Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04077 and BL00633
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_04077.1.5803.seq
# -bsequence dna-align/BL00633___comC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04077-BL00633___comC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04077-BL00633___comC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04077
# 2: BL00633___comC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 836
# Identity: 329/836 (39.4%)
# Similarity: 329/836 (39.4%)
# Gaps: 385/836 (46.1%)
# Score: 662.5
#
#
#=======================================
BSNT_04077 0 -------------------------------------------------- 0
BL00633___com 1 ATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTT 50
BSNT_04077 0 -------------------------------------------------- 0
BL00633___com 51 TAATTCGGCCGGGCGCCGCATTCCTGAAAAGATATCATTGATTGCTCCGC 100
BSNT_04077 0 -------------------------------------------------- 0
BL00633___com 101 GTTCCCTCTGCCGCGTCTGCAAAAGGCAGCTGGGCTTCTCGGAGCTGATA 150
BSNT_04077 0 -------------------------------------------------- 0
BL00633___com 151 CCGGTTTTGTCCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAAC 200
BSNT_04077 1 -------------ATGTATCCCGCAGCAGAGCTTGT-----GACAGCGTG 32
.|||||||.||||..|||| |.| |.||.|.||
BL00633___com 201 CCCGCTCTCGATCGTGTATCCGGCAGTTGAGC-TCTCCGCCGCCATCCTG 249
BSNT_04077 33 TTT--ATTTGCCGCCGCAGGAATACGCTTTGGCA-----CGTCGCTGG-A 74
||| .||||||| |||.| .||| ||.|||| .|..||||| .
BL00633___com 250 TTTGCGTTTGCCG--GCATG--CACG-TTGGGCATGAGGGGGAGCTGGTG 294
BSNT_04077 75 ACTGTTTCCCGCTGTGGTGTT-TATCTCT-CTTCTCAT----TATTGT-- 116
|.||| ||| ||.|.|| ||||||| |||.|.|| | ||||
BL00633___com 295 ATTGT-----GCT-TGCTCTTATATCTCTGCTTTTGATCGTCT-TTGTAT 337
BSNT_04077 117 -TGCAGTGACAGATAT--TCATT--TTATGCTGATTCCAAATCGTATATT 161
||..||||||.|.|| ||||| ..|||||| ||| ||
BL00633___com 338 CTGATGTGACACACATGATCATTCCGGATGCTG-TTC-----------TT 375
BSNT_04077 162 GATTTTCTTTCTTCCCT-TTTTGGCGGCCGCGA-GATTGATTTCTCCGCT 209
|.||.||||.|.||| |.||.||.|.|| || ||||..||..|||.||
BL00633___com 376 --TGTTTTTTCCTGCCTGTCTTTGCCGTCG-GACGATTCCTTGTTCCTCT 422
BSNT_04077 210 TGATTCCTGGTATGCAGGCCTGTTAGGTGC---GGCAGCCGGATTTCTAT 256
.||....|||.|..||.|..||...||||| |||.|.||| ||
BL00633___com 423 GGAACAGTGGCACTCAAGTTTGAGCGGTGCGATGGCCGGCGG-----TA- 466
BSNT_04077 257 TTCTG-----------GCTGTAATTGCCGCAATCACCCATGGGGGAGTAG 295
|.||| ||||...|||.||.|| |||||..|.|
BL00633___com 467 TGCTGCCCCTCTTGACGCTGCTTTTGACGAAA--------GGGGGGATCG 508
BSNT_04077 296 GGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTG 345
|..|.|||||..|.||..|.||||||||.||.|||.|.|.|||
BL00633___com 509 GCTGGGGAGACGTAAAGCTGTTTGCGGTAATCGGCATGGCGCT------- 551
BSNT_04077 346 AAAATGCTGGCAGCTGCCTTTTTCTTTTCTGTTTT--------------- 380
.||||||.||||..|..||.||..||||
BL00633___com 552 -------CGGCAGCCGCCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCC 594
BSNT_04077 381 ----GATAGGTGC-----ATTATATGGAGC----GGCAGCCGTTCTGACT 417
||..||||| .|||| ||.| | |||||.|...||||
BL00633___com 595 GCAGGAACGGTGCTTGGTCTTAT-TGCA-CTCCTGGCAGGCAAACTGA-- 640
BSNT_04077 418 GGTAGACTCGCTAAAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGC 467
||| ||||.| |.||..|.||.|||||.|||||.||....||
BL00633___com 641 ---AGA------AAAATG-AACCAATGCCGTTTGCTCCCGCGATTCTGGC 680
BSNT_04077 468 AGGGA-GCATTTT----AGCCTATTTATACGGTGACTCTATCAT------ 506
.|||| || | || ||..||.||.||.||..|.||.||
BL00633___com 681 CGGGACGC----TGACGAG-CTGCTTCTATGGCGAACCAATGATCGAGTG 725
BSNT_04077 507 -----TTCTTTTTATATCAAAATGGCATTGGGCTGA 537
||| |||.|||||.|.|.|||
BL00633___com 726 GTACCTTC-----------AAACGGCATGGTGGTGA 750
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