Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04101 and BL00619
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:10
# Commandline: needle
# -asequence dna-align/BSNT_04101___clpX.1.5803.seq
# -bsequence dna-align/BL00619___clpX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04101___clpX-BL00619___clpX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04101___clpX-BL00619___clpX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04101___clpX
# 2: BL00619___clpX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1273
# Identity: 1028/1273 (80.8%)
# Similarity: 1028/1273 (80.8%)
# Gaps: 17/1273 ( 1.3%)
# Score: 4124.5
#
#
#=======================================
BSNT_04101___ 1 ATGTTTAAATTTAACGAGGAAAAAGGACAATTAAAATGCTCGTTCTGTGG 50
|||||||||||.||||||||||||||||||||.|||||||||||.||.||
BL00619___clp 1 ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTTTGCGG 50
BSNT_04101___ 51 AAAAACACAAGATCAGGTTCGTAAGCTTGTAGCTGGACCTGGTGTATATA 100
.|||||||||||||||||.||.||||||||.||.|||||.||.|||||||
BL00619___clp 51 TAAAACACAAGATCAGGTACGCAAGCTTGTCGCCGGACCAGGCGTATATA 100
BSNT_04101___ 101 TATGTGACGAATGTATCGAACTCTGCACTGAAATTGTAGAGGAAGAACTC 150
||||||||||.||.||||||||.|||||||||||||||||.||.||||||
BL00619___clp 101 TATGTGACGAGTGCATCGAACTTTGCACTGAAATTGTAGAAGAGGAACTC 150
BSNT_04101___ 151 GGAACAGAAGAAGAAGTAGAATTTAAAGACGTACCAAAGCCTCAGGAAAT 200
||..|.|||||||||||.||.||.|||||.||.||.|||||..|||||||
BL00619___clp 151 GGCTCTGAAGAAGAAGTGGAGTTCAAAGATGTTCCGAAGCCAAAGGAAAT 200
BSNT_04101___ 201 TCGCGAAATT-TTGAATGAATATGTCATCGGCCAAGATCAAGCGAAGAAA 249
.|||||.||| ||| |||||||.|||||||||||.||.||.||.||.|||
BL00619___clp 201 CCGCGAGATTCTTG-ATGAATACGTCATCGGCCAGGACCAGGCAAAAAAA 249
BSNT_04101___ 250 TCACTTGCTGTTGCTGTGTATAACCACTATAAGCGCATTAACTCCAACAG 299
||.|||||.||.||.||.||.||.||.||.|||||.||.||.||.|||||
BL00619___clp 250 TCCCTTGCCGTGGCCGTCTACAATCATTACAAGCGGATCAATTCGAACAG 299
BSNT_04101___ 300 CAAAGTTGATGATGTTGAGCTTTCAAAAAGTAATATTTCATTAATCGGCC 349
||||||.||.||.||.|||||.|||||||||||.|||||..|.|||||.|
BL00619___clp 300 CAAAGTCGACGACGTCGAGCTGTCAAAAAGTAACATTTCCATGATCGGAC 349
BSNT_04101___ 350 CTACGGGAAGCGGTAAAACCCTTCTGGCGCAAACATTGGCTCGCATTTTA 399
|.||.||||||||.|||||.|||||.||.|||||..|.||.|||||..|.
BL00619___clp 350 CGACTGGAAGCGGAAAAACGCTTCTTGCTCAAACGCTTGCCCGCATCCTG 399
BSNT_04101___ 400 AATGTGCCGTTTGCGATTGCGGACGCTACATCTTTGACTGAAGCTGGATA 449
|||||||||||.||.||||||||.||.||.||..|.||||||||.||.||
BL00619___clp 400 AATGTGCCGTTCGCCATTGCGGATGCCACGTCGCTTACTGAAGCAGGCTA 449
BSNT_04101___ 450 CGTGGGTGAAGATGTAGAGAATATTCT-CTTGAAGCTCATCCAAGCTGCT 498
.||.|||||||||||.|||||.|||.| ||| |||||.|||||.||.|||
BL00619___clp 450 TGTCGGTGAAGATGTGGAGAACATTTTGCTT-AAGCTGATCCAGGCAGCT 498
BSNT_04101___ 499 GATTATGATGTGGAAAAAGCCGAAAAAGGCATTATCTATATTGATGAAAT 548
||.||.|||||.||||||||.|||||||||||||||||.||.||||||||
BL00619___clp 499 GACTACGATGTTGAAAAAGCGGAAAAAGGCATTATCTACATCGATGAAAT 548
BSNT_04101___ 549 CGATAAAGTGGCTAGAAAATCTGAAAACCCGTCTATCACACGTGATGTGT 598
||||||||||||.|||||.||.||.|||||.||.||.|||||.|||||.|
BL00619___clp 549 CGATAAAGTGGCCAGAAAGTCCGAGAACCCTTCGATTACACGCGATGTAT 598
BSNT_04101___ 599 CAGGTGAGGGTGTACAGCAGGCATTGCTTAAAATTCTTGAGGGTACAGTG 648
||||.||.||.||.||||||||||||||||||||||||||.|||||.||.
BL00619___clp 599 CAGGCGAAGGCGTTCAGCAGGCATTGCTTAAAATTCTTGAAGGTACGGTT 648
BSNT_04101___ 649 GCAAGCGTACCGCCTCAAGGTGGACGTAAGCATCCTCATCAAGAATTCAT 698
||.|||||.||.||.|||||.|||.|.|||||||||||||||||.|||||
BL00619___clp 649 GCCAGCGTTCCTCCACAAGGCGGAAGAAAGCATCCTCATCAAGAGTTCAT 698
BSNT_04101___ 699 TCAAATTGACACAACAAATATTTTGTTCATTTGCGGCGGAGCTTTCGATG 748
.||||||||||||||.||.||..||||||||||||||||||||||.||.|
BL00619___clp 699 CCAAATTGACACAACCAACATCCTGTTCATTTGCGGCGGAGCTTTTGACG 748
BSNT_04101___ 749 GTATCGAACAAATCATCAAACGCCGTTTAGGCCAAAAAGTGATTGGATTC 798
|.|||||.||.||||||||.||||||.|.|||||.||.||.||.||.|||
BL00619___clp 749 GAATCGAGCAGATCATCAAGCGCCGTCTCGGCCAGAAGGTCATCGGCTTC 798
BSNT_04101___ 799 GGTGCCGACAATAAAGC-TGCTGATCTTGAGAAAGAAGATCTTCTTTCAA 847
||..|.||||| .|||| ||..||.|||||.|||||||..||||||||.|
BL00619___clp 799 GGCTCTGACAA-CAAGCATGAAGACCTTGAAAAAGAAGCGCTTCTTTCCA 847
BSNT_04101___ 848 AAGTGCTTCCAGAAGATTTGCTCCGTTTCGGGTTAATTCCTGAATTTATC 897
||||||||||.|||||.|||||.||.||||||.|.||.||||||||.|||
BL00619___clp 848 AAGTGCTTCCGGAAGACTTGCTTCGCTTCGGGCTGATCCCTGAATTCATC 897
BSNT_04101___ 898 GGACGTCTTCCGGTTATTGCAAGCCTTGAAAAGCTTGACGAAGAAGCATT 947
||.|||||.|||.|.||.|||||||||||...|||.||.|||.||||..|
BL00619___clp 898 GGCCGTCTCCCGATCATCGCAAGCCTTGAGCCGCTGGATGAAAAAGCGCT 947
BSNT_04101___ 948 GGTTGCGATCTTAACAAAACCGAAAAACGCTCTTGTTAAGCAATTCAAGA 997
|||||..||.||||||||||||||||||||.||||||||.||||..|..|
BL00619___clp 948 GGTTGAAATTTTAACAAAACCGAAAAACGCGCTTGTTAAACAATATAGAA 997
BSNT_04101___ 998 AAATGCTTGAGCTTGACAACGTTGAGCTTGAGTTTGAAGAAGAAGCGCTT 1047
||||||||||..|.||..|.||.|||||||.|||||||||.||||||||.
BL00619___clp 998 AAATGCTTGAATTGGATGATGTGGAGCTTGTGTTTGAAGACGAAGCGCTC 1047
BSNT_04101___ 1048 TCTGAAATTGCTAAAAAAGCAATTGAACGCAAGACTGGAGCACGCGGACT 1097
.|.|||||.||||||||||||||||||||.||.||.||||||||||||||
BL00619___clp 1048 ACAGAAATCGCTAAAAAAGCAATTGAACGTAAAACAGGAGCACGCGGACT 1097
BSNT_04101___ 1098 CCGTTCTATCATTGAAGGCATCATGCTTGATGTGATGTTTGAGCTGCCTT 1147
.|||||.||.||.|||||.||||||||.||.|||||||||||.|||||.|
BL00619___clp 1098 TCGTTCCATTATCGAAGGAATCATGCTCGACGTGATGTTTGATCTGCCGT 1147
BSNT_04101___ 1148 CTCGTGATGACATTGAAAAATGTGTAATCACCGGGGCAACTGTGACACAC 1197
||||.||.||.|||||||||||.||.|||||.||...|||.||.||..||
BL00619___clp 1148 CTCGCGAGGATATTGAAAAATGCGTGATCACAGGCAAAACCGTCACTGAC 1197
BSNT_04101___ 1198 GGAGAGCCTCCTCGCCTCTTATTA--AAAGACGGCACTGAGGT-----AA 1240
||.||.||.| |||.|||.|||| |||||||||||.|..|| ||
BL00619___clp 1198 GGCGAACCGC--CGCGTCTCATTATGAAAGACGGCACGGTCGTCAATAAA 1245
BSNT_04101___ 1241 GCCAAGATAAAACATCTGCATAA 1263
|.|| |.|||||.||.||||||
BL00619___clp 1246 GACA--AAAAAACTTCAGCATAA 1266
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