Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01135 and BL00590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_01135___yerH.1.5803.seq
# -bsequence dna-align/BL00590___yerH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01135___yerH-BL00590___yerH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01135___yerH-BL00590___yerH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01135___yerH
# 2: BL00590___yerH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1222
# Identity: 876/1222 (71.7%)
# Similarity: 876/1222 (71.7%)
# Gaps: 62/1222 ( 5.1%)
# Score: 2996.0
#
#
#=======================================
BSNT_01135___ 1 TTGAAAAAGACGTTGGCATTGGCGGCAACGGCGGCAGTAT--TAATGCTG 48
||||||||||..||....||||||||..|.|||| |||| |.|||||.
BL00590___yer 1 TTGAAAAAGATATTATGTTTGGCGGCTGCTGCGG--GTATGCTCATGCTC 48
BSNT_01135___ 49 TCTGCCTGCTCGTCAGGTTTTGGGGGGGAGAAG--GAGGAAGAGATTACG 96
||.|||||..||.|...|||| |||||||||| |||.|.|||||...|
BL00590___yer 49 TCAGCCTGTGCGCCGAATTTT--GGGGGAGAAGAAGAGCAGGAGATGGTG 96
BSNT_01135___ 97 CAAAAGACGGCGAAATCGTCAGAAAAAGCGATTGTCCCGAAATATAATAT 146
||.||.||||..||.|||..|||||||||.||..|.||||||||.||.||
BL00590___yer 97 CAGAAAACGGATAAGTCGAAAGAAAAAGCCATCATTCCGAAATACAACAT 146
BSNT_01135___ 147 CTCTGACTCCTATTACAAAATGGTGCTGCCGTTTAAGGCAGGCAAAGCGC 196
|||.||.||.|||||.||||||||.||.||.||.|||||.||.|||||.|
BL00590___yer 147 CTCCGATTCTTATTATAAAATGGTTCTTCCTTTCAAGGCGGGGAAAGCCC 196
BSNT_01135___ 197 GCGGCTTAACAACGGAACAGCTGAATACTAGGCTGGACATTGACGAGTTT 246
|||||||.||.||.||||..||||||||..|||||||.||.||.||.|||
BL00590___yer 197 GCGGCTTGACGACCGAACGCCTGAATACGCGGCTGGATATCGATGAATTT 246
BSNT_01135___ 247 GAAACAGGGCTGATGCGTCTTGCCCAAGATTCTTTCTCGACTGACGATTA 296
||.|||||..|||||||.|||||.||||||||.||.||.|||||||||||
BL00590___yer 247 GAGACAGGCATGATGCGCCTTGCGCAAGATTCATTTTCTACTGACGATTA 296
BSNT_01135___ 297 TCTGTTCCAAGAAGGACAATATTTAGATGAGGATACAGTATTAAGCTGGC 346
.||.||.||||||||||||||..|.|||||||||||.||||..|||||||
BL00590___yer 297 CCTTTTTCAAGAAGGACAATACCTGGATGAGGATACGGTATCGAGCTGGC 346
BSNT_01135___ 347 TGGCACGGAAAAAAACGGGCTCTGATTTGAAAAAAGCCGAAAAAGAAGAT 396
|.||.||.|||||||||||....||.|||||||||||.||.|||||.|||
BL00590___yer 347 TCGCCCGCAAAAAAACGGGGGACGACTTGAAAAAAGCGGAGAAAGACGAT 396
BSNT_01135___ 397 AAAAACTTCAAAAATGAAGGCTTGAACCCGGCGC--TCCCG-AGCTCTGG 443
||||||||||||||....||..||||||||||.| |||.| ||| ||
BL00590___yer 397 AAAAACTTCAAAAACCTCGGACTGAACCCGGCCCTTTCCGGAAGC---GG 443
BSNT_01135___ 444 TTCAAC--AGAAGAAAAGAACGAAAGCAGCCCGATTTATTTAGCATCC-- 489
.||||| |||||.|| ||||||...||||||||.||..|.|| ||
BL00590___yer 444 ATCAACAGAGAAGCAA--AACGAAGAAAGCCCGATATACCTCGC--CCAT 489
BSNT_01135___ 490 ATGCTTGAGCATGATTATTTAGTCAGAAAAGATAAGAATTCTATCCAGCT 539
|||||||||||.||.||..|.|||.|.|||||.|||.||.|.||..||||
BL00590___yer 490 ATGCTTGAGCACGACTACCTCGTCCGCAAAGACAAGGATACGATTGAGCT 539
BSNT_01135___ 540 TGGCGGCGTCATGATCGGACTGGCGTTAAACTCCGTGTATTACTATCGTG 589
.||.||||||.|||||||.||.|||.|.|||||.||..|.|||||.||.|
BL00590___yer 540 CGGAGGCGTCGTGATCGGCCTTGCGCTGAACTCTGTCCACTACTACCGCG 589
BSNT_01135___ 590 AAAAAACTGGCGACCCGCAAAAAGAAGTGGAGATTAAGGACAGCACGCTC 639
||||....|||||||||||||||||||||...||.|..||||..|.|||.
BL00590___yer 590 AAAATGTCGGCGACCCGCAAAAAGAAGTGACCATCAGCGACAAAAAGCTG 639
BSNT_01135___ 640 CGCCAGCAGGGAGAAAAAATTGCACAGGAGGTTATTAACCGCCTCCGCAA 689
.|.|||.|.||.||||||||.||..|.||.||....||.||..||.|.||
BL00590___yer 640 AGGCAGGAAGGCGAAAAAATCGCTGAAGAAGTGGCGAAACGGATCAGAAA 689
BSNT_01135___ 690 AAAAGATAACTTGAAGAATGTGCCGATTACCGTCGCGCTCTACAAGCAGG 739
.|..|||.|..|.||.|||.|.|||.|.||..||..|||.||||||||||
BL00590___yer 690 CATGGATGATCTAAAAAATATTCCGCTGACGATCATGCTTTACAAGCAGG 739
BSNT_01135___ 740 CGTCAAAAACATCGATTGTGCCGGGGAACTTCATCGCCAAAACAGAGGTC 789
||.|.||..|||||||.||.||.||.|||||.|||||||||||.||.||.
BL00590___yer 740 CGCCTAAGTCATCGATCGTCCCTGGAAACTTTATCGCCAAAACCGATGTG 789
BSNT_01135___ 790 AAAGCAGGCTCTACTGATATC----TCAAATTGGGATGACATCAATGAAA 835
||||||||..|.|..||.||| .| ||||||.|.|||||||||.
BL00590___yer 790 AAAGCAGGGACAAGCGAGATCGGCGGC----TGGGATAAAATCAATGAAG 835
BSNT_01135___ 836 AATATGTA----TTCTATCCGGCAGATACAACCACAG---CAGAAAAATA 878
| ||| ||||..|| |.||||...|| |.||.||..|
BL00590___yer 836 A----GTACACGTTCTTCCC------TTCAACAGAAGGTTCGGAGAAGCA 875
BSNT_01135___ 879 CCCGGATGACACCGAGGTCTTTAAGCGGTTCAAAAAC----TCAATTGAA 924
.|||||||||.|.|||.||||.||.||.||.|||||| ||.|| |.
BL00590___yer 876 TCCGGATGACGCGGAGCTCTTCAAACGCTTTAAAAACAAAGTCGAT--AC 923
BSNT_01135___ 925 GAATATTTCCCGAACTATACAGGCGTTGTCGGTACAGCGCTGTATGAAAA 974
| |||||.||.|||||.|||||.||||||||.||.||.||.|||.||.|
BL00590___yer 924 G--TATTTTCCAAACTACACAGGGGTTGTCGGCACGGCTCTCTATAAAGA 971
BSNT_01135___ 975 TGATGAAATGAAGAAAATGAAGATTGACATACCAATGCAATTCTATGGAA 1024
.||..|||||.||.|.|||||.||..||||.||.|||||.||.||.||.|
BL00590___yer 972 CGACCAAATGCAGGACATGAAAATCAACATCCCGATGCAGTTTTACGGCA 1021
BSNT_01135___ 1025 AAAGTGAAGTTGTCGCGTTTACCCAGTTCTTAACGGGTGAAGTGATGGAC 1074
||||.|||||..||||.||||||||||||||.||.|||||||||||||||
BL00590___yer 1022 AAAGCGAAGTCATCGCCTTTACCCAGTTCTTGACCGGTGAAGTGATGGAC 1071
BSNT_01135___ 1075 TACTACTCTAAAGGCTCAGTTGATGTCGAAGTCAATATCACGTCCTCAGA 1124
||||||...|||.||..|.|..|.||.||..||||.||.|..||.||||.
BL00590___yer 1072 TACTACGGCAAAAGCGGACTGAACGTTGAGATCAACATTAATTCGTCAGC 1121
BSNT_01135___ 1125 CGGACAGGAAGCGGTTATTATCCG-CAATGCC-GGAGATAAAGAGCCGAC 1172
|||.||||||||.||.|| ||.| .||.||| |||||.|||||.|||||
BL00590___yer 1122 CGGGCAGGAAGCCGTCAT--TCTGAAAAAGCCGGGAGACAAAGAACCGAC 1169
BSNT_01135___ 1173 TGTTCACATTTATGACTGA--- 1191
.||.||.||||||||.|.|
BL00590___yer 1170 CGTCCATATTTATGATTCATAA 1191
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