
BSNT_04070___ 194 GCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCA-TCCCGGGAAT 242
|..||.|.||.||||||||.|..||.|||||.||.|||| |.||||| ||
BL00636___rad 173 GTTTGTTAAAAGAAGCATCCGCCGAGGAGCTTTCAAGCATTTCCGGG-AT 221
BSNT_04070___ 243 CGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCC 292
|||....|.||||||..|.||.||..||||.||..||||||||||..|.|
BL00636___rad 222 CGGCCGCGCAAAAGCCGTGCAGATTTTGGCGGCCCTTGAGCTTGGCCGGC 271
BSNT_04070___ 293 GGATTCATAAATTAGCCAACGAAGAACATTTCGTTATTCGCTCCCCGGAA 342
|.|||||.|...|.||...|.||||.|.||..||.|||||.|..||.|||
BL00636___rad 272 GCATTCACAGTCTGGCTTGCAAAGACCGTTATGTGATTCGTTTTCCCGAA 321
BSNT_04070___ 343 GACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCA 392
||.|..||.|||.||.|.||||.|||||||||||||.|..|.||||||||
BL00636___rad 322 GATGCGGCCAATTTTTTAATGGGGGATATGCGCTTTCTCTCTCAGGAGCA 371
BSNT_04070___ 393 TTTTGTCTGTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCA 442
.||.||.|||.|.||..|.||.||.|||||.||.||.|||||.||.||||
BL00636___rad 372 CTTCGTATGTGTGTATCTGAACACGAAAAACCAGGTGATCCACAAGCGCA 421
BSNT_04070___ 443 CCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCACCCGCGAGAGGTG 492
|.||.|||||.||.||||||||.||.||.||.|||||.|||.|.||.|||
BL00636___rad 422 CGGTTTTTATAGGGAGCCTGAACTCTTCAATCGTCCATCCGAGGGAAGTG 471
BSNT_04070___ 493 TTTAAAGAAGCGTTTAAA-CGATCTGCCGCTTCCTTTATCTGTGTTCATA 541
||||||||||| |||||| ||.||.||.|||||.||.|||||.||.||.|
BL00636___rad 472 TTTAAAGAAGC-TTTAAAGCGCTCCGCAGCTTCATTCATCTGCGTCCACA 520
BSNT_04070___ 542 ATCATCCTTCTGGAGATCCGACGCCGAGCAGGGAAGATATTGAAGTGACA 591
|||||||.||.|||||||||.|.||.|||.|.|||||.||.|||||.|||
BL00636___rad 521 ATCATCCGTCCGGAGATCCGGCTCCAAGCCGCGAAGACATAGAAGTTACA 570
BSNT_04070___ 592 -AGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC 640
|| ||.||....||.|.||||.|.|||.|.||.|||||..||||.||.|
BL00636___rad 571 CAG-CGCCTTCACGAGTCCGGACAGCTGCTCGGAATCGAATTGCTCGATC 619
BSNT_04070___ 641 ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATAT 690
||.|..|.|||||.|||.|||||||||||||.|||||.||||||||||||
BL00636___rad 620 ATATCATCATCGGTGATCAAAAATTTGTGAGCTTAAAAGAAAAAGGATAT 669
BSNT_04070___ 691 TTGTAA 696
||||||
BL00636___rad 670 TTGTAA 675
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