Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04080 and BL00631
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_04080___valS.1.5803.seq
# -bsequence dna-align/BL00631___valS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04080___valS-BL00631___valS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04080___valS-BL00631___valS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04080___valS
# 2: BL00631___valS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2676
# Identity: 2122/2676 (79.3%)
# Similarity: 2122/2676 (79.3%)
# Gaps: 66/2676 ( 2.5%)
# Score: 8380.5
#
#
#=======================================
BSNT_04080___ 1 ATGGA-AACGAATGAACAAACAATGCCGACGAAATATGATCCGGCAGCGG 49
||||| ||..|| ||||..||.||||||||.|||||.||||||.|.||.|
BL00631___val 1 ATGGATAATCAA-GAACTGACGATGCCGACAAAATACGATCCGTCTGCAG 49
BSNT_04080___ 50 TTGAAAAAGACCGATATGATTTTTGGCTAAAAGGCAAATTTTTTGAAGCG 99
|||||||||||.||||.||.|.||||.|.||.|||||||||||.||||||
BL00631___val 50 TTGAAAAAGACAGATACGACTATTGGGTGAACGGCAAATTTTTCGAAGCG 99
BSNT_04080___ 100 GGCAGTGA-CCAGACAAAAGAGCCATACTCTGTTGTCATCCCGCCGCCAA 148
...|..|| ||.|| ||||||.||.|||.|.||||||||.||.|||||.|
BL00631___val 100 AAAAACGATCCTGA-AAAAGAACCGTACACCGTTGTCATTCCCCCGCCGA 148
BSNT_04080___ 149 ACGTAACAGG-AAGACTTCACCTTGGCCACGCATGGGACACAACGCTGCA 197
|.||.||.|| ||| ||.|||.|.||.||.||.|||||..|.||..||||
BL00631___val 149 ATGTGACGGGTAAG-CTGCACTTGGGGCATGCTTGGGATTCCACCTTGCA 197
BSNT_04080___ 198 AGACATTGTAACAAGAATGAAACGCATGCAGGGCTATGATGTGCTGTGGC 247
.||.||.||.||||||||||||||.||||||||||||||.|||||.||||
BL00631___val 198 GGATATCGTGACAAGAATGAAACGGATGCAGGGCTATGACGTGCTCTGGC 247
BSNT_04080___ 248 TTCCAGGCATGGACCATGCCGGCATCGCAACACAGGCTAAAGTGGAGGCG 297
|.||.||.||||||||.|||||.||.|||||.|||||.|||||.||.|||
BL00631___val 248 TGCCGGGTATGGACCACGCCGGTATTGCAACCCAGGCAAAAGTAGAAGCG 297
BSNT_04080___ 298 AAACTTCGTGAAGAAGGCAAATCCCGCTACGATTTAGGCCGTGAAAAATT 347
||.||||||||||||||.|||.|.|||||.|||.|.||.||.||||||||
BL00631___val 298 AAGCTTCGTGAAGAAGGAAAAACGCGCTATGATCTCGGACGCGAAAAATT 347
BSNT_04080___ 348 CCTCGAAGAAACGTGGAAGTGGAAGGAAGAATATGCTGACTTTATTCGCA 397
|||.||||||||.|||||.|||||.||.||||||||.||.||||||||||
BL00631___val 348 CCTTGAAGAAACATGGAATTGGAAAGAGGAATATGCCGATTTTATTCGCA 397
BSNT_04080___ 398 GCCAGTGGGCGAAATTAGGTCTTGGCCTAGATTATTCCCGTGAACGTTTT 447
||||||||||.||..|.|||||.|||||.||||||||..|.||.||.||.
BL00631___val 398 GCCAGTGGGCAAAGCTCGGTCTCGGCCTCGATTATTCTAGGGAGCGGTTC 447
BSNT_04080___ 448 ACGCTGGATGAAGGCTTGAGC-----AAAGCGGTAAGAGAAGTATTCGTT 492
||.||.|||||.|| || ||||||||..|.||||||||.||.
BL00631___val 448 ACCCTCGATGAGGG-----GCTTTCTAAAGCGGTGCGCGAAGTATTTGTA 492
BSNT_04080___ 493 AAGCTTTATGAAAAAGGCCTGATCTACAGAGGCGAATATATTATTAACTG 542
|||||||||||||||||.|||||.|||.|.||.||||||||.||||||||
BL00631___val 493 AAGCTTTATGAAAAAGGGCTGATTTACCGCGGAGAATATATCATTAACTG 542
BSNT_04080___ 543 GGACCCAGCGACAAAAACAGCCCTATCCGACATTGAGGTGATTTACAAGG 592
|||.||.||.||.|||||.||..|.||.|||||.||.||.||.||.||.|
BL00631___val 543 GGATCCGGCAACCAAAACGGCTTTGTCAGACATCGAAGTCATCTATAAAG 592
BSNT_04080___ 593 ATGTTCAAGGCGCGTTCTATCATATGAGCTATCCGCTTGCTGACGGTTCA 642
|.||.|||||.|||||||||||||||.|.||||||||....|||||||||
BL00631___val 593 ACGTACAAGGTGCGTTCTATCATATGCGATATCCGCTGAAAGACGGTTCA 642
BSNT_04080___ 643 GGCTCAATTGAAATTGCGACGACACGTCCTGAAACAATGCTCGGTGATAC 692
|||||.|||||||||||||||||.|||||.||||||||||||||.|||||
BL00631___val 643 GGCTCGATTGAAATTGCGACGACCCGTCCGGAAACAATGCTCGGCGATAC 692
BSNT_04080___ 693 AGCTGTTGCCGTTCACCCTGAAGACGAGCGCTATAAACACCTTATCGGAA 742
|||.|||||.||.||.||.|||||||||||.||.||||||||.|||||||
BL00631___val 693 AGCGGTTGCGGTGCATCCGGAAGACGAGCGGTACAAACACCTAATCGGAA 742
BSNT_04080___ 743 AAACGGTGATCCTGCCGATTGTAAATC-------GTGAAATTCCGATTGT 785
|||||||.||.|||||| ||| |.|||||.||||||||
BL00631___val 743 AAACGGTCATTCTGCCG-------ATCACGGGCAGAGAAATCCCGATTGT 785
BSNT_04080___ 786 CGGTGATGACTATGTTGATATGGAATTTGGTTCAGGTGCCGTGAAAATTA 835
|||.||.||||||||.|||||||||||.||||||||.|||||.|||||||
BL00631___val 786 CGGAGACGACTATGTCGATATGGAATTCGGTTCAGGCGCCGTCAAAATTA 835
BSNT_04080___ 836 CGCCTGCTCATGATCCGAACGACTTCGAGCTTGGCAACCGCCACAATTTA 885
|||||||.|||||||||||||||||.||..|.||.|||||||||||..|.
BL00631___val 836 CGCCTGCCCATGATCCGAACGACTTTGAAATCGGAAACCGCCACAACCTT 885
BSNT_04080___ 886 GAACGCATTCTTGTCATGAATGAAGATGGCACGATGAATGAAAATGCTCT 935
|||||||||||.||||||||||||||.||||||||||||||.|||||.||
BL00631___val 886 GAACGCATTCTCGTCATGAATGAAGACGGCACGATGAATGACAATGCCCT 935
BSNT_04080___ 936 GCAATATCAAGGCATGGATCGTTTTGAATGCCGCAAAAAGCTCGTGAAAG 985
.||||||.||||||||||.|||||||||||||||||..||.|||||||||
BL00631___val 936 TCAATATAAAGGCATGGACCGTTTTGAATGCCGCAAGCAGATCGTGAAAG 985
BSNT_04080___ 986 ATTTACAGGAGGCGGGAGTTCTCTTCAAGATCGAGGATCATATGCACTCT 1035
||.|.|||||.|.|||.||.||.||||||||.||.||.||||.|||.||.
BL00631___val 986 ATCTTCAGGAAGAGGGCGTGCTGTTCAAGATTGAAGAACATACGCATTCG 1035
BSNT_04080___ 1036 GTCGGCCATAGTGAACGAAGCGGGGCTGTTGTGGAGCCTTATCTTTCTAC 1085
||||||||.||.|||||||||||.||.||.||.|||||.|||.|.||.||
BL00631___val 1036 GTCGGCCACAGCGAACGAAGCGGAGCAGTCGTTGAGCCGTATTTGTCAAC 1085
BSNT_04080___ 1086 ACAATGGTTTGTGCGCATGCAGCCGCTTGCTGATGCAGCGATTGAGCTGC 1135
|||.|||||.||||..||||||||||||||.||.||.||.||.||..|||
BL00631___val 1086 ACAGTGGTTCGTGCAAATGCAGCCGCTTGCCGACGCCGCCATCGAATTGC 1135
BSNT_04080___ 1136 AAAAGAAAGAAGAAAAGGTCAACTTTGTGCCTGACCGTTTCGAAAAAACG 1185
||||.|..||||..||.||||||||.||.|||||||||||.|||||||||
BL00631___val 1136 AAAAAAGCGAAGGCAAAGTCAACTTCGTCCCTGACCGTTTTGAAAAAACG 1185
BSNT_04080___ 1186 TATTTACACTGGATGGAAAACATCCGCGACTGGTGTATCTCCCGTCAATT 1235
|||.|.||||||||||||||.||||||||||||||.||.|||||.||..|
BL00631___val 1186 TATCTGCACTGGATGGAAAATATCCGCGACTGGTGCATTTCCCGCCAGCT 1235
BSNT_04080___ 1236 GTGGTGGGGCCATCGTATTCCTGCCTGGTATCATAAAGAAACAGGCGAGC 1285
.||||||||||||||.|||||.||.|||||.|||||||||||.||.||..
BL00631___val 1236 CTGGTGGGGCCATCGGATTCCGGCATGGTACCATAAAGAAACCGGTGAAA 1285
BSNT_04080___ 1286 TATATGTCGGGCTTGAAGCGCCGGAAGA--CAGCGAAAATTGGGAACAGG 1333
|.||||||||..|||||||||||||||| || |||||.|||||.||||
BL00631___val 1286 TCTATGTCGGCGTTGAAGCGCCGGAAGATGCA--GAAAACTGGGAGCAGG 1333
BSNT_04080___ 1334 ATACAGACGTACTGGATACATGGTTCAGTTCTGCGCTATGGCCTTTCTCC 1383
|.|.||||||.||.|||||||||||||||||.||.||.|||||.||.||.
BL00631___val 1334 ACAAAGACGTTCTTGATACATGGTTCAGTTCCGCTCTTTGGCCGTTTTCA 1383
BSNT_04080___ 1384 ACAATGGGCTGGCCTGATGTAACG--GCTGAAGACTTTAAACGCTACTAT 1431
||.|||||||||||||| ||.|| |..|||||.||.||.|||||||||
BL00631___val 1384 ACGATGGGCTGGCCTGA--TATCGATGAGGAAGATTTCAAGCGCTACTAT 1431
BSNT_04080___ 1432 CCGACAGATGTTCTCGTGACAGGGTACGATATCATTTTCTTCTGGGTATC 1481
|||||..|.||.||.||.|||||.||||||||.|||||||||||||||||
BL00631___val 1432 CCGACGAACGTCCTTGTCACAGGCTACGATATTATTTTCTTCTGGGTATC 1481
BSNT_04080___ 1482 ACGCATGATTTTCCAAGGCATTGAATTTACAGGCGAGCGCCCGTTCAAAG 1531
..|.|||||.||||||||.||.||||||||.||.||.||.|||||.||||
BL00631___val 1482 GAGAATGATCTTCCAAGGTATCGAATTTACCGGAGAACGTCCGTTTAAAG 1531
BSNT_04080___ 1532 ATGTTTTAATCCACGGCTTAATCCGTGACGAGCAAGGCCGGAAAATGAGT 1581
||||.||.||||||||..|.|||||.|||||.||.|||||.||||||||.
BL00631___val 1532 ATGTCTTGATCCACGGGCTCATCCGCGACGACCAGGGCCGCAAAATGAGC 1581
BSNT_04080___ 1582 AAATCTCTTGGCAACGGTGTCGACCCGATGGATGTGATTGACAAGTACGG 1631
|||||.||.||.|||||.|||||.|||||||||||.||.|||||||||||
BL00631___val 1582 AAATCGCTCGGAAACGGCGTCGATCCGATGGATGTAATCGACAAGTACGG 1631
BSNT_04080___ 1632 AGCCGATTCTCTGCGTTATTTCCTTGCGACTGGAAGCTCTCCTGGCCAGG 1681
|||.|||||.|||||.||.||||||||.||.|||||||||||.||.||||
BL00631___val 1632 AGCGGATTCGCTGCGCTACTTCCTTGCAACAGGAAGCTCTCCGGGTCAGG 1681
BSNT_04080___ 1682 ATCTGCGCTTCAGCTATGAAAAAGTGGAATCGACCTGGAATTTTGCCAAT 1731
||.|.||||||||||.|||||||||.||.||.||.|||||||||||.||.
BL00631___val 1682 ATTTACGCTTCAGCTTTGAAAAAGTAGAGTCAACATGGAATTTTGCGAAC 1731
BSNT_04080___ 1732 AAAATTTGGAACGCCTCCCGTTTTGCATTAATGAATATGGATGGCATGAC 1781
||.|||||||||||.||..|.||.||..|.|||||.|||||.||||||||
BL00631___val 1732 AAGATTTGGAACGCATCAAGGTTCGCTCTGATGAACATGGACGGCATGAC 1781
BSNT_04080___ 1782 GTACGATGAGCTTGATCTGTCAGGCGAAAAATCAGTCGCTGACAAGTGGA 1831
.|||||.||||||||.||||||||.||||||||.||.||.||.|||||||
BL00631___val 1782 ATACGAAGAGCTTGACCTGTCAGGGGAAAAATCCGTTGCCGATAAGTGGA 1831
BSNT_04080___ 1832 TTTTAACGCGATTAAATGAAACGATCGAGCACGTGACCCAGCTTGCTGAT 1881
|||||||..|.||.|||||||||||.||...||||||.|||||.||.||
BL00631___val 1832 TTTTAACAAGGTTGAATGAAACGATTGAAACCGTGACACAGCTGGCCGA- 1880
BSNT_04080___ 1882 CGA-TATGAATTTGGTGAAGTAGGACGCCATTTATATAACTTTATTTGGG 1930
|.| ||.|||||.||.||.||.||.||||||.|.||.||.|||||.||||
BL00631___val 1881 CAAGTACGAATTCGGCGAGGTTGGCCGCCATCTCTACAATTTTATCTGGG 1930
BSNT_04080___ 1931 ACGATTTCTGTGATTGGTATATTGAAATGGCGAAGCTTCCGCTTTATGGG 1980
|.|||||||||||.|||||.||.||||||||.||.|||||||||||.||.
BL00631___val 1931 ATGATTTCTGTGACTGGTACATCGAAATGGCTAAACTTCCGCTTTACGGC 1980
BSNT_04080___ 1981 GAAGACGAAGCGGCTAAGAAAACTACCCGTTCCATCCTTGCTTACGTACT 2030
|||||.||||||||.|||||.||.|||||.|||||..|.||.||.||.||
BL00631___val 1981 GAAGATGAAGCGGCGAAGAAGACAACCCGCTCCATTTTAGCGTATGTGCT 2030
BSNT_04080___ 2031 TGATCAAACGATGCGTCTGCTCCATCCGTTTATGCCATTCTTAACGGAGG 2080
.||||||||||||||.||.||.||||||||||||||.|||.|.|||||.|
BL00631___val 2031 GGATCAAACGATGCGCCTCCTGCATCCGTTTATGCCGTTCCTGACGGAAG 2080
BSNT_04080___ 2081 AAATTTGGCAGCACCTTCCTCACCAAGGGGAATCGATTACAGTAAGTC-A 2129
|.|||||||||||.|||||||||.||||||||||.|||||||| .|.| |
BL00631___val 2081 AGATTTGGCAGCATCTTCCTCACGAAGGGGAATCCATTACAGT-CGCCAA 2129
BSNT_04080___ 2130 ATGGCCTGTAGTAGTGCCG-----GAGCATACCGATACTGAAGCGACAGC 2174
|||||||| || |||| ||..||||.||.||.||.||..|.||
BL00631___val 2130 ATGGCCTG----AG-GCCGTCAAAGAATATACGGACACCGAGGCCGCGGC 2174
BSNT_04080___ 2175 TGACATGAAGCTTCTTGTTGAGCTGATCCGTTCTGTGCGCAATATCCGCA 2224
.||.|||||||||||.|||||..|.|||||..|.||.||.||.|||||||
BL00631___val 2175 GGATATGAAGCTTCTCGTTGAAGTCATCCGCGCCGTACGGAACATCCGCA 2224
BSNT_04080___ 2225 GTGAAGTCAATACGCCAATGAGCAAGCAGGTTGAACTGTACATTAAAACA 2274
|.|||||.||.|||||..|.|||||||||.|||||||.||.||||||||.
BL00631___val 2225 GCGAAGTTAACACGCCGCTCAGCAAGCAGATTGAACTTTATATTAAAACG 2274
BSNT_04080___ 2275 AGCACAGAC-GAAATAGCAGCCCGCCTCGAGGCGAACCGTTCATATGTTG 2323
||||| |.| |||||.||.|..||.||.||.|..||||||||.||.||.|
BL00631___val 2275 AGCAC-GCCGGAAATCGCTGAACGACTTGAAGAAAACCGTTCGTACGTAG 2323
BSNT_04080___ 2324 AACGCTTTACGAATCCGAGCGTGCTTAAAATCGGCACCGATATTGAGGCT 2373
||||||||||||||||||||.|.|||.|.|||||.||.||||||.|.||.
BL00631___val 2324 AACGCTTTACGAATCCGAGCCTTCTTCAGATCGGAACGGATATTCAAGCG 2373
BSNT_04080___ 2374 GTTGATAAGGCGATGACGGCCGTTGTCTCAGGAGCAGAGGTTATTCTT-C 2422
||.|||||.||||||||.||.||.||.||.||.||.|||.|.| |||| |
BL00631___val 2374 GTCGATAAAGCGATGACCGCTGTCGTATCTGGCGCCGAGCTGA-TCTTGC 2422
BSNT_04080___ 2423 CGCTTGAAGGCTTAATCAATATTGATGAAGAAATTGCCCGTCTGCAAAAA 2472
||||.|||||..|.||.||.|||||.||||||||...|||.||.||||||
BL00631___val 2423 CGCTCGAAGGTCTGATTAACATTGACGAAGAAATCAGCCGCCTTCAAAAA 2472
BSNT_04080___ 2473 GAATTTGATAAACTGACAAAAGAAGTTGAGCGTGTCCAAAAGAAACTTGG 2522
|||.|.|||||.|||||.||.||||||||.||.||.||.||||||.|..|
BL00631___val 2473 GAACTCGATAAGCTGACGAAGGAAGTTGAACGGGTTCAGAAGAAATTAAG 2522
BSNT_04080___ 2523 AAATGAAGGATTTATGAAAAAAGCGCCTGCACACGTAATTGATGAAGAAC 2572
.|||||||||||||||||||||||.||||||||.||.|||||.|||||.|
BL00631___val 2523 CAATGAAGGATTTATGAAAAAAGCACCTGCACATGTCATTGAAGAAGAGC 2572
BSNT_04080___ 2573 GTGAAAAAGAAAAAGATTATATGGCGAAGCGTGACGCTGTTCAAAAACGA 2622
|.|..||||||...|||||||.||||||||||||.|||||..|||||.||
BL00631___val 2573 GGGCGAAAGAAGCCGATTATACGGCGAAGCGTGAAGCTGTAGAAAAAAGA 2622
BSNT_04080___ 2623 ATGGCTGAGCTGAAGGGTTAA----- 2643
||.||.||..|||| ||
BL00631___val 2623 ATCGCCGAATTGAA-----AAACTGA 2643
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