Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01132 and BL00588
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_01132___pcrA.1.5803.seq
# -bsequence dna-align/BL00588___pcrA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01132___pcrA-BL00588___pcrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01132___pcrA-BL00588___pcrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01132___pcrA
# 2: BL00588___pcrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2239
# Identity: 1751/2239 (78.2%)
# Similarity: 1751/2239 (78.2%)
# Gaps: 38/2239 ( 1.7%)
# Score: 6755.5
#
#
#=======================================
BSNT_01132___ 1 TTGAATTATATTAGCAATCAATTACTAAGCGGTTTAAACCCCGTTCAGCA 50
||||||||.||||||.|.||||||.|||||||.||.|||....|.|||||
BL00588___pcr 1 TTGAATTACATTAGCGACCAATTATTAAGCGGATTGAACAAGATGCAGCA 50
BSNT_01132___ 51 GGAAGCAGTCAAAACAACGGACGGGCCTCTTTTGCTGATGGCGGGAGCGG 100
||||||.||||||||.||||||||.||.||||||.|.|||||.|||||.|
BL00588___pcr 51 GGAAGCGGTCAAAACGACGGACGGTCCGCTTTTGATCATGGCAGGAGCAG 100
BSNT_01132___ 101 GAAGCGGAAAGACGCGTGTCCTGACACACAGAATTGCTTATTTAATGGCA 150
||||||||||||||||.||..||||.|||.|.|||||.|||||||||||.
BL00588___pcr 101 GAAGCGGAAAGACGCGGGTATTGACGCACCGCATTGCGTATTTAATGGCG 150
BSNT_01132___ 151 GAGAAGCATGTGGCGCCGTGGAACATTCTGGCGATCACATTTACAAATAA 200
|||||||..||.||.|||||||||||.||||||||.||||||||.||.||
BL00588___pcr 151 GAGAAGCGCGTTGCCCCGTGGAACATACTGGCGATTACATTTACGAACAA 200
BSNT_01132___ 201 AGCGGCACGCGAAATGAAAGAACGTGTGGAAAGCATCCTTGGACCCGGCG 250
||||||..|.||||||||||||||||||||||||||.||.|||||.||.|
BL00588___pcr 201 AGCGGCCAGAGAAATGAAAGAACGTGTGGAAAGCATTCTCGGACCGGGAG 250
BSNT_01132___ 251 CGGACGATATCTGGATTTCCACATTCCACAGCATGTGCGTGCGGATCTTG 300
||||.||.|||||||||||.||.|||||||||||||||||..|.||.|||
BL00588___pcr 251 CGGATGACATCTGGATTTCGACGTTCCACAGCATGTGCGTCAGAATTTTG 300
BSNT_01132___ 301 CGCAGAGATATCGACCGGATTGGGATCAACCGAAATTTCTCCATCCTTGA 350
||.|||||.||||||.|.||.||.||||||||.||||||||.||.|||||
BL00588___pcr 301 CGGAGAGACATCGACAGAATCGGCATCAACCGGAATTTCTCGATTCTTGA 350
BSNT_01132___ 351 TACGGGTGACCAGCTTTCAGTGATCAAGGGGATTTTGAAGGAGCGCAATC 400
||||..||||||||||||.||.||.||.||.||..||||.||..|.||..
BL00588___pcr 351 TACGTCTGACCAGCTTTCCGTCATTAAAGGAATCCTGAAAGAAAGAAACA 400
BSNT_01132___ 401 TTGATCCGAAGAAGTTTGACCCGAGAAGCATCCTCGGTACGATCAGCAGT 450
|.||||||||.||.||.||.|||||||||||.||.||..|||||||||||
BL00588___pcr 401 TCGATCCGAAAAAATTCGATCCGAGAAGCATACTAGGATCGATCAGCAGT 450
BSNT_01132___ 451 GCGAAAAACGAATTGACCGAACCGGAGGAATTCTCTAAAGTTGCTGGCGG 500
|||||||||||.||||.||..|||||.||||.|...|||...||.|||||
BL00588___pcr 451 GCGAAAAACGAGTTGATCGCCCCGGAAGAATACGAGAAAACAGCCGGCGG 500
BSNT_01132___ 501 CTACTACGATCAGGTGGTCAGCGATGTATATGCTGATTATCAGAAGAAGC 550
.|..|..||.||.||.|||||||||||.||....||||||||||||||.|
BL00588___pcr 501 TTTTTTTGAACAAGTCGTCAGCGATGTCTACAAAGATTATCAGAAGAAAC 550
BSNT_01132___ 551 TATTGAAAAACCAGTCGCTCGATTTTGACGATTTGATTATGACGACGATT 600
|...||||||||||||||||||||||||||||||||||||||||||||||
BL00588___pcr 551 TGCGGAAAAACCAGTCGCTCGATTTTGACGATTTGATTATGACGACGATT 600
BSNT_01132___ 601 AAACTGTTTGACCGAGTGCCTGAAGTGCTTGAATTTTATCAGCGCAAATT 650
...|||||||||||.|||||.|||||||||||||..||.|||||.|||||
BL00588___pcr 601 GTCCTGTTTGACCGGGTGCCGGAAGTGCTTGAATACTACCAGCGGAAATT 650
BSNT_01132___ 651 CCAGTACATCCATGTTGATGAGTATCAGGATACGAACAGGGCGCAATACA 700
|||.|||||.|||||.|||||||||||||||||||||||||||||.||..
BL00588___pcr 651 CCAATACATTCATGTCGATGAGTATCAGGATACGAACAGGGCGCAGTATT 700
BSNT_01132___ 701 TGCTCGTTAAGCAGCTTGCCGAGCGTTTCCAGAACCTTTGCGTTGTCGGG 750
|||||||.||..|..|.||..||||.|||||.|||.|.||||||||||||
BL00588___pcr 701 TGCTCGTCAAAAAAATGGCGCAGCGCTTCCAAAACATCTGCGTTGTCGGG 750
BSNT_01132___ 751 GATTCTGATCAGTCAATCTACAGATGGCGCGGCGCGGATATCACCAACAT 800
||.||.||.|||||.|||||||||||||||||.|||||||||.|||||||
BL00588___pcr 751 GACTCCGACCAGTCGATCTACAGATGGCGCGGAGCGGATATCGCCAACAT 800
BSNT_01132___ 801 CCTTTCATTTGAAAAAGATTATCCGAATGCAAGCGTGATTTTGCTAGAAC 850
|||.||.|||||||||||.|||||||||||.|||||.|||.||||.||||
BL00588___pcr 801 CCTGTCGTTTGAAAAAGACTATCCGAATGCGAGCGTCATTCTGCTCGAAC 850
BSNT_01132___ 851 AAAACTATCGTTCAACGAAACGGATTTTGCGTGCGGCTAACGAGGTCATC 900
|||||||..|.||.||.||.|||||.|||...|||||.||.||.||.||.
BL00588___pcr 851 AAAACTACAGATCGACAAAGCGGATATTGAACGCGGCCAATGAAGTGATT 900
BSNT_01132___ 901 AAAAACAACTCTAACCGCAAACCGAAAAATTTGTGGACGGAAAACGATGA 950
.|.||||||||.|||.|.||.||||||||..|.|||||.|||||.||.||
BL00588___pcr 901 CAGAACAACTCAAACAGAAAGCCGAAAAACCTCTGGACCGAAAATGACGA 950
BSNT_01132___ 951 AGGCATAAAAATTTCCTATTATC-GCGGTGATAATGAATTCGGAGAAGGA 999
|||....|||||.|||||.| || |.||.||.||.|||||.||.|||||.
BL00588___pcr 951 AGGGGCGAAAATCTCCTACT-TCAGAGGCGACAACGAATTTGGCGAAGGC 999
BSNT_01132___ 1000 CAGTTTGTGGCCGGTAAAATTCA-TCAGCTTCACAGCTCAGGCAAGCGGA 1048
||.|||||.||.||.|||| ||| ..||||...|.||||.||.||.||
BL00588___pcr 1000 CAATTTGTCGCGGGCAAAA-TCAGGGAGCTCGTCGGCTCTGGAAAACG-- 1046
BSNT_01132___ 1049 AGC--TGTCTGATATCGCCATATTATACCGGACAAACGCGCAGTCCCGTG 1096
|.| |.||.||||||||.||.||.||||||||.|||||.|||||.||.|
BL00588___pcr 1047 ATCCTTCTCAGATATCGCGATTTTGTACCGGACGAACGCCCAGTCGCGGG 1096
BSNT_01132___ 1097 TGATTGAGGAAACGCTTCTCAAAGCGGGCTTGAACTATAACATTGTCGGC 1146
|.||||||||||||||..|.||.|||..|.|.|||||.|||||.||||||
BL00588___pcr 1097 TCATTGAGGAAACGCTGATGAAGGCGAACATCAACTACAACATCGTCGGC 1146
BSNT_01132___ 1147 GGCACAAAGTTCTATGACAGAAAAGAAATTAAAGACATTCTTGCGTACCT 1196
|||||.|||||||||||||||||||||||.||.|||||.||.|||||..|
BL00588___pcr 1147 GGCACGAAGTTCTATGACAGAAAAGAAATCAAGGACATCCTCGCGTATTT 1196
BSNT_01132___ 1197 GCGCCTCGTATCCAATCCGGATGACGATATCAGTTTCACGCGCATTGTCA 1246
|||||||||..|.||.||.||.|||||||||||.||..||||.||.||.|
BL00588___pcr 1197 GCGCCTCGTCGCAAACCCTGACGACGATATCAGCTTTGCGCGGATCGTGA 1246
BSNT_01132___ 1247 ATGTGCCGAAGCGCGGAGTCGGCGCGACATCACTTGAAAAAATCGCTTCG 1296
|.||.|||||||||||.|||||.|||||.|||.|.||.||||||||..|.
BL00588___pcr 1247 ACGTCCCGAAGCGCGGCGTCGGTGCGACTTCAGTCGATAAAATCGCGGCC 1296
BSNT_01132___ 1297 TATGCGGCCATAAACGGCTTGTCCTTTTTCCAAGCGATTCAG-CAGGTTG 1345
|||||.|.|||.|||||..||||.||.||..||||| .||.| |||||||
BL00588___pcr 1297 TATGCCGACATGAACGGTATGTCTTTATTTGAAGCG-CTCGGCCAGGTTG 1345
BSNT_01132___ 1346 ATTTTATCGGCGTCAGTGCCAAAGCGGCAAACGCGCTTGA-CAGCTTTAG 1394
|.|||||||||.|||||||.|.||||||.||||||||||| .|| ||.||
BL00588___pcr 1346 ACTTTATCGGCCTCAGTGCTAGAGCGGCCAACGCGCTTGATGAG-TTCAG 1394
BSNT_01132___ 1395 ACAGATGATTGAAAACCTGACCAATATGCAGGATTACTTATCCATTACAG 1444
|||||.|||.|||||||||||.|||||||||||.|||||||||.|.||||
BL00588___pcr 1395 ACAGACGATCGAAAACCTGACGAATATGCAGGAATACTTATCCGTCACAG 1444
BSNT_01132___ 1445 AGCTGACAGAAGAAATTCTTGATAAGACGGAATACAGAGAAATGCTGAAG 1494
||||.||.||||||||.|||||.||.||.||||||.|.|||||||||||.
BL00588___pcr 1445 AGCTTACGGAAGAAATCCTTGAAAAAACCGAATACCGCGAAATGCTGAAA 1494
BSNT_01132___ 1495 GCTGAGAAATCGATCGAAGCCCAAAGCCGTTTAGAAAATATCGACGAGTT 1544
||.||.|||||..|.||.||.||.|||||..|.||.|||||||||||.||
BL00588___pcr 1495 GCGGAAAAATCCTTGGAGGCGCAGAGCCGCCTTGAGAATATCGACGAATT 1544
BSNT_01132___ 1545 CCTGTCTGTTACGAAAAACTTTGAACAGAAAAGTGAAGACAAGACACTCG 1594
.||.||.||.||||||||||||||.|||.||||.||||||||..|.||||
BL00588___pcr 1545 TCTCTCCGTAACGAAAAACTTTGAGCAGCAAAGCGAAGACAAATCGCTCG 1594
BSNT_01132___ 1595 TTGCGTTCCTGACAGACTTGGCATTGATCGCAGATATTGATCAGCTCGAT 1644
|.||.||..||||.||.|||||..|.|||||.|||||.||||||||.|||
BL00588___pcr 1595 TCGCTTTTTTGACCGATTTGGCGCTCATCGCCGATATCGATCAGCTTGAT 1644
BSNT_01132___ 1645 CAGCAGGAGGAAGAGTCAGGCGG----CAAGGATGCGATCACCCTGATGA 1690
|||.||||.||||||.| ||| ||| ||.|||.|||.|.|.||||
BL00588___pcr 1645 CAGAAGGAAGAAGAGAC---CGGAAATCAA-GACGCGGTCATCTTAATGA 1690
BSNT_01132___ 1691 CACTGCACGCCGCGAAAGGACTGGAGTTCCCGGTTGTTTTCTTGATGGGG 1740
|.||.||.||.||.||||||||.||.||||||||.||.|||.||||||||
BL00588___pcr 1691 CGCTTCATGCTGCAAAAGGACTCGAATTCCCGGTCGTGTTCCTGATGGGG 1740
BSNT_01132___ 1741 CTTGAAGAAGGCGTCTTCCCGCACAGCCGTTCACTCATGGAGGAAGCGGA 1790
|||||||||||.||.||||||||||||||.||.||.||||||||||||||
BL00588___pcr 1741 CTTGAAGAAGGAGTGTTCCCGCACAGCCGCTCCCTGATGGAGGAAGCGGA 1790
BSNT_01132___ 1791 AATGGAAGAAGAACGCCGCCTTGCGTACGTTGGGATTACAAGGGCTGAAC 1840
.|||||||||||.||..|.||.||||||||.||.||.||.||||||||..
BL00588___pcr 1791 GATGGAAGAAGAGCGGAGACTCGCGTACGTCGGCATCACGAGGGCTGAGG 1840
BSNT_01132___ 1841 AGGAGCTTTATCTGACCAATGCTAAAATGCGCACCTTGTTTGGCCGGACA 1890
|.||.||||||.|.||.||.||....|||||.||.|||||.||..|.||.
BL00588___pcr 1841 AAGAACTTTATTTAACGAACGCGCGGATGCGGACGTTGTTCGGAAGAACG 1890
BSNT_01132___ 1891 AATATGAACCCGGAATCTCGCTTCATTGCTGAAATACCGGATGATTTATT 1940
|||||||||||||||||..|.||||||||.|||||||||||.||.|||||
BL00588___pcr 1891 AATATGAACCCGGAATCAAGGTTCATTGCGGAAATACCGGAGGAATTATT 1940
BSNT_01132___ 1941 GGAAAACCTAAATG---AGAAAAAAGAAACGAGAGCGACGTCTGCGAGAA 1987
|||.||.|||||.| ||||||||||...||.|.||.|||.|| |||
BL00588___pcr 1941 GGACAATCTAAACGAGAAGAAAAAAGATCTGAAAACGCCGTTTG---GAA 1987
BSNT_01132___ 1988 AAATGC---AGCCGAGACGCGGCCCTGTTTCACGCC---CCGTATCCTAC 2031
.||.|| |||.|||| |||||.|||.|.||.| |.|.|||.||
BL00588___pcr 1988 GAAAGCCCGAGCGGAGA---GGCCCCGTTACCCGTCCGGCTGCATCGTA- 2033
BSNT_01132___ 2032 GCCAGCAAAACAGGCGGCGACACCTTAAACTGGGCAGTCGGAGATAAGGC 2081
|||||||||.|||||||||..|.|.||.|||||||||||.||.||.||
BL00588___pcr 2034 --CAGCAAAACCGGCGGCGACGGCGTCAATTGGGCAGTCGGCGACAAAGC 2081
BSNT_01132___ 2082 GGGCCATAAAAAATGGGGAACAGGAACTGTCGTCAGCGTGAAAGGCGAAG 2131
...|||||||||||||||....|||||.||.||||||||.||.||....|
BL00588___pcr 2082 CTCCCATAAAAAATGGGGCGTCGGAACCGTTGTCAGCGTCAAGGGATCCG 2131
BSNT_01132___ 2132 GAGAAGGGACGGAGCTCGATATTGCCTTCCCGAGCCCTGTTGGCGTGAAA 2181
|.|||..|||.|||||.||.||.|||||.||||||||....||.|||||.
BL00588___pcr 2132 GCGAATCGACAGAGCTTGACATCGCCTTTCCGAGCCCGACCGGAGTGAAG 2181
BSNT_01132___ 2182 CGCCTGTTAGCAGCATTTGCTCCTATTGAAAAGCAGTAA 2220
||.||..|.||.||.|||||.||.|||||||||||.|||
BL00588___pcr 2182 CGTCTTCTCGCGGCCTTTGCGCCAATTGAAAAGCAATAA 2220
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