Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03594 and BL00561
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:36
# Commandline: needle
# -asequence dna-align/BSNT_03594___mmgD.1.5803.seq
# -bsequence dna-align/BL00561___mmgD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03594___mmgD-BL00561___mmgD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03594___mmgD-BL00561___mmgD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03594___mmgD
# 2: BL00561___mmgD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1199
# Identity: 781/1199 (65.1%)
# Similarity: 781/1199 (65.1%)
# Gaps: 163/1199 (13.6%)
# Score: 2255.5
#
#
#=======================================
BSNT_03594___ 1 ATGGAGGAG-AAACA----GCATTATTCTCCAGGGTTGGACGGTGTGATT 45
|||| | ||||| |.||| |...||.||.||.||.||.||.|||
BL00561___mmg 1 ATGG----GCAAACAAGGTGTATT-TAAACCGGGATTAGAAGGCGTTATT 45
BSNT_03594___ 46 GCGGCAGAAACTCATATTTCTTATCTT-GACACCCAGTCCAGC----CAG 90
||.|.||||||..|.||||||| |||| ||.||..| ||| ||.
BL00561___mmg 46 GCTGGAGAAACGAACATTTCTT-TCTTAGATACGGA----AGCGGAACAA 90
BSNT_03594___ 91 ATTTTGATACGGGGCTATGATTTAATAGAACTTTCTGAAACAAAAAGC-T 139
||..|.||....||||||||||||||.||||||.|.| ||||||||.| |
BL00561___mmg 91 ATCGTCATTAAAGGCTATGATTTAATCGAACTTGCAG-AACAAAAAACAT 139
BSNT_03594___ 140 ATCTGGAGCTTGTCCATTTATTGCTGGAGGGCAGGCTGCCAGAAGAAAGT 189
||||.||.||.|||.||.|..|.||..|.|..|.|||||||||...|| |
BL00561___mmg 140 ATCTTGACCTCGTCTATCTTCTCCTTCAAGATAAGCTGCCAGATCCAA-T 188
BSNT_03594___ 190 GAAATGGAAACGCTGGAACGTAAAA------TAAACAGTGC--CTCAAGC 231
|.|||.|||| |||| .|.||| ||||.||||| .|.||
BL00561___mmg 189 GGAATTGAAA----GGAA-TTGAAAGCGCTTTAAAAAGTGCGTATGAA-- 231
BSNT_03594___ 232 CTG-CCTGCTGATCATCT---CCGTCTGCTTGAGCTGCTCCCTAAGGACA 277
||| ||.||.|| |||| | |.|.||..||..|||.||.||..|.|
BL00561___mmg 232 CTGCCCGGCGGA--ATCTATAC--TATTCTGAAGTCGCTTCCGAATAATA 277
BSNT_03594___ 278 CTCATCCAATGGATAGTCTGCGTACCGGCCTGTCGGCACTTGCTGGCTAT 327
|.|||||.||||||...||.||.|||||..|.||.||..|.||.||.|||
BL00561___mmg 278 CCCATCCGATGGATGCGCTCCGAACCGGGATTTCCGCTTTAGCAGGATAT 327
BSNT_03594___ 328 GATCGGCAAATTG-ATGATCGGTCTCCTTCCGCAAACA-AAG-AACGCGC 374
|||| .|.||||| ||||..|.||||...|.||||||| ||| ||.||||
BL00561___mmg 328 GATC-CCGAATTGAATGACAGATCTCAAGCAGCAAACAGAAGCAAAGCGC 376
BSNT_03594___ 375 ----CT--AT----CAGCTTCTTGGGAAAATGCCTGCCCTCACTGCTGCC 414
|| || |||.||| .|||.| |.||.||...|
BL00561___mmg 377 TGCGCTTGATCGCACAGGTTC---CGAATA---------TTACCGCCAAC 414
BSNT_03594___ 415 AGCTACAGGATCATTAATAAGAAAGAACCGATTCTTC-CGCTT--CAAAC 461
||||||.|.|||.||.|..||||| ||| .||.|| |||.| |||||
BL00561___mmg 415 AGCTACCGCATCCTTCACCAGAAA-AAC---GTCATCACGCCTGACAAAC 460
BSNT_03594___ 462 -CCTATCCTACAGTGCGAATTTTCTCTACATGATGACAGGGAAATTG--C 508
.||.||.|.|||...|||.|||.|.||.|||.|||| |||||..| |
BL00561___mmg 461 AGCTTTCATTCAGCCAGAACTTTTTATATATGCTGAC--GGAAAAAGAAC 508
BSNT_03594___ 509 CGTCTTCATTGGAAG-AACAG--ATTTTTGACCGGTCGCTCGTCCTGTAC 555
||.||.| ..||| ||||| .|.|||||.|.|.|..|..|.||.|||
BL00561___mmg 509 CGACTCC---CCAAGAAACAGCCGTCTTTGATCAGACATTAATGCTTTAC 555
BSNT_03594___ 556 AGTGAGCATGAGATGCCGAATTCAACCTTTGCGGCCAGGGTCATTGCATC 605
||.|||||.||.||||||||.||.||.|||||.||.||.|||||.|||||
BL00561___mmg 556 AGCGAGCACGAAATGCCGAACTCCACATTTGCCGCAAGAGTCATCGCATC 605
BSNT_03594___ 606 TACACATTCAGATCTTTATGGGGCTTTGACTGGGGCTGTCGCTTCCCTGA 655
.|||.|..|||||.|.||.||.|||||.||.||.||||..||.||.||.|
BL00561___mmg 606 GACAAACACAGATATATACGGTGCTTTCACAGGCGCTGCAGCATCGCTAA 655
BSNT_03594___ 656 AAGGGAATCTTCACGGAGGAGCAAACGAAGCTGTGATGTATTTGCTTTTG 705
||||..||.|.|||||.||.||.||.|||||.||.|||||..||||..|.
BL00561___mmg 656 AAGGACATTTGCACGGCGGTGCGAATGAAGCGGTCATGTACATGCTGCTC 705
BSNT_03594___ 706 GAGGCAAAAACGACATCTGATTTTGAGCAGCTTTTGCA---------AAC 746
||.|.|.||||.|.|||.| ||||.|||| |||
BL00561___mmg 706 GAAGGAGAAACAAAATCGG----------GCTTCTGCAAGCTGATTGAAC 745
BSNT_03594___ 747 AAAACTGAA-AAGAAAAGAAAAAATCATGGGCTTCGGCCACCGGGTGTAT 795
|.||.|.|| .|||||||||||||||||||||||.||.|||||.||.|||
BL00561___mmg 746 ATAAGTTAAGCAGAAAAGAAAAAATCATGGGCTTTGGGCACCGCGTCTAT 795
BSNT_03594___ 796 ATGAAAAAAATGGACCCGAGAGCACTCATGATGAAAGAGGCGCTGCAGCA 845
||||.|||||||||||||.|.|||..|.||.|||||.|||||||
BL00561___mmg 796 ATGAGAAAAATGGACCCGCGCGCAGCCTTGCTGAAAAAGGCGCT------ 839
BSNT_03594___ 846 ATTATGCG-------ATAAAGCCGG-TGACCATCGTTTATATGAGATGTG 887
.|||.|| |||||.|||| .|| ||...|||||||||||||||
BL00561___mmg 840 -CTATTCGCTTTCTCATAAAACCGGCAGA-CAGGATTTATATGAGATGTG 887
BSNT_03594___ 888 CGAAGCGGGTGAGCGGCTGATG-GAGAAGGAAAAAGGGCTTTACCCGAAT 936
|||.||.||.||...||||||| |.||| ||||||||.||.||.|||||.
BL00561___mmg 888 CGATGCCGGCGAAAAGCTGATGCGCGAA-GAAAAAGGCCTGTATCCGAAC 936
BSNT_03594___ 937 TTGGATTACTATGCTGCCCCAGTGTATTGGATGCTCGGCATACCGATTCC 986
.|.||.||||||||.||.|||||.||||...||||||||||||||||...
BL00561___mmg 937 CTCGACTACTATGCGGCTCCAGTCTATTACCTGCTCGGCATACCGATCGA 986
BSNT_03594___ 987 TTTATATACGCCGATCTTTTTCAGCGCGAGAACGTCCGGT-----TTATG 1031
|.|.|||||.|||||.||||| |||| |.|||..|||| ||| |
BL00561___mmg 987 TCTCTATACTCCGATATTTTT---CGCG-GCACGGTCGGTCGGTCTTA-G 1031
BSNT_03594___ 1032 CGCCCATGTGATCGAACAGCAT----ACCAATAATCGGCTCTTCCGTCCC 1077
|||.|||||.||.||||||||| || ||..||||.||||| ||
BL00561___mmg 1032 CGCGCATGTCATTGAACAGCATGAAGAC----AACAGGCTGTTCCG--CC 1075
BSNT_03594___ 1078 CGTGTCAGT----TACATGGGCCCGCGATA---TCAAACAAAACCATGA 1119
||.| ||| ||.|.|||.|||||..| |||..||.||
BL00561___mmg 1076 CGAG--AGTTCACTATACGGGACCGCGTCATCTTCATCCATAA------ 1116
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