Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04085 and BL00629
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_04085___spoVID.1.5803.seq
# -bsequence dna-align/BL00629___spoVID.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04085___spoVID-BL00629___spoVID.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04085___spoVID-BL00629___spoVID.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04085___spoVID
# 2: BL00629___spoVID
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1833
# Identity: 1003/1833 (54.7%)
# Similarity: 1003/1833 (54.7%)
# Gaps: 570/1833 (31.1%)
# Score: 2749.5
#
#
#=======================================
BSNT_04085___ 1 TTGCCGCAAAATCATCGATTGCAATTTTCTGTAGAAGAATCGATCTGTTT 50
|||||||||||..||||.||||||||||||||||||||.||.||||||||
BL00629___spo 1 TTGCCGCAAAACAATCGTTTGCAATTTTCTGTAGAAGAGTCAATCTGTTT 50
BSNT_04085___ 51 CCAAAAAGGACAGGAAGTTTCTGAACTGCTTTCTATTTCATTAGATCCTG 100
.|||||||||||||||||.||.|||.|..|.||.||||||||.|||||||
BL00629___spo 51 TCAAAAAGGACAGGAAGTATCCGAATTATTATCGATTTCATTGGATCCTG 100
BSNT_04085___ 101 ATATTAGGGTTCAGGAAGTAAATGATTATGTATCAATCATAGGATCGCTT 150
|.||||..||||||||||||||||||||||||||.||...|||.||..|.
BL00629___spo 101 ACATTACCGTTCAGGAAGTAAATGATTATGTATCCATACGAGGGTCATTA 150
BSNT_04085___ 151 GAACTTACAGGTGAGTACAACATAGATCAAAACAAACATACCGAAGAGAT 200
||.||.|||||.||.||||||||||||||| |||...|||
BL00629___spo 151 GAGCTGACAGGCGAATACAACATAGATCAA---------ACCCGGGAG-- 189
BSNT_04085___ 201 TTATACA-----------GATAAG-CGATTTGTTGAACAAGTCAGAAA-- 236
|||.|| ||.||| ||||||||.|||.|.|| |||
BL00629___spo 190 -TATGCAGAGCTGCCTGCGACAAGCCGATTTGTAGAAGATGT---AAAGC 235
BSNT_04085___ 237 -GAGAGAGGATGGAAGTGCGGAACTGACTCACTGTTTTCCTGTGGATATT 285
||.||.|||.||.||.||.||.|||||.||.|||||.||.||||||||.
BL00629___spo 236 TGAAAGGGGACGGCAGCGCAGAGCTGACGCATTGTTTCCCAGTGGATATC 285
BSNT_04085___ 286 ACCATTCCGAAAAATAAAGTGAGCCATTTACAGGATGTCTTCGTCTTTAT 335
|||||.||||||.|.|||||.|..||||||.|.||.||.||.||.|||||
BL00629___spo 286 ACCATCCCGAAAGACAAAGTCAATCATTTAAACGACGTATTTGTTTTTAT 335
BSNT_04085___ 336 TGACGCATTTGACTATCAATTGACGGATTCGCGCATTTTAACAATTCAAG 385
||||||.||.||.|||||..||||.|||.||.|.||..|.||.|||||.|
BL00629___spo 336 TGACGCTTTCGATTATCAGCTGACAGATGCGAGGATGCTGACGATTCAGG 385
BSNT_04085___ 386 CTGATTTAGCGATCGAAGGGCTTTTGGACGATACGCAAGACAAAGAGCCG 435
|||||||.|||||.|||||.||.|||.|.| .||||.|
BL00629___spo 386 CTGATTTGGCGATTGAAGGCCTCTTGAATG-------------TGAGCGG 422
BSNT_04085___ 436 GAGATACCTTTATATGAAGCTCCTGCGGCATTCAGGGAGGAAGAGCTTTC 485
|||||| ||..|||||
BL00629___spo 423 --------------TGAAGC---------------GGGTGAAGA------ 437
BSNT_04085___ 486 AGAGCCGTCGGCACATA---GTGTAGTAGAAGAACCGG--GTGCATCATC 530
|||.||| .|||| || .|| ||| ||.|||| |
BL00629___spo 438 AGAACCG--CGCAC-TATGCCTG------------CGGCCGTCCATC--C 470
BSNT_04085___ 531 GGCAGAGGAAGCAGTTCTTCAGCATGAACC-GCCAGCCGA--ACCGCCAG 577
||.||||| |||..||||| |||..|.|| |||..||
BL00629___spo 471 GGAAGAGG------------AGCTCGAACCTGCCTACAGATCACCTTCA- 507
BSNT_04085___ 578 AACTTTTTATCTCGAA-AGCGGGCCTCCGTGAAGAACTGGAGACAGAAAA 626
||| ..|||| |.|.|| ||||| ||||.||||
BL00629___spo 508 AAC-------GACGAAGATCAGG-----GTGAA------GAGAAAGAA-- 537
BSNT_04085___ 627 AGCAGAATCTGAGCC-GCCTGAATCGGTTGCTTCAGAACCAGAGGCCAGA 675
.||.|||.|| ||.||| |||| ||..|
BL00629___spo 538 -----TATTTGATCCAGCTTGA-----------------CAGA--CCTTA 563
BSNT_04085___ 676 -GAAGATGTGAAAGAGGAAGAAGAGTCAGAAGAGCTTG----CTGTGCCG 720
||||| |.|.||.||||||.||.|.|||||.|.|| |.||| .|
BL00629___spo 564 CGAAGA---GCAGGACGAAGAACAGGCGGAAGAACATGATACCGGTG-AG 609
BSNT_04085___ 721 GAAACGGAGGTTC----------GTGCTGAATCGGAAACAGAAGAATCTG 760
||||| ||||| ||..|...|||||||| ||..|.|
BL00629___spo 610 GAAAC---GGTTCCGATTTACCAGTCGTTTCTCGGAAAC----GACACAG 652
BSNT_04085___ 761 AGCCAGAACCTGATCC-TTCAGAAATAGAGATTCAAGAGATCGTTAAAGC 809
|| |||.||.|.|| || || |||.||
BL00629___spo 653 AG---GAAGCTAAACCGTT------------TT----------TTACAG- 676
BSNT_04085___ 810 AAAAAAAGAAACGGCTGAGCCGGCAGCTGCAATAGCG---GATGTTCG-- 854
||.||..|.||||.|| |.|||| ||.|..||
BL00629___spo 677 -----------CGTCTTTGTCGGCGGC----AGAGCGTACGAAGCGCGAA 711
BSNT_04085___ 855 --------TGAAGAAGCAGACTCTCCAGCGGAGACTGAGCTTCGTGAACA 896
|.||.|||.||.||| ||.||||||
BL00629___spo 712 ATAGAAAATCAAAAAGAAGCCTC------------------TCTTGAACA 743
BSNT_04085___ 897 CGCCGGAGCAGAAGAATCGCCTGCTTTGGAAGCTGAACTTCATTCAGAGA 946
|||||| ||||||| |..|||||||| .|||||
BL00629___spo 744 -GCCGGA--AGAAGAA----------TATAAGCTGAA-------AAGAGA 773
BSNT_04085___ 947 CTGTGATTGCAGAGGAAA----AAGAGGAAAC--AACAGAGTCTCCTAAT 990
|||| ||||||||.| ||
BL00629___spo 774 --------------GAAAGTGGAAGAGGAACCGGAA-------------- 795
BSNT_04085___ 991 CATGAATATGCGCTGCGCCAAGAGGCTCAAAATGA-AGAAGCAGCTCAAT 1039
|||||||.|||| |||.|| ||||
BL00629___spo 796 ---GAATATGAGCTG--------------AAAAGAGAGAA---------- 818
BSNT_04085___ 1040 CGGATCAGGCTGATCCTGCGCTTTGCCAAGAAGAGGCGGAAGCGGATGAA 1089
|| || ||||| ||||.||||.|||
BL00629___spo 819 ------AG---------------TG----GAAGA---GGAACCGGAAGAA 840
BSNT_04085___ 1090 GCTTTGGAGAGTGTATCAGAGGCCGCTCTCTCCATAGAAGATAGCAGAGA 1139
|||.|| ||....|.|||||| |||.||..
BL00629___spo 841 -------------TATGAG--------CTGAAAAGAGAAGA-AGCGGAAG 868
BSNT_04085___ 1140 AACAGCTTCAGCTGTATATGTGGAGAATGACAAAGCCGATTTCCATTTCC 1189
||.|||...||||| |..||.||| || ||
BL00629___spo 869 AAGAGCCGGAGCTG-------------TCGCACAGC-----TC---TT-- 895
BSNT_04085___ 1190 ATCAAAAAACAAGCTCGGAGGAGGCATCTCAAGAAGAATTGCCTGAACCG 1239
|.|||.||| |.|||| |.||.| |||| |||||.
BL00629___spo 896 -------ATCAACCTC--ACGAGG-AACTGA--AAGA-------GAACCC 926
BSNT_04085___ 1240 G--CATACCGTACCTTCCTGC----CTGA------ACAAGAA-GA---GG 1273
| | |||.|| .|||||.| |||| ||.|||| || ||
BL00629___spo 927 GTTC-TACAGT--GTTCCTCCTCTTCTGAAGGAAGACCAGAATGACAGGG 973
BSNT_04085___ 1274 AG---GATTCTTTTTA--TT---------CAGCGCCTAAGCTGCTGGAGG 1309
|| ||..|||||.| || ||| .|||| ||.
BL00629___spo 974 AGCCTGAGGCTTTTGAGGTTGAGGTGACACAG----GAAGC------AGA 1013
BSNT_04085___ 1310 AG-----GAAGAACAAGAGGAAG-AGAGC-TTCGAAATTGAAGT-GAGAA 1351
|| ||.|||.||||||||| .|.|| |.|| ||||||.| ..|.|
BL00629___spo 1014 AGCGATTGATGAAGAAGAGGAAGCCGGGCATACG--ATTGAAATCCCGGA 1061
BSNT_04085___ 1352 AAACAC----CATCAGCTGA-AGAGCCTAAGGAAGAAACACCTTTTCAAT 1396
|.|..| |||.|||.|| .|||||..|.|||||||
BL00629___spo 1062 ATATTCGTTTCATGAGCAGACGGAGCCCGAAGAAGAAA------------ 1099
BSNT_04085___ 1397 CCTTTCAGCTGCCTGAATCTTCTGAGACTGAAAGGAAGGAAACGGATGCT 1446
|||| |||||.|.|||.|.||||||
BL00629___spo 1100 -----------------------GAGA-TGAAATGCAGGCAGCGGATG-- 1123
BSNT_04085___ 1447 GTTCCTAGGGTTGCTCCTGCTGCTGAAACGAAGGAA-CCTCAAACAAAGG 1495
||| ||||| ..|| |.||||||
BL00629___spo 1124 --------------------------AAC--AGGAAGTGTC-AGCAAAGG 1144
BSNT_04085___ 1496 AAAGTGATAATTCTCTTTATTTAACAAAACTCTTTACAA---AAGAAGCG 1542
|||..||.||..|.||.|||||.|||||.||.||||||| |.|.||.|
BL00629___spo 1145 AAAACGACAACGCACTCTATTTGACAAAGCTGTTTACAAAGCAGGGAGAG 1194
BSNT_04085___ 1543 GATGAGTTTTCGAGAATGAAAATTTGTATTGTGCAGCAGGAAGATACGAT 1592
||.||||||.|..||||||..||.||.||.||.|||||..|.||||||||
BL00629___spo 1195 GAGGAGTTTACTCGAATGAGGATGTGCATCGTTCAGCAAAATGATACGAT 1244
BSNT_04085___ 1593 CGAGCGTTTATGCGAACGGTATGAAATT-ACATCCCAGCAGCTGATCAGG 1641
.||.|.|.|.|||||.||.|||||.||| ||.| |||||||||.|||.||
BL00629___spo 1245 TGATCTTCTGTGCGAGCGCTATGATATTAACGT-CCAGCAGCTCATCCGG 1293
BSNT_04085___ 1642 ATGAATT--CTTTAGCCTTGGATGATGAATTAAAAGCAGGACAGATTCTC 1689
||||||| |||| ||.|.||.||.||||||||||..||||||||.||.
BL00629___spo 1294 ATGAATTCCCTTT--CCCTTGACGAGGAATTAAAAGAGGGACAGATCCTT 1341
BSNT_04085___ 1690 TATATTCCTCAATATAAAAATAGCCATGCGTAA 1722
|||||.||..|.|||.||||.||||||||.|||
BL00629___spo 1342 TATATACCGGATTATCAAAACAGCCATGCCTAA 1374
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