Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04098 and BL00621
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:10
# Commandline: needle
# -asequence dna-align/BSNT_04098___lonA.1.5803.seq
# -bsequence dna-align/BL00621___lonA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04098___lonA-BL00621___lonA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04098___lonA-BL00621___lonA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04098___lonA
# 2: BL00621___lonA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2352
# Identity: 1784/2352 (75.9%)
# Similarity: 1784/2352 (75.9%)
# Gaps: 54/2352 ( 2.3%)
# Score: 6666.0
#
#
#=======================================
BSNT_04098___ 1 ATGGCAGAAGAATTAAAACGCAGCATCCCGCTCCTCCCTTTAAGAGGTTT 50
||||||||.|||...|||||.|.|||||||||||||||||||||||||||
BL00621___lon 1 ATGGCAGATGAAACGAAACGAAACATCCCGCTCCTCCCTTTAAGAGGTTT 50
BSNT_04098___ 51 ATTAGTGTACCCGACGATGGTTTTGCATTTAGATGTAGGACGTGACAAGT 100
|.|.||.||.|||||||||||||||||..|.||.||.||.|||||.||||
BL00621___lon 51 ACTCGTCTATCCGACGATGGTTTTGCACCTTGACGTCGGGCGTGAAAAGT 100
BSNT_04098___ 101 CGGTTCAGGCTCTTGAACAGGCAATGATGCATGATCATATGATATTTTTA 150
||||||||||.|||||||||||.||||||.||||.||||||||.|||||.
BL00621___lon 101 CGGTTCAGGCACTTGAACAGGCGATGATGAATGACCATATGATCTTTTTG 150
BSNT_04098___ 151 GCCACTCAGCAGGATATTTCGATAGACGAACCTGGTGAAGACGAGATTTT 200
||.||.||..||||.||.||.|||||||||||.|.|||||||||||||||
BL00621___lon 151 GCAACGCAAAAGGACATATCCATAGACGAACCGGATGAAGACGAGATTTT 200
BSNT_04098___ 201 CACTGTCGGCACCTATACAAAAATTAAGCAAATGCTGAAGCTTCCGAACG 250
.||..||||.||||||||.|||||.|||||.|||||.|||||.|||||||
BL00621___lon 201 TACATTCGGAACCTATACGAAAATCAAGCAGATGCTCAAGCTGCCGAACG 250
BSNT_04098___ 251 GTACGATTCGTGTGTTGGTGGAGGGCCTCAAACGCGCCCAGATCGTCAAA 300
|.||.||.||.||.|||||||||||..|..|.|||||||..||..|..|.
BL00621___lon 251 GAACAATCCGCGTTTTGGTGGAGGGGTTGCAGCGCGCCCGCATTCTTGAG 300
BSNT_04098___ 301 TACAATGAACACGAGGATTACACGTCGGTCGACATTCAACTTATTCATGA 350
|||.||||....||.||.||.|||||.||..|.||..|.|..||..||||
BL00621___lon 301 TACCATGACTTAGATGAATATACGTCTGTAAAAATCGAGCGAATCGATGA 350
BSNT_04098___ 351 AGA---TGATTCAAAAGATACAGAAGACGAAGCATTGATGCGGACTTTGC 397
||| ||| |||||||...|||||.||||||.|.|||||.||.||||
BL00621___lon 351 AGAGACTGA---AAAAGATGTTGAAGATGAAGCACTCATGCGCACATTGC 397
BSNT_04098___ 398 TAGACCACTTTGATCAGTACATAAAAATTTCTAAAAAAATCTCGGCCGAA 447
|.||||||||.|||||.||||||||.|||||.||||||||.|||||.|||
BL00621___lon 398 TTGACCACTTCGATCAATACATAAAGATTTCGAAAAAAATATCGGCGGAA 447
BSNT_04098___ 448 ACGTACGCCGCGGTTACTGATATCGAAGAGCCGGGGAGAATGGCAGACAT 497
||.|..|||||.||.||.|||||.|||||||||||.||||||||.||.||
BL00621___lon 448 ACATTTGCCGCTGTGACAGATATTGAAGAGCCGGGAAGAATGGCCGATAT 497
BSNT_04098___ 498 CGTTGCTTCTCATCTGCCCCTTAAACTAAAGGATAAGCAGGATATTTTAG 547
.||.||.||.||.||.||.||.||.||.||.||.||||||||..|..|.|
BL00621___lon 498 TGTCGCCTCCCACCTCCCGCTCAAGCTGAAAGACAAGCAGGAAGTGCTGG 547
BSNT_04098___ 548 AAACGGCTGATGTCAAAGACAGGCTGAACAAGGTCATTGATTTTATTAAT 597
|||||...||||||||||.|||..|||||||.||.||.||..|.|||.|.
BL00621___lon 548 AAACGATCGATGTCAAAGCCAGATTGAACAAAGTAATCGACCTGATTCAC 597
BSNT_04098___ 598 AATGAAAAAGAAGTGCTGGAGATTGAGAAAAAAATCGGCCAGCGCGTCAA 647
||||||||||||||.||.||||||||.||.||.|||||.|||||||||||
BL00621___lon 598 AATGAAAAAGAAGTCCTTGAGATTGAAAAGAAGATCGGGCAGCGCGTCAA 647
BSNT_04098___ 648 ACGTTCGATGGAGCGTACGCAGAAGGAATACTACTTGCGAGAACAAATGA 697
.|||||.|||||..|.||.||.|||||.||.|||.||||.||.||.||||
BL00621___lon 648 GCGTTCAATGGAAAGAACACAAAAGGAGTATTACCTGCGCGAGCAGATGA 697
BSNT_04098___ 698 AGGCGATTCAAAAAGAGCTTGGCGATAAAGAAGGCAAAACTGGCGAAGTT 747
|.||.||.||||||||.|||||||||||||||||.|||||.||.||.||.
BL00621___lon 698 AAGCCATCCAAAAAGAACTTGGCGATAAAGAAGGAAAAACGGGTGAGGTC 747
BSNT_04098___ 748 CAGACGCTGACGGAAAAAATCGAAGAAGCAGGC----ATGCCTGATCATG 793
||.|.||||||.|||||||||| ||||||| ||||||||..|||
BL00621___lon 748 CAAAAGCTGACTGAAAAAATCG----AGCAGGCCGGAATGCCTGACAATG 793
BSNT_04098___ 794 TGAAGGAAACAGCGCTTAAAGAATTGAACAGATATGAAAAAATTCCGTCA 843
||||.|||||.|||||||||||..|||||.|.||.||||||||||||||.
BL00621___lon 794 TGAAAGAAACCGCGCTTAAAGAGCTGAACCGGTACGAAAAAATTCCGTCC 843
BSNT_04098___ 844 AGTTCTGCGGAAAGCTCCGTGATCCGCAACTATATCGACTGGCTGGTTGC 893
||.||.||.||||||||.||.||||||||.||||||||.|||||..||.|
BL00621___lon 844 AGCTCAGCTGAAAGCTCTGTCATCCGCAATTATATCGAATGGCTTATTTC 893
BSNT_04098___ 894 TCTTCCGTGGACGGATGAAACAGATGATAAGCTTGATTTGAAAG------ 937
|||.||.||||..||||.||||||.||.|.|||.||||| ||||
BL00621___lon 894 TCTCCCATGGAACGATGCAACAGAAGACAGGCTGGATTT-AAAGCTCGCC 942
BSNT_04098___ 938 AAGCAGGACGTCTCTTGGACGAAGAGCACCACGGGCTAGAAAAAGTAAAA 987
|..|| |..|||| ||.|||||.||||||||.||.||||||||.||.
BL00621___lon 943 AGTCA--AATTCTC---GATGAAGAACACCACGGCCTTGAAAAAGTGAAG 987
BSNT_04098___ 988 GAACGTATTTTAGAATATTTGGCTGTCCAGAAGCTGACCAAATCCCTGAA 1037
||.||..||.|.|||||||||||||||||||||||||||...||..|.||
BL00621___lon 988 GAGCGGGTTCTCGAATATTTGGCTGTCCAGAAGCTGACCCGCTCGTTAAA 1037
BSNT_04098___ 1038 AGGCCCGATTCTCTGTTTGGCAGGACCTCCAGGTGTCGGAAAAACGTCTT 1087
|||.|||||..|.||.|||||.||.|||||.|||||.||||||||.|||.
BL00621___lon 1038 AGGACCGATCTTATGCTTGGCCGGCCCTCCGGGTGTTGGAAAAACCTCTC 1087
BSNT_04098___ 1088 TAGCCAAATCAATTG-CAAAAAGCTTGGGACGCAAATTCGTCAGAATCTC 1136
|.||.|||||.||.| ||||..|| |.|||||||||||||||.|.||.||
BL00621___lon 1088 TGGCGAAATCGATCGCCAAATCGC-TCGGACGCAAATTCGTCCGCATTTC 1136
BSNT_04098___ 1137 ACTCGGAGGAGTACGGGACGAATCAGAGATACGCGGACACAGACGGACCT 1186
.||.||.||.||..||||.|||||.||.||.|||||.|||.|.||.||.|
BL00621___lon 1137 CCTTGGCGGCGTGAGGGATGAATCTGAAATCCGCGGTCACCGCCGCACAT 1186
BSNT_04098___ 1187 ATGTCGGAGCAATGCCTGGACGTATTATTCAAGGGATGAAAAAAGCGGGC 1236
||||.||.||.|||||.||.|||||.|||||.||||||||||||||.|||
BL00621___lon 1187 ATGTAGGCGCCATGCCGGGCCGTATCATTCAGGGGATGAAAAAAGCAGGC 1236
BSNT_04098___ 1237 AAGCTGAATCCGGTCTTCTTATTAGACGAAATTGACAAAATGTCATCTGA 1286
|||...|||||.||.|||.|.||.|||||.||||||||||||.|.||.||
BL00621___lon 1237 AAGAACAATCCCGTATTCCTTTTGGACGAGATTGACAAAATGGCGTCGGA 1286
BSNT_04098___ 1287 TTTTAGAGGAGACCCATCATCCGCTATGCTTGAAGTGCTTGATCCAGAGC 1336
|||.||.|||||.||..|.||.||.|||||.||||||||.|||||.||.|
BL00621___lon 1287 TTTCAGGGGAGATCCCGCTTCAGCGATGCTGGAAGTGCTCGATCCTGAAC 1336
BSNT_04098___ 1337 AAAACAGCAGCTTCAGTGATCACTATATTGAAGAAACCTTTGATTTATCC 1386
|||||...|..|||||.||.||.|||||||||||.||.|||||.|||||.
BL00621___lon 1337 AAAACCATACGTTCAGCGACCATTATATTGAAGAGACATTTGACTTATCA 1386
BSNT_04098___ 1387 AAAGTGCTGTTTATCGCAACGGCAAACAATTTGGCCACAATCCCGGGCCC 1436
||.||..|||||||||||||.||.|||||..|||||||||||||.|||||
BL00621___lon 1387 AAGGTTTTGTTTATCGCAACCGCGAACAACCTGGCCACAATCCCCGGCCC 1436
BSNT_04098___ 1437 GCTCAGAGACAGAATGGAAATTATTAATATCGCAGGCTACACAGAAATAG 1486
||||||||||.|.|||||.||.||.|..|||||.|||||.||.|||.|.|
BL00621___lon 1437 GCTCAGAGACCGCATGGAGATCATCACGATCGCCGGCTATACGGAAGTGG 1486
BSNT_04098___ 1487 AAAAACTTGAAATCGTAAAGGATCACTTGCTTCCAAAGCAAATCAAAGAA 1536
||||..|.||||||||.||.||.||..||||||||||.||..|.||||||
BL00621___lon 1487 AAAAGGTCGAAATCGTCAAAGACCATCTGCTTCCAAAACAGCTGAAAGAA 1536
BSNT_04098___ 1537 CACGGGCTGAAGAAAAGCAACCTGCAGCTGCGTGATCAGGCGATTCTTGA 1586
|||||..||||.|||..|||.|||||..|.||.||.|||||..|.||.||
BL00621___lon 1537 CACGGTTTGAAAAAATCCAATCTGCAAATACGGGAGCAGGCTGTCCTGGA 1586
BSNT_04098___ 1587 TATTATCCGCTACTATACGAGAGAAGCTGGTGTGAGAAGCCTTGAACGCC 1636
..|.||.|||||.||||||||.|||||.||.||.||||..||||||||||
BL00621___lon 1587 CGTCATTCGCTATTATACGAGGGAAGCCGGCGTCAGAAATCTTGAACGCC 1636
BSNT_04098___ 1637 AGCTTGCCGCGATTTGCCGTAAAGCTGCAAAAGC-CATTGTTGCTGAAGA 1685
|..|.||.|||||.|||.|.|||||.|| .|||| .||.||..|.|..||
BL00621___lon 1637 AAATCGCAGCGATATGCAGAAAAGCGGC-GAAGCTGATCGTATCAGGGGA 1685
BSNT_04098___ 1686 GCGAAAACGGATTACGGTTACTGAGAAGAACCTTCAAGACTTTATCGGAA 1735
..|||||.|.||||||||.||.||.||.||||||.||||||.|.|.||||
BL00621___lon 1686 AAGAAAAAGAATTACGGTCACAGACAAAAACCTTGAAGACTATTTAGGAA 1735
BSNT_04098___ 1736 AACGTATTTTCAGATATGGACAAGCTGAAACAGAGGATCAGGTTGGTGTA 1785
||.|.||.|||||.||.|||||.|||||....||.||||||.|.||.||.
BL00621___lon 1736 AAAGAATGTTCAGGTACGGACAGGCTGAGCTCGACGATCAGATCGGCGTT 1785
BSNT_04098___ 1786 GTGACAGGGCTTGCTTATACAACCGTTGGCGGAGATACGCTGTCGATTGA 1835
||.|||||.|||||.||.||.||.||.|||||.|||||||||||.||.||
BL00621___lon 1786 GTCACAGGTCTTGCCTACACGACGGTCGGCGGTGATACGCTGTCCATCGA 1835
BSNT_04098___ 1836 AGTATCGCTTTCTCCGGGGAAAGGGAAATTAATCCTGACAGGAAAGCTCG 1885
|||.||.|||||.||.||||||||.||..|.||..||||.||||||||||
BL00621___lon 1836 AGTGTCTCTTTCCCCCGGGAAAGGCAAGCTCATTTTGACCGGAAAGCTCG 1885
BSNT_04098___ 1886 GAGATGTTATGAGAGAGTCAGCTCAGGCTGCATTCAGCTATGTGCGATCC 1935
|.|||||.|||||||||||.||.|||||.||||||||||||||.||.||.
BL00621___lon 1886 GCGATGTCATGAGAGAGTCGGCGCAGGCCGCATTCAGCTATGTCCGTTCA 1935
BSNT_04098___ 1936 AAAACAGAAGAACTTGGCATTGAA-------CCTGACTTTCATGAGAAGT 1978
||..|.||||| .||||| |||||.|||||.||.||..
BL00621___lon 1936 AAGGCGGAAGA-------GTTGAACATCAGCCCTGATTTTCACGAAAAAC 1978
BSNT_04098___ 1979 ATGATATTCATATACATGTACCAGAGGGTGCGGTGCCAAAAGATGGTCCG 2028
|.||||||||.||.||.||.||.||.||.||.||.||.||.||.||.||.
BL00621___lon 1979 ACGATATTCACATTCACGTGCCGGAAGGAGCCGTTCCGAAGGACGGCCCA 2028
BSNT_04098___ 2029 TCAGCTGGTATTACGATGGCAACAGCGCTTGTTTCTGCTTTAACGGGACG 2078
||.||.||.||.||.|||||.||.||.|||||.||.||..|.|||||.||
BL00621___lon 2029 TCCGCGGGGATCACAATGGCGACGGCTCTTGTCTCGGCGCTGACGGGCCG 2078
BSNT_04098___ 2079 GGCGGTTTCGCGTGAAGTCGGCATGACTGGGGAAATCACGCTTCGCGGGC 2128
..|.||||||||..|.|||||||||||.||.|||||||||.|..|.||.|
BL00621___lon 2079 ACCTGTTTCGCGAAATGTCGGCATGACCGGCGAAATCACGTTAAGAGGCC 2128
BSNT_04098___ 2129 GCGTGCTGCCGATCGGCGGCTTAAAGGAAAAAGCGCTTGGCGCACATAGA 2178
||||.||.||||||||||||||.||||||||.|||||.||||||||..|.
BL00621___lon 2129 GCGTTCTTCCGATCGGCGGCTTGAAGGAAAAGGCGCTCGGCGCACACCGT 2178
BSNT_04098___ 2179 GCGGGATTAACGAC---CATTATTGCGCCTAAAGATAATGAAAAAGATAT 2225
||.||.||||.||| |||||| |||.|||||||||||||||||.||
BL00621___lon 2179 GCCGGCTTAAAGACTGTCATTAT---GCCGAAAGATAATGAAAAAGACAT 2225
BSNT_04098___ 2226 AGAGGATATTCCGGAAAGCGTCAGGGAGGGGCTGACATTTATATTGGCGT 2275
.|||||.|||||..|.|||||..||||.||..||||.|| .|||..|||
BL00621___lon 2226 TGAGGACATTCCAAACAGCGTGCGGGAAGGCTTGACCTT--CATTCCCGT 2273
BSNT_04098___ 2276 --CCCACTTAGACGAGGTTTTGGAACATGCCTTAGTAGGAGAGAAGAAAT 2323
|.|||.|.|||||.|||.|..|.|||||..||||||||||..||||||
BL00621___lon 2274 CGCTCACCTGGACGAAGTTCTAAAGCATGCGCTAGTAGGAGAAGAGAAAT 2323
BSNT_04098___ 2324 GA 2325
||
BL00621___lon 2324 GA 2325
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