Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01919 and BL00584
See
Amino acid alignment /
Visit
BSNT_01919 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:27
# Commandline: needle
# -asequence dna-align/BSNT_01919___yjbB.1.5803.seq
# -bsequence dna-align/BL00584___yjbB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01919___yjbB-BL00584___yjbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01919___yjbB-BL00584___yjbB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01919___yjbB
# 2: BL00584___yjbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1513
# Identity: 766/1513 (50.6%)
# Similarity: 766/1513 (50.6%)
# Gaps: 482/1513 (31.9%)
# Score: 1533.0
#
#
#=======================================
BSNT_01919___ 1 ATGATAACATTTACAATTAGA--GGAAAAAAACGGAGGCGAAATACG--- 45
||.|||.|| |||.|.|| ||||..|.| ||| .||
BL00584___yjb 1 ---ATGACAATT-CAAGTCGACTGGAATGATA-------GAA--TCGTGT 37
BSNT_01919___ 46 ATTCAATTTCT------GCATAAC------------AAAAATGTTT--TT 75
|||| ||.|| ||||||| |||||..||| .|
BL00584___yjb 38 ATTC--TTCCTCTCTTGGCATAACCGTCTGGAAACAAAAAAACTTTAGAT 85
BSNT_01919___ 76 GCACTATTGCTGTCTCAA-------------TCTTTTCAATCTTTAGCAG 112
.|| |||.|..|||.||| ||...||||||||.|
BL00584___yjb 86 ACA-TATGGGCGTCGCAAACAGCGCAGGCTGTCGGATCAATCTTGA---- 130
BSNT_01919___ 113 GAGTCCTCGTCACAATCGTTTTAATGGTCCGGGTCTATCAAATG--ACTG 160
|.||.|||.||.|.|||||| |.|.|||..||.| ||..
BL00584___yjb 131 ---------TGACGATCATTGTCATGGTC--GATGTATTTAAGGAAACGA 169
BSNT_01919___ 161 ACTCTGTTT---------------TTTTGGCGGGCCTTATTTTATCGTTC 195
|||||||.| ||||||| ||||||
BL00584___yjb 170 ACTCTGTATTCGGATCCGGTCTGGTTTTGGC---------TTTATC---- 206
BSNT_01919___ 196 ATGTCGTTTGCGAGTATA------GCAGCAA-----GCTTTT-------- 226
.|||||.|..|||.|| |.|||.| ||||||
BL00584___yjb 207 --CTCGTTCGGCAGTGTATTAGGCGGAGCGATCGCTGCTTTTGCTATTCA 254
BSNT_01919___ 227 GCGTCTC--TCCGGTGCTTCGCATTCTCGGTTTTAAAAAGGTGCTTGTGG 274
||||||| ||.|.||| |||.||..||.||
BL00584___yjb 255 GCGTCTCGATCTGCTGC-----------------AAACAGCGGCCTG--- 284
BSNT_01919___ 275 GAGCGAATCT-GCTGAGAGCGGTCTTTACAATCCTGATGGCATACAGCGT 323
|..||..| |.|.||||||||||.|.||.| ||.||.||
BL00584___yjb 285 --GTCAACATGGTTCAGAGCGGTCTGTGCATT---------ATGCATCG- 322
BSNT_01919___ 324 CACTCATCACGGACAGGCATTCTTTTGGATTACGCTGCTGTTTGTGTTTT 373
.||.|| |.||.||..||||.||||.|| || |.|.|.
BL00584___yjb 323 -GCTTAT--------GCCAATCGCTTGGCTTACCCT-CT-----TATATC 357
BSNT_01919___ 374 GTTTTTC--CTTCGCGGGCGCTTTTTTTCAGCCGGC-AAGATTTG--CGC 418
.|||.|| || |||.||||| || |||.|||| .||
BL00584___yjb 358 ATTTATCTGCT--------GCTATTTTT------GCAAAGCTTTGTCGGC 393
BSNT_01919___ 419 TGCTG--------CC----------GATTATTGTTCCAAAGAAGCAATAT 450
|.||| || |.|||.|||.|| ||||.||
BL00584___yjb 394 TCCTGGTATACTCCCGCACAGTTAGGTTTACTGTACC----AAGCCAT-- 437
BSNT_01919___ 451 GTAAAA---GCGAAT-GGTG--TG-ATC--------TC-------TCTCT 478
||||| ||||.| .||| || ||| || ||
BL00584___yjb 438 -TAAAAAGCGCGATTACGTGGCTGCATCGGGAAGCATCGTAGCGGTC--- 483
BSNT_01919___ 479 CGAATCAATTATTCTTAACA----GCAGGCTGGGGCCTTGGAGGCCTTCT 524
||.||.||..|| || |||||||||||.||.||.|||.||.|
BL00584___yjb 484 --AACCAGTTTGTC----CAGGCGGCAGGCTGGGGTCTCGGCGGCTTTTT 527
BSNT_01919___ 525 GACGTACGCCGTCCCTTTTG-----AACT----CATTGTCGGCGCTGCTA 565
.| ||.||||| .||| |.|||.|.| |.
BL00584___yjb 528 AA----------CCGTTTTGGCCCAGACTTATACGTTGACAG------TG 561
BSNT_01919___ 566 TTTGC-------CTGTTTGTTC-TATCGGGAGC-TTCCATCAGTGTGCTG 606
|||.| ||.||| ||| ||||.|| || ||..|||||..|||.|
BL00584___yjb 562 TTTACAGCAGCACTCTTT-TTCATATCAGG-GCTTTTAATCAGATTGCCG 609
BSNT_01919___ 607 CATGTAAATGAAGAAGAGGCTGTAGGAACTGCTGAAACAGCATCTGC-CA 655
.||.|.| ||.|||.|..|.| ..||..|.|||.||| |.|| ||
BL00584___yjb 610 GATTTCA---AAAAAGCGATTAT---CCCTCGTCAAAAAGC--CCGCGCA 651
BSNT_01919___ 656 GAA---------------GTATA-TGGAAGGATTTAATGATCATCCCTAT 689
.|| ||.|| .|||||.| |.||.|.|
BL00584___yjb 652 CAATCGGTCTGGCGCACTGTTTACAGGAAGAA----------AACCGTTT 691
BSNT_01919___ 690 TGTAAGAGAC--ATTACTGTAATGGACATGATAGAAGCTTTGGCGGGTTC 737
|| | .||||..|.|||||||||...||||.|||.||...|.|
BL00584___yjb 692 TG-------CTGCTTACGATGATGGACATGTCGGAAGGTTTAGCAAATGC 734
BSNT_01919___ 738 CGTATGGTCATCTGCTATTCTCCTCGCATTTACT---GCGGCTGTTTTGC 784
.||.|||.|.||.||..||.|.||.||.|||||| |.||| ..||.
BL00584___yjb 735 AGTCTGGACTTCCGCCGTTTTGCTGGCTTTTACTAAAGAGGC---GCTGA 781
BSNT_01919___ 785 ATGAAACAGAGGTGTGGTGGGGGATGTTTAACGCTTCCTATTTTATAGGC 834
||.||..|||||..||||||||..|..|.||.||....||||||.|.||.
BL00584___yjb 782 ATAAAGGAGAGGCTTGGTGGGGATTCATCAATGCCGGTTATTTTTTGGGA 831
BSNT_01919___ 835 GCAATTGTCGGCAGTGTGATTGCCATTCGTTTTTC----TTCTTTTTT-- 878
||.|||.|.||| |.||||| || |.||.||||
BL00584___yjb 832 GCGATTTTGGGC---------GGCATTC-----TCGCTGTGCTCTTTTCC 867
BSNT_01919___ 879 --TGAGCGGAATA-------TGGGCT-ATGCCATTATGTTCAGCTCGCTT 918
..|||..||.| |||.|| ||| |||.|.||..||||..||
BL00584___yjb 868 AACCAGCTCAAAAAAAGGCTTGGCCTCATG--ATTTTCTTTGGCTCCGTT 915
BSNT_01919___ 919 GTAATGTCGGCGCT---GACCCTTTTGTTTTCATTTTC-TCCAGTCC--- 961
..|||| ||| .| .||.|||||.||..|.|.||| ||||..||
BL00584___yjb 916 TCAATG--GGC-ATCACAACGCTTTTATTCGCCTATTCGTCCAACCCCCT 962
BSNT_01919___ 962 CATTT---TTATGCGCTCTGGCTTGTGCTGCAATGGGGCCTTTTTATCAG 1008
|.||| ||||.|.||.|..|.|| ||||||||..|||||||.
BL00584___yjb 963 CCTTTCGGTTATCCTCTGTATCATG-------ATGGGGCCGCTTTATCAA 1005
BSNT_01919___ 1009 GTGCGTGATATTTGCCAGGAAACCATGCTGCAGGAGGTTATTCCCGAGCA 1058
||..|.||..|..||||| || |||||| ||....|
BL00584___yjb 1006 GTAAGAGACGTCAGCCAG---AC------------GGTTAT--CCTTCAA 1038
BSNT_01919___ 1059 GAAACGAATCGGAATCATG--------------------GCTGCAAAAAA 1088
||.|| || .||.|.||| ||.||.|||||
BL00584___yjb 1039 GATAC--AT-TGACTGATGAAGAGCGTGCACCGGTTACCGCCGCCAAAAA 1085
BSNT_01919___ 1089 TGCGATTTTGACTCCTTGGTCAGGCGTCACCTACTCCATTAT-GGGGCTA 1137
|.|.||||||.||.|.|||||...|.|.||...|.||||.|| ||||||
BL00584___yjb 1086 TACCATTTTGGCTGCATGGTCTATCATAACAATCGCCATCATGGGGGCT- 1134
BSNT_01919___ 1138 GTGGCTGA--TGCTGCTGGTGCGAAAATAGC--TTTTATCGCGGCTGCTG 1183
.||||.|| ||.|...|||.||| ||| .||||||||.||.||||
BL00584___yjb 1135 TTGGCAGACTTGATCGGGGTACGA----AGCGTATTTATCGCTGCCGCTG 1180
BSNT_01919___ 1184 CATTATAT-----ATCA-----TG--ACATTTCT-------GATT---GC 1211
.||||||| |.|| || ||||||.| |||| |.
BL00584___yjb 1181 TATTATATGCCGGAACAGCCGCTGCCACATTTTTCGTCCGGGATTTAAGA 1230
BSNT_01919___ 1212 ACTGGCGCAGCCCCGTCTGGTTCATTA-----CAGGCGA----GAAAATC 1252
|| |..||| ||..|||| || | |||.||| ||||||.
BL00584___yjb 1231 AC--GTACAG-CCAATCTG---CA--AGGCAGCAGACGAAAGGGAAAATA 1272
BSNT_01919___ 1253 GAGTTCA--ATGA 1263
|| | ||||
BL00584___yjb 1273 GA----AGGATGA 1281
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.