Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04111 and BL00609

See Amino acid alignment / Visit BSNT_04111 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence dna-align/BSNT_04111___ilvH.1.5803.seq
#    -bsequence dna-align/BL00609___ilvH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04111___ilvH-BL00609___ilvH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04111___ilvH-BL00609___ilvH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04111___ilvH
# 2: BL00609___ilvH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 527
# Identity:     411/527 (78.0%)
# Similarity:   411/527 (78.0%)
# Gaps:          10/527 ( 1.9%)
# Score: 1601.0
# 
#
#=======================================

BSNT_04111___      1 TTGAAAAGAATTATCACATTGACTGTGGTGAACCGCTCCGGGGTGTTAAA     50
                     |||||||||||.|||||..||||.||..||||||....|||.||.|||||
BL00609___ilv      1 TTGAAAAGAATCATCACGCTGACGGTTTTGAACCAAAGCGGCGTCTTAAA     50

BSNT_04111___     51 CCGGATCACCGGTCTATTCACAAAAAGGCATTACAACATTGAAAGCATTA    100
                     |.|.|||||.||..|.||.||||||.||||||||||||||||||||||||
BL00609___ilv     51 CAGAATCACAGGGTTGTTTACAAAACGGCATTACAACATTGAAAGCATTA    100

BSNT_04111___    101 CAGTTGGACACACAGAAACAGCCGGCGTTTCCAGAATCACCTTCGTCGTT    150
                     |.||.||.|||||.|||||.||.||..|||||||||||||.||.||.|||
BL00609___ilv    101 CGGTCGGCCACACCGAAACCGCGGGAATTTCCAGAATCACGTTTGTTGTT    150

BSNT_04111___    151 CATGTTGAAGGAGAAAATGATGTTGAACAGTTAACGAAACAGCTCAACAA    200
                     |||||.|.||..|||||.||....||||||.|.||.|||||..|.|||||
BL00609___ilv    151 CATGTGGCAGATGAAAAAGAAACGGAACAGCTGACAAAACAATTAAACAA    200

BSNT_04111___    201 ACAGATTGATGTACTGAAAGTCACAGACATCACAAATCAATCGATTGTCC    250
                     .|||||||||||||||||||||||.|||||.||.|||||||||||.||||
BL00609___ilv    201 GCAGATTGATGTACTGAAAGTCACGGACATTACGAATCAATCGATCGTCC    250

BSNT_04111___    251 AGAGGGAGCTGGCCTTAATCAAGGTTGTCTCCGCACCTTCAACGAGAACA    300
                     |.||.||||||||.|||||||.|||.||.|||.|.||.||.|..||.||.
BL00609___ilv    251 AAAGAGAGCTGGCGTTAATCAGGGTGGTTTCCCCTCCGTCGAGCAGGACG    300

BSNT_04111___    301 GAGATTAATGGAATCATAGAACCGTTTAGAGCCTCTGTCGTTGATGTCAG    350
                     ||.||.||.||..||||.|||||||||.|.||.||||||||.|||||| |
BL00609___ilv    301 GAAATAAACGGCGTCATCGAACCGTTTCGGGCGTCTGTCGTCGATGTC-G    349

BSNT_04111___    351 C-AGAGACAGCATCGTTGTTCAGGTGACAGGCGAATCTAACAAAATTGAA    399
                     | |.|||||||.||||..||||.||||||||.|||||.|.|||.||.|||
BL00609___ilv    350 CAAAAGACAGCGTCGTGATTCAAGTGACAGGGGAATCGAGCAAGATCGAA    399

BSNT_04111___    400 GCGCTTATTGAATTGTTGAAACCTTATGGCATTAAAGAAATCGCGAGAAC    449
                     ||.||.||.|||.|.||||||||.||.||.||||||||..|.||.|||||
BL00609___ilv    400 GCCCTGATCGAACTATTGAAACCATACGGGATTAAAGAGGTAGCCAGAAC    449

BSNT_04111___    450 AGGTA-CACGGCTTTTGCGAGGGGTACCCAGCAAAAGGCGTCATCCAATA    498
                     |||.| ||||||.|||||||||||.||.|||||||||.||.|.||.|.||
BL00609___ilv    450 AGGCACCACGGCCTTTGCGAGGGGAACTCAGCAAAAGCCGGCCTCTATTA    499

BSNT_04111___    499 AAACAATATCTATTGTATAAAACATAA    525
                     ||||||||||||||||||||       
BL00609___ilv    500 AAACAATATCTATTGTATAA-------    519


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