Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04074 and BL00634
See
Amino acid alignment /
Visit
BSNT_04074 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:07
# Commandline: needle
# -asequence dna-align/BSNT_04074___spoIIB.1.5803.seq
# -bsequence dna-align/BL00634___spoIIB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04074___spoIIB-BL00634___spoIIB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04074___spoIIB-BL00634___spoIIB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04074___spoIIB
# 2: BL00634___spoIIB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1116
# Identity: 661/1116 (59.2%)
# Similarity: 661/1116 (59.2%)
# Gaps: 201/1116 (18.0%)
# Score: 1704.0
#
#
#=======================================
BSNT_04074___ 1 TTGAAAAAAAG--AAAG-AATAAAAA-------AAACAGTAAAGCCGCAG 40
.||||||||.| |||| ||.||||| ||| |||||..|.|
BL00634___spo 1 ATGAAAAAACGGAAAAGCAAGAAAAACTCAGCTAAA----AAAGCGCCCG 46
BSNT_04074___ 41 AAAAAG---CCCTCAAGGTGACGATTAATGGAAAAGAAGAGACGGTTTAC 87
||.||| |.||.||.||||.|||.||.||.|.|||||||||..|.|||
BL00634___spo 47 AACAAGACCCGCTTAAAGTGATGATCAACGGCAGAGAAGAGACTATCTAC 96
BSNT_04074___ 88 ------GAACAAGAG------ACGCCTGAGACAGAGGCGGATAAAAGCA- 124
|||.||||| | |||||...|.|.|||||.|
BL00634___spo 97 GGAAATGAAAAAGAGTTTTCCA--------ACAGAAATGAAGAAAAGAAG 138
BSNT_04074___ 125 -TGACATTTTCAAATTGGGAGGAAAAAAGACAGGCAGAACAAGAGGTTGC 173
|.||.|||||.||.|||||.|||||.|||.|||||||||..||..|..|
BL00634___spo 139 TTTACCTTTTCGAACTGGGAAGAAAAGAGAAAGGCAGAACGGGAAATATC 188
BSNT_04074___ 174 GGCATCCCA-------GGAACATCCTGATGAAGATGAATTCAATTGGGAT 216
|||.||..| ||.||| |.|||...||.||||||.|..|||...
BL00634___spo 189 GGCTTCAAAAGAGGACGGCACA-CATGAAACAGGTGAATTTACATGGACG 237
BSNT_04074___ 217 TCA------GAGGAAGACAAGGTGTTTAAAGAGGACCCAAAAGTTGTTCC 260
.|| ||.|||||.|..||.|..|||||.||.||.|||||.||..|
BL00634___spo 238 CCACCGGACGAAGAAGAAACCGTCTACAAAGACGATCCTAAAGTGGTGGC 287
BSNT_04074___ 261 TCCTTTTCAAAAGAA----------AAAAACAAAGCTTTATGCAAAAGGA 300
.||||.||||||||| |||||||| ..||||||.||
BL00634___spo 288 GCCTTATCAAAAGAAAAACGAGCCCAAAAACAA------CCGCAAAACGA 331
BSNT_04074___ 301 AAGACCGGGGC---TGCCAAACCGGTAAAAAGAGTGGCCGCGACGATTGC 347
|| || |.| |.|..|.||.||.||..||.|.||||||||.||.|.
BL00634___spo 332 AA-AC---GTCTCTTACGTATCCTGTGAAGCGATTTGCCGCGACCATCGT 377
BSNT_04074___ 348 CTTCGCGGCTGTCATTGGCACTGGATTAGGGCTATTCGCGTTAAACATAT 397
|||.||.|.|.|..|.||.||.|||.|.||.||.||.|||.|.| ||.|
BL00634___spo 378 CTTTGCTGTTTTGCTCGGGACGGGACTCGGTCTGTTTGCGCTGA--ATCT 425
BSNT_04074___ 398 CG--GGGAATAAAGAAGCGTCAGCACCGGCCTC---------TTTAGAGG 436
|| ..|.||||||||| .||..|||||.|| |...|.||
BL00634___spo 426 CGCAACGCATAAAGAAG---GAGTGCCGGCTTCCGGCAGTCTTGGGGCGG 472
BSNT_04074___ 437 ATTCTCTAGGCAGCCAAACGGCAAAAGCAGGGGATACTTCAACT------ 480
||.||..|..|.||||.||.|..|||||.||.| |||
BL00634___spo 473 ATGCTGAAAACGGCCAGACCGTTAAAGCCGGTG--------ACTCCGGTG 514
BSNT_04074___ 481 -----GATAAACAAACTTCAGGCACAGAAAAACA-AGCGGCGCAAACTGA 524
||.|||.|.| ||..|||||||.| ||||| .|||.|.|.
BL00634___spo 515 CCGAGGAGAAAAAGA------GCGGAGAAAAAAATAGCGG-ACAAGCGGG 557
BSNT_04074___ 525 AGGTACATATAAAACATACGCTGTACAAGCCGGAAAATTTTC----AAAT 570
||...|.|.|||.|..|.|||.||.||.||||||||.||||| |||
BL00634___spo 558 AGAATCTTTTAACAGCTTCGCCGTTCAGGCCGGAAAGTTTTCGTCTAAA- 606
BSNT_04074___ 571 GAAAAGGGTGCCGAAACGTTAACAGAACAATTGACCGAAAAAGGATATTC 620
||| ||.||.||.|||.|..|....|||.|..|.||.||.||.|||.|
BL00634___spo 607 GAA---GGAGCGGATACGCTGGCCTCTCAAATCGCAGACAAGGGGTATGC 653
BSNT_04074___ 621 CGCCGTGTC-ACTGTCAAAGGATGACGGGTATACGTATGTCATCGCGGGC 669
||||||||| |.|| |.|||||.|||||||.| |||||.|||||.||.
BL00634___spo 654 CGCCGTGTCGATTG-CCAAGGACGACGGGTTT---TATGTAATCGCCGGA 699
BSNT_04074___ 670 TTAGCCAGTGATAAG--GATGTCTCACA---GCAGTTAGGACAGGTTTTA 714
.||.|..|.||.||| |||| ||| |.|.|| ||..|..|.|||
BL00634___spo 700 ATAACGGGAGAAAAGCAGATG----ACATCTGAACTT-GGCAAAATATTA 744
BSNT_04074___ 715 ATCGACAGTGATTTTGAAGCCTGGGGAGGCAAGGAGCTTTCCTTATCAAT 764
|||||.|..|||||||||||.|||||.||.||.||||||.|..|..||||
BL00634___spo 745 ATCGAAAACGATTTTGAAGCGTGGGGCGGAAAAGAGCTTCCGGTTGCAAT 794
BSNT_04074___ 765 AGAGTCAGATATGACAGATTCTTTTAAGGAAACAGCGGAGCTTGCAGCAA 814
.|||||.|.|.||...||..|||||||.|||.|.||.|||||..|.||||
BL00634___spo 795 CGAGTCCGGTTTGCTGGAGCCTTTTAAAGAAGCGGCTGAGCTGTCGGCAA 844
BSNT_04074___ 815 AGGCGATTCTCGGCGAAGACATTACA----AAAGCGAGTGTAGAGAAAAT 860
|.|||||||||||||..||..||||| || ||.||
BL00634___spo 845 AAGCGATTCTCGGCGCGGAGGTTACATCTCAA-------------AACAT 881
BSNT_04074___ 861 AG-------AAAAGTCT---CTTGGTG------AAACAAAAGCGTCAGAA 894
|| .|||| || ||||..| ||.||||||..||.|||
BL00634___spo 882 AGCCGATGTCAAAG-CTCAACTTGACGGGGCCCAATCAAAAGGCTCTGAA 930
BSNT_04074___ 895 ACAGGAGAGAAAAAAGCG-ATTTTGCAGGCTTTAAAGGAATTAGAGGATC 943
|||..|||.|||.| ||..||.|.||..|.||.....|.|||.|.|
BL00634___spo 931 ----GAGGTAAAGAAGAGCATACTGGAAGCCGTCAACCTTCTGGAGAAAC 976
BSNT_04074___ 944 CAAGTGCTGAAGC---CGGGTGGAAGGCTCAG-CAGCAGCTGTTAGCCGT 989
|.| |.|.||| |||.|||||| || ||||||||.|| || |
BL00634___spo 977 CGA---CCGCAGCCAACGGCTGGAAG----AGCCAGCAGCTATT-GC--T 1016
BSNT_04074___ 990 CG------TAAAATAA 999
.| |.||||||
BL00634___spo 1017 GGGCCAAATTAAATAA 1032
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.