Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04108 and BL00612
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_04108___leuB.1.5803.seq
# -bsequence dna-align/BL00612___leuB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04108___leuB-BL00612___leuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04108___leuB-BL00612___leuB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04108___leuB
# 2: BL00612___leuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1150
# Identity: 837/1150 (72.8%)
# Similarity: 837/1150 (72.8%)
# Gaps: 89/1150 ( 7.7%)
# Score: 3014.0
#
#
#=======================================
BSNT_04108___ 1 TTGAAGAAACGTATTGCTCTATTGCCCGGAGACGGGATCGGCCCTGAAGT 50
|||||.|||||.||.||.||.||||||||.|||||.||.||.||.|||||
BL00612___leu 1 TTGAAAAAACGAATCGCACTTTTGCCCGGTGACGGAATTGGTCCCGAAGT 50
BSNT_04108___ 51 ATTAGAATCAGCGACAGACGTACTGAAAAGTGTTGCCGAACGCTTTAACC 100
|||.||..|.||....||.||.||||||||.|||||.||||..|.|.|.|
BL00612___leu 51 ATTGGACGCGGCTGTTGATGTGCTGAAAAGCGTTGCTGAACATTATCAGC 100
BSNT_04108___ 101 ATGAATTTGAATTTGAATATGGCCTGATTGGAGGGGCGGCTATTGATGAA 150
|||||||.|||||||||||.||||||||.||.||||||||.||||||||
BL00612___leu 101 ATGAATTCGAATTTGAATACGGCCTGATCGGCGGGGCGGCAATTGATGA- 149
BSNT_04108___ 151 CATCATAA--CCCCCTCCCGGAGGAAACCGTTGCTGCTTGTAAAAATGCA 198
..||..| .||.||.||.||||||||.||.||.||.||.|||..|||.
BL00612___leu 150 -GGCAGGAGCGCCGCTTCCTGAGGAAACTGTCGCCGCCTGCAAAGCTGCG 198
BSNT_04108___ 199 GACGCGATATTGCTTGGTGCTGTCGGCGGACCGAAATGGGATCAAAATCC 248
|||||.||.|||||.||.|||||.|||||.||||||||||||||||||||
BL00612___leu 199 GACGCCATTTTGCTCGGAGCTGTAGGCGGGCCGAAATGGGATCAAAATCC 248
BSNT_04108___ 249 TTCGGAACTGAGACCGGAAAAAGGGCTGCTCAGCATCAGAAAACAGCTTG 298
|||.||.|||.|.||.|||||||||||||||..||||.|.||.|||||.|
BL00612___leu 249 TTCTGAGCTGCGGCCTGAAAAAGGGCTGCTCGCCATCCGCAAGCAGCTCG 298
BSNT_04108___ 299 ATTTGTTTGCGAATTTACGGCCTGTGAAGGTATTTGAAAGCCTTTCTGAT 348
||.|.|||||.|||.|.||||||||.||.|||||||||||||||.|.|..
BL00612___leu 299 ATCTTTTTGCCAATCTGCGGCCTGTTAAAGTATTTGAAAGCCTTGCGGGA 348
BSNT_04108___ 349 GCTTCGCCTTTGAAAAAAGAATATATAGATAATGTTGATTTCGTTATCGT 398
|||||.||.||.||||..||||||||.||...||||||.||.||.|||||
BL00612___leu 349 GCTTCTCCGTTAAAAACCGAATATATCGAAGGTGTTGACTTTGTCATCGT 398
BSNT_04108___ 399 TCGTGAACTCACAGGCGGCTTGTATTTCGGCCAGCCGAGCAAACGCTATG 448
|||.||.||.||.||||||||||||||.||..||||||||.|.|..||.|
BL00612___leu 399 TCGCGAGCTGACGGGCGGCTTGTATTTTGGAAAGCCGAGCGAGCAGTACG 448
BSNT_04108___ 449 T-AAACACTGAA-GGTGAGCAGGAAGCAGTAGATACACTGTTTTATAAGC 496
| ||.|| ||| ||.|||.|.|||||.||.||.||.|||||||||||
BL00612___leu 449 TCAATCA--GAACGGCGAGGAAGAAGCGGTTGACACGCTGTTTTATAA-- 494
BSNT_04108___ 497 GAA---CGGAAATTGAACGAGTGATCAGAGAGGGCTTCAAAATGGCGGCA 543
|| |||||||.|||.|.||.|||||.||.|.||||.||||||| |||
BL00612___leu 495 -AAAGTCGGAAATGGAAAGGGTCATCAGGGAAGCCTTCCAAATGGC-GCA 542
BSNT_04108___ 544 GCCA---GAAAAGGCAAAGTGACCTCTGTAGATAAAGCGAATGTTCTTGA 590
| | |||||||||||||||||||.||.||||||||.||.||.|||||
BL00612___leu 543 G--AGTCGAAAAGGCAAAGTGACCTCCGTTGATAAAGCCAACGTCCTTGA 590
BSNT_04108___ 591 ATCAAGCCGGCTGTGGCGTGAAG-TGGCTGAGGACGTTGCGAAAGAATTT 639
.||||||...||.||||| .||| .|||.||.||.||.||||||||.|||
BL00612___leu 591 GTCAAGCAAACTATGGCG-CAAGACGGCGGAAGAAGTGGCGAAAGAGTTT 639
BSNT_04108___ 640 CCTGATGTGAAGCTTGAGCACATGCTTGTGGATAACGCGGCCATGCAGCT 689
|||||.||.|||||||||||||||||.||.||.||.||.|||||||||||
BL00612___leu 640 CCTGACGTCAAGCTTGAGCACATGCTCGTCGACAATGCAGCCATGCAGCT 689
BSNT_04108___ 690 AATCTATGCACC--GAATCAATTTGATGTCGTTGTGACTGAAAATATGTT 737
.||||||||.|| || ||.||||||.|..|.|||||.|||||.|||||
BL00612___leu 690 CATCTATGCGCCTGGA--CAGTTTGATATTATCGTGACAGAAAACATGTT 737
BSNT_04108___ 738 CGGTGATATTTTAAGCGATGAAGCGTCCATGCTTACAGGCTCGCTCGGAA 787
|||.||||||||||||||||||||.||.|||||.||.||.||||||||.|
BL00612___leu 738 CGGCGATATTTTAAGCGATGAAGCATCGATGCTGACCGGATCGCTCGGCA 787
BSNT_04108___ 788 TGCTCCCGTCAGCCAGCCTATCAAGCTCTGGTCTTCATCTGTTTGAACCT 837
||||.|||||.||||||.|||||||||||||.||||||.|.|..||||||
BL00612___leu 788 TGCTGCCGTCGGCCAGCTTATCAAGCTCTGGACTTCATTTATACGAACCT 837
BSNT_04108___ 838 GTTCATGGCTCCGCGCCTGATATTGCCGGTAAAGGGG--------TGGCA 879
||.||.|||||.||.||||||||.|| ||| |.||.
BL00612___leu 838 GTGCACGGCTCGGCTCCTGATATCGC--------GGGACAGAACATTGCC 879
BSNT_04108___ 880 AATCCGTTCGCAGCCATATTGTCAGCGGCAATGCTTTTGAGAACATCTTT 929
||||||.|.||.||.||.|||||.|||||.|||.|..|.||.||.||.||
BL00612___leu 880 AATCCGCTTGCGGCGATCTTGTCCGCGGCTATGATGCTCAGGACGTCATT 929
BSNT_04108___ 930 CGGGCTTGAAGAGGAAGCGAAAGCTGTAGAAGATGCGGTAAACAAAGTCT 979
|||.|||||||..||||||.|||||||.|||.||||.||..|..|||
BL00612___leu 930 CGGTCTTGAAGCTGAAGCGCAAGCTGTTGAACATGCAGTCGATCAAG--- 976
BSNT_04108___ 980 TGGCTTCT-------GGGAAAAGAACAAAAGATTTGGCA-------CGGG 1015
|||| ||.|||.|.||.||.||..||||| ||
BL00612___leu 977 ----TTCTCCGGGCAGGAAAACGGACGAAGGACCTGGCAAAAGGCTCG-- 1020
BSNT_04108___ 1016 GTGAAGAGTTCAGCAGCACTCAGGCCATTACAGAGGAAGTTAAGGCAGCA 1065
|||.|.| |||..|||||..|.|||||||.||||||.||.||.||.
BL00612___leu 1021 --GAACATT---GCACAACTCAATCGATTACAGGGGAAGTAAAAGCCGCG 1065
BSNT_04108___ 1066 AT--CATGAGTGAAAATACAATTTCTAATGT-GTGA-------------- 1098
.| || || .||.|||.|.|||||.||..| .|||
BL00612___leu 1066 CTGGCA-GA-CGACAATGCCATTTCAAACATCATGACCGCTTACGTTTAA 1113
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