Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03148 and BL00583
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:49
# Commandline: needle
# -asequence dna-align/BSNT_03148___sqhC.1.5803.seq
# -bsequence dna-align/BL00583___sqhC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03148___sqhC-BL00583___sqhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03148___sqhC-BL00583___sqhC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03148___sqhC
# 2: BL00583___sqhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2044
# Identity: 1298/2044 (63.5%)
# Similarity: 1298/2044 (63.5%)
# Gaps: 299/2044 (14.6%)
# Score: 3688.0
#
#
#=======================================
BSNT_03148___ 1 ---------ATGGGCACACTTCAGGA---GAAAG---TGAGGCGTTTTCA 35
|| |||..|.|| ||||| |.||| ||
BL00583___sqh 1 TTGCGATCTAT------ACTAGAAGACGTGAAAGCTTTCAGG------CA 38
BSNT_03148___ 36 AAAGAAAACCATTACCGAG-TTAAGAGACAGGCAAA-ATGCTGATGGTTC 83
|||| ||..|..|.||| ||.| |.||||.|||| || ||||||||||
BL00583___sqh 39 AAAG---ACGCTCGCAGAGCTTCA-AAACAGACAAAGAT-CTGATGGTTC 83
BSNT_03148___ 84 ATGGACATTTTGCTTTGAAGGACCAATCATGAC--AAATTCCTTTTTTAT 131
.|||...|||||.||||||||.||..|.||||| |.|.| |||||.||
BL00583___sqh 84 GTGGCGGTTTTGTTTTGAAGGGCCCGTGATGACGGACAGT--TTTTTCAT 131
BSNT_03148___ 132 TTTGCTCCTTACCTCACTAGATGAAGGCGAAAATGAAAAAGAACTGATAT 181
|.||.|.||.||.||||| .|||||..|.|| ..||..|.|
BL00583___sqh 132 TCTGATGCTGACATCACT------CGGCGATCAGGA-----CTCTTCTCT 170
BSNT_03148___ 182 CATC-----CCTTGCAGCCGGCATTCATGCAAAACAGCAGC-CAGACGGC 225
|||| .|||||.|...|.||.|.|.|||..||| ||| .|||||||
BL00583___sqh 171 CATCGCAAGTCTTGCTGAACGAATCCGTTCAAGGCAG-AGCGAAGACGGC 219
BSNT_03148___ 226 ACATTTATCAACTATCCCGACGAAACGTGC-GGAAATCTAACGGCTACCG 274
.|.|||..|||..|.||.||.|||| |.|| ||.|||||.||.||.||.|
BL00583___sqh 220 GCGTTTCGCAATCACCCGGATGAAA-GAGCAGGCAATCTGACCGCGACAG 268
BSNT_03148___ 275 TCCAAGGATATGTCGGGATGCTGGCTTCAGG-----ATGTTTTCAC---A 316
||||.||.|||..|||.|||||||||||.|| ||| || |
BL00583___sqh 269 TCCAGGGCTATACCGGAATGCTGGCTTCGGGGCTCTATG-----ACCGGA 313
BSNT_03148___ 317 GATCTGAGCCGCACATGAAGAAAGCTGAACAATTTATCA---TCTCATAT 363
.|.|| |||||.|||.|||||||.|||...|||||.| .|.||
BL00583___sqh 314 AAGCT---CCGCATATGCAGAAAGCCGAAGCTTTTATTAAGGACGCA--- 357
BSNT_03148___ 364 GGCGGTTTGA--GACATGTTCATTTTATGACAAAATGGATGCTTGCCGCG 411
|||||.|||| |.| ||.||.||||||||.||.||||||||.|||||.
BL00583___sqh 358 GGCGGATTGAAGGGC--GTCCACTTTATGACGAAGTGGATGCTCGCCGCC 405
BSNT_03148___ 412 AACGGGCTTTACCCTTGGCC---TGCTTTGTATTTACCATTATCACTCAT 458
|||||.||.||.||.||||| .|| .|||.|.||..|.||..|..|
BL00583___sqh 406 AACGGTCTGTATCCATGGCCGAGAGC---CTATATTCCGCTCTCGTTTTT 452
BSNT_03148___ 459 GGCGCTCCC--CCCAACATTGCCGATTCATTTCTATCAGTTCAGCTCATA 506
|..|.|||| ||.| .||.|||.|.|||||.||.||.||||||.||||
BL00583___sqh 453 GCTGATCCCGTCCTA--TTTCCCGCTGCATTTTTACCATTTCAGCACATA 500
BSNT_03148___ 507 TGCCCGTATTCATTTTGCTCCTATGGCTGTAACACTCAATCAGCGATTTG 556
.||..|.||||||||||..||.|||||..|.||..|.||||.|||| ||.
BL00583___sqh 501 CGCAAGAATTCATTTTGTCCCCATGGCCATTACGTTTAATCGGCGA-TTC 549
BSNT_03148___ 557 TCCTTATTAACC--GCAATATTTCATCTCTTCGCCATCTCGATCCGCA-- 602
||.|||..||.| .||| ||....||.|||||.||.||.||| |.|
BL00583___sqh 550 TCTTTAAAAAACAACCAA-ATCGGCTCGCTTCGGCACCTGGAT--GAAGC 596
BSNT_03148___ 603 CATGACAAAAAATCCTTTCACTTGGCT-----TCGGTCTGATGCTTTCGA 647
||||.|||||||.|||.||...||||| ||.| .||.||.||
BL00583___sqh 597 CATGTCAAAAAACCCTCTCGAATGGCTGAACATCCG-----CGCCTTTGA 641
BSNT_03148___ 648 TGAAAGAGATCTCACGTCTATTTTGTCA-----CATTGGAAAC-GCGTTT 691
.|||||| |.|| ||||||.|.||| ||.||||||| || |.|
BL00583___sqh 642 CGAAAGA-ACCT----TCTATTCTTTCAATCTGCAATGGAAACAGC-TCT 685
BSNT_03148___ 692 TTC-ATGCACCATTTGCTT---TTCAGCAGCTGGGCCTACAGACAGCTAA 737
||| |||..| .|||| |.||.|||||.||..|..||.|.|..||
BL00583___sqh 686 TTCAATGGCC----GGCTTACGTCCATCAGCTCGGATTTGAGGCCGGCAA 731
BSNT_03148___ 738 AACGTATATGCTGGACCGGATTGAAAAAGATGGAACATTATACAGCTATG 787
||..||||||||||||.|.||.|||.||||.|||||..||||||||||||
BL00583___sqh 732 AAAATATATGCTGGACAGAATCGAAGAAGACGGAACGCTATACAGCTATG 781
BSNT_03148___ 788 CGAGCGCAACCATATATATGGTTTACAGCCTTCTGTCACTTGGTGTGTC- 836
|||||||.|||||.|..|||.||||||||||.||..|..|.||..|.||
BL00583___sqh 782 CGAGCGCGACCATGTTCATGATTTACAGCCTGCTTGCGATGGGAATATCT 831
BSNT_03148___ 837 ----ACGCTATTCTCCTATTATCAGGAGAGCGATTACCGGCATTAAA--- 879
||| |.||..||.|||..|.|||..|.|.|||.||.|||
BL00583___sqh 832 AAAAACG-----CCCCCGTTGTCAAAAAAGCAGTCAGCGGAATCAAAAGT 876
BSNT_03148___ 880 ------TCACTGGTGACTAAATGCAACGGGATTCCTTATCTGGAAAACTC 923
||| |..|| |..||.|.||.||| |..||.||||||||||
BL00583___sqh 877 CTTATTTCA-TCATG-CGGAAAGGAAGGGG----CCCATTTGGAAAACTC 920
BSNT_03148___ 924 TACTTCAACTGTTTGGGATACAGCTCTAATCAGCTATGCCCTTCAAAAAA 973
.|||||.||.||.||||||||.||.||.||||||||||||.|.||..||.
BL00583___sqh 921 AACTTCCACCGTCTGGGATACGGCCCTCATCAGCTATGCCATGCAGGAAT 970
BSNT_03148___ 974 ATGGTGTGACCGA--AACGGATGGCTCTGTTA---CAAAAGCAGCCGACT 1018
..||.|||.|.|| ||| || |||...| ||...||||||||||
BL00583___sqh 971 CCGGAGTGCCTGAACAAC--AT---TCTTCCACCTCATCGGCAGCCGACT 1015
BSNT_03148___ 1019 TTTTGCTAGAACGCCAGCATACCAAAACAGCAGATTGGTCTGTCAAAAAT 1068
...|.||..||.|.||||||...||||.|||.||.|||.|||||..||||
BL00583___sqh 1016 ACCTTCTCAAAAGACAGCATGTGAAAAAAGCGGACTGGGCTGTCTCAAAT 1065
BSNT_03148___ 1069 CCAAATTCA----GTTCCTGGCGGCTGGGGGTTTTCAAACATTAATACAA 1114
|| ||| ||.||||||||.|||||.||||||.||||.|||||||
BL00583___sqh 1066 CC----TCAAGCGGTCCCTGGCGGGTGGGGTTTTTCACACATCAATACAA 1111
BSNT_03148___ 1115 ATAACCCTGACTGTGACGACACTGCAGCCGTTTTAAAGGCGATTCC---- 1160
|.||.||.||.|..|||||.||.||.||.|..|||||.||.|||||
BL00583___sqh 1112 ACAATCCCGATTTGGACGATACCGCTGCGGCATTAAAAGCTATTCCGTTT 1161
BSNT_03148___ 1161 ---CCGCAATCATTCTCCTGCAGCATGGGAGCGGGGGGTATCTTGGCTTT 1207
|.|| .|||.|..||||||.|.||||||.|..|.|||||||
BL00583___sqh 1162 CAACGGC-------GTCCGGATGCATGGAACCGGGGGCTCGCCTGGCTTT 1204
BSNT_03148___ 1208 TATCGATGCAAAACAATGACGGCGGATTTTCTGCTTTTGAAAAAAACGTG 1257
||||.|||||||||||.|||||.||.|||.|.||.|||||||||.|.||.
BL00583___sqh 1205 TATCCATGCAAAACAAGGACGGAGGGTTTGCGGCATTTGAAAAAGATGTT 1254
BSNT_03148___ 1258 AACCATCCACTGATCCGCCTTCTGCCGCTTGAATCCGCCGAGGACGCTGC 1307
.|||||||.||.||.||...|||||||||.|||||.||||..||.||.||
BL00583___sqh 1255 GACCATCCGCTTATTCGAAATCTGCCGCTCGAATCTGCCGCTGAGGCAGC 1304
BSNT_03148___ 1308 AGTTGACCCTTCAACCGCCGACCTCACCGGACGAGTACTGCA-CTTTTTA 1356
|||.||.||.|||||.||.|||.|.||||||||.||.||.|| ||..|..
BL00583___sqh 1305 AGTCGATCCGTCAACGGCAGACTTGACCGGACGCGTTCTTCATCTGCTCG 1354
BSNT_03148___ 1357 GGCGAGAAAGTTGGC--TTCACAGAAAAACAACAACATATTCAACGCGCA 1404
||| ..|||| ||| ||||||||.||.||.|......|.|..|||||.
BL00583___sqh 1355 GGC-TTAAAG--GGCGGTTCACAGATAACCATCCTGCGGTCCGGCGCGCC 1401
BSNT_03148___ 1405 GTGAAGTGGCT--ATTCGAACATCAGGAACAAA----ATGGGTCTTGGTA 1448
.|.|.|||||| || .|.|||||| ||| |.||.||||||||
BL00583___sqh 1402 CTCAGGTGGCTTGAT--CATCATCAG----AAAGCGGACGGCTCTTGGTA 1445
BSNT_03148___ 1449 CGGCAGATGGGGTGTTTGCTACATTTACGGCACTTGGGCTGCTCTTACTG 1498
.|||||||||||.||.||||..||||||||.||.|||||.||.||.||.|
BL00583___sqh 1446 TGGCAGATGGGGCGTCTGCTTTATTTACGGTACATGGGCCGCACTCACCG 1495
BSNT_03148___ 1499 GTATGCATGCATG-CGGGGTTGACCGAAAGCATCCCG--GTAT---ACAA 1542
|||||.|.|| || ||||||| .||| .||.||.| ||.| |.||
BL00583___sqh 1496 GTATGAAAGC-TGTCGGGGTT-TCCG---CCAACCAGACGTCTGTCAAAA 1540
BSNT_03148___ 1543 AAG-GCTCTGCGTTGGCTCAAATCCATACAAAATGATGACGGAAGCTGGG 1591
||| |.|||.| |||||.|||||.||.||...|||.|||||||||||||
BL00583___sqh 1541 AAGCGATCTCC--TGGCTAAAATCGATCCAGCGTGAAGACGGAAGCTGGG 1588
BSNT_03148___ 1592 GAGAATCCTGCAAAAGCGCCGAAATCAAAAC-ATATGTACCGCTTCATAG 1640
|||||||.|||||||||...| ||.|.||.| .|.|||.||.|||||...
BL00583___sqh 1589 GAGAATCTTGCAAAAGCTGTG-AAGCGAAGCGTTTTGTCCCTCTTCACTT 1637
BSNT_03148___ 1641 AGGAACCATTGTACAAACGGCCTGGGCTTTAGACGC---TTTGCTCACAT 1687
.|||||..||||.|||.|..|.|||||..|.||.|| |||||
BL00583___sqh 1638 TGGAACAGTTGTTCAATCTTCATGGGCGCTGGAGGCGCTTTTGC------ 1681
BSNT_03148___ 1688 ATGAAAATTCCGAACATCCGTCTG---------TTGTGAAAGGCATGCAA 1728
||.|| ||.|.||||..|| |..|.|||||.||.|..
BL00583___sqh 1682 ---AATAT---GAGCGTCCGGATGACCCACAGATCATAAAAGGGATCCGT 1725
BSNT_03148___ 1729 TACCTTACCG----ACAGC---AGTTCGCAT-AGCGCCGATAGCCTCGCG 1770
|..||.|.|| ||| | ||.||||.| ||| |.||||..
BL00583___sqh 1726 TTTCTCATCGATGAACA-CGAAAGCTCGCGTGAGC-------GACTCGAA 1767
BSNT_03148___ 1771 TATCCAGCAGGGATCGGATTGCCGAAGCAATTTTATATTCGCTATCACAG 1820
||.||..|.||.|||||..|||||||.|||||.||.||.|||||||||||
BL00583___sqh 1768 TACCCGACGGGAATCGGGCTGCCGAACCAATTCTACATCCGCTATCACAG 1817
BSNT_03148___ 1821 TTATCCATATGTATTCTCTTTGCTGGCTGTCGGGAAATATTTAG---ATT 1867
||||||.|.|||.||.||.|||||.||| |..|| |||
BL00583___sqh 1818 TTATCCTTTTGTGTTTTCATTGCTCGCT-----------TCAAGCGCATT 1856
BSNT_03148___ 1868 CTATTGAAAAGGAGACAGC--AAATGAAACGTGA---------- 1899
||||.|||| ||| |||||| |.||
BL00583___sqh 1857 -TATTAAAAA------AGCGGAAATGA---GGGAGACATATTGA 1890
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