Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03591 and BL00563

See Amino acid alignment / Visit BSNT_03591 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:35
# Commandline: needle
#    -asequence dna-align/BSNT_03591___yqiQ.1.5803.seq
#    -bsequence dna-align/BL00563___yqiQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03591___yqiQ-BL00563___yqiQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03591___yqiQ-BL00563___yqiQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03591___yqiQ
# 2: BL00563___yqiQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 966
# Identity:     638/966 (66.0%)
# Similarity:   638/966 (66.0%)
# Gaps:         108/966 (11.2%)
# Score: 1910.5
# 
#
#=======================================

BSNT_03591___      1 ATGTCGTGGATCGTCAATAAGCAATCGTCACAAGAGGAGCTTGCC-GGGC     49
                     ||   ||||||.|||...||.|||||..|.||.||.|||||.||| ..||
BL00563___yqi      1 AT---GTGGATTGTCTCGAAACAATCAACTCAGGAAGAGCTGGCCAATGC     47

BSNT_03591___     50 GTTTCCGCAAGCTGATGTCAGCACCGGACATTCTTCAAATTCCCGGCGCC     99
                      .|||.|.||.||||||..||||||.||.|||.|..||||.|||||.|..
BL00563___yqi     48 -ATTCAGAAAACTGATGAAAGCACCTGATATTTTGAAAATACCCGGTGTT     96

BSNT_03591___    100 CATGACGGGATGGCCG-CTTTGCTTGCGAAAGAAGC--CGGTTTTTCTGC    146
                     ||||||||.|||||.| |.||.|   ||.||.||.|  |||.||....||
BL00563___yqi     97 CATGACGGAATGGCTGCCATTAC---CGCAAAAAACATCGGCTTCAAAGC    143

BSNT_03591___    147 TATTTATTTGTCCGGTGCTGCCTATACAGCCAGCAGGGGGCTGCCTGATT    196
                     ..|.|||.|.|||||.||.|||||.||.||.|||.|.|||||.|||||..
BL00563___yqi    144 GCTCTATCTCTCCGGGGCCGCCTACACGGCAAGCCGCGGGCTCCCTGACC    193

BSNT_03591___    197 TAGGGATCAT-CACATCGGCA-GAGATAGCTGAACGGGCCAAAGATCTTG    244
                     |.||.||.|| |||..|  || ||.||.||||||...||.|..||.||||
BL00563___yqi    194 TCGGAATGATACACTCC--CAGGAAATCGCTGAAAAAGCAAGCGAACTTG    241

BSNT_03591___    245 TACGTGCAGCTGATCTGCCTCTGCTTGTGGATATCGATACGGGATTTGGC    294
                     |..|.||.||..||||.||.||..|.||.||||||||.||.||.|..|||
BL00563___yqi    242 TGAGAGCCGCAAATCTTCCGCTTTTGGTCGATATCGACACCGGCTACGGC    291

BSNT_03591___    295 GGTGTCTTAAATGCCGCCCGAACAGCCCGGGAGATGCTTGA-AGCAAGGG    343
                     ||||||.|||||||.||.||.||.|||...||.|||...|| ||| ||.|
BL00563___yqi    292 GGTGTCCTAAATGCGGCACGCACGGCCGCCGAAATGGCCGAGAGC-AGAG    340

BSNT_03591___    344 TAGCAGCCGTTCAAATAGAAGACCAGCAGCTTCCAAAAAAATGCGGACAT    393
                     |.||||||||.|||||.|||||.|||||.||.||.|||||||||||||||
BL00563___yqi    341 TCGCAGCCGTCCAAATCGAAGATCAGCAACTGCCTAAAAAATGCGGACAT    390

BSNT_03591___    394 TTAAATGGCAAACAGCTAGT-TCCGATCA-AGGAAATG-GCGCAAAAAAT    440
                     ||||||||.|||..|||.|| .|||  || ||||.||| .||| ||||||
BL00563___yqi    391 TTAAATGGAAAAACGCTCGTACCCG--CAGAGGACATGATCGC-AAAAAT    437

BSNT_03591___    441 AAAAGCCATTAAACAAGCGGCACCCTCCCTTATTGTTGTTGCCCGTACTG    490
                     .|.|||.||.|||.||.|.||.||.||.||..||||.||.||.||.||.|
BL00563___yqi    438 TAGAGCGATAAAAGAAACCGCCCCTTCGCTCGTTGTCGTGGCTCGGACGG    487

BSNT_03591___    491 ATGCCAGGGC-GCAGGAAGGGCTTGATGCCGCAATAAAACGTTCAGAGGC    539
                     ||||.|..|| ||| ||||||.|.||.|||||       || ||||..||
BL00563___yqi    488 ATGCAAAAGCAGCA-GAAGGGATGGAAGCCGC-------CG-TCAGGCGC    528

BSNT_03591___    540 ------TTACAT--TGAGGCGGGAGCGGACGCAATTTTCCCGGAAGC---    578
                           |||.||  .||.||||||||.||.||.||.||.||.|||||   
BL00563___yqi    529 GCCAATTTATATGCCGACGCGGGAGCCGATGCCATCTTTCCTGAAGCATT    578

BSNT_03591___    579 -----GCTGCAGGCGGAGAATGAATTCCGCCAGTTTGCTGAGCGTATC-T    622
                          || ||||.|       ||||||||..|..|.|||       || |
BL00563___yqi    579 AACGAGC-GCAGCC-------GAATTCCGGGAAATGGCT-------TCTT    613

BSNT_03591___    623 CCGTT------CCGCTCCTTGCGAATATGACTGAATTTGGGAAAACGCCG    666
                     ||.||      ||||||||.||.||||||||.|||||.||.||||||||.
BL00563___yqi    614 CCATTAAAGCGCCGCTCCTGGCCAATATGACCGAATTCGGAAAAACGCCT    663

BSNT_03591___    667 TATTAT-CGTGCCGATGAATTCGAAGATATG--GGGTTTCA-CATGGTGA    712
                     |||||| || ||.||.||||||.||   |||  .||.|.|| ||||.|.|
BL00563___yqi    664 TATTATACG-GCTGACGAATTCCAA---ATGCTCGGCTGCAGCATGATTA    709

BSNT_03591___    713 TATATCCTGTCACCTCGCTTCGAGCGGCGGCAAAAGCTTGTGAGCGGATG    762
                     |.||.|||||.||.||.||.||.||.||.||.|||||||.|||||||.|.
BL00563___yqi    710 TTTACCCTGTGACTTCCCTGCGCGCCGCCGCGAAAGCTTATGAGCGGGTC    759

BSNT_03591___    763 TTTG-------GTTTGATGAAGGAGCACGGCTCACAAAAAGAAGGACTTC    805
                     ||.|       .||.||..|||  |||||     |||||.|..|..||..
BL00563___yqi    760 TTCGCGGAGATTTTCGAAAAAG--GCACG-----CAAAAGGGTGTGCTCG    802

BSNT_03591___    806 ATGATATGCAGACACGAAAAGAACTGTACGATACGATTTCTTATTATGAC    855
                     ||||.|||||||||||..|||||.|.||.|||.|||||..|||.||.|||
BL00563___yqi    803 ATGACATGCAGACACGCGAAGAATTATATGATGCGATTCATTACTACGAC    852

BSNT_03591___    856 TATGAAGCGTTAGACAAAACGATTGCCAAGACCGTTTTGCCTGA---CGA    902
                     ||||||....|.|||.|||..||||||||.||.||..|.||.||   ||.
BL00563___yqi    853 TATGAAAAACTGGACGAAAATATTGCCAAAACGGTGCTTCCCGAAATCGG    902

BSNT_03591___    903 ATAA------------    906
                     |.||            
BL00563___yqi    903 AAAAGAACACCGTTGA    918


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03591 and BL00563

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
