Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04305 and BL00550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_04305___ytcI.1.5803.seq
# -bsequence dna-align/BL00550___ytcI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04305___ytcI-BL00550___ytcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04305___ytcI-BL00550___ytcI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04305___ytcI
# 2: BL00550___ytcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1664
# Identity: 1139/1664 (68.4%)
# Similarity: 1139/1664 (68.4%)
# Gaps: 148/1664 ( 8.9%)
# Score: 3806.0
#
#
#=======================================
BSNT_04305___ 1 GTGTTAAAACGTGAAGATTTAATTGCCCCTATGCAATATAATTTAGTGAA 50
||.|.|.|.||||||||.|||||.||...|.|.||||||...||..|
BL00550___ytc 1 ---TTGAGAAGAGAAGATTTGATTGCGCCGGAGAAGTATAATGCGGTTGA 47
BSNT_04305___ 51 TGAAATGGAAAAGTTCA----GTGCCGCTGGACAAAAAACCGCTCTTCTG 96
||||||.|||||.||.| .|.|||| .|.||.|||||..|..|.
BL00550___ytc 48 TGAAATTGAAAAATTTAAATCTTCCCGC----GATAAGACCGCATTGATC 93
BSNT_04305___ 97 TGGGAGGACGAGTCGGGTAAGCAAGAATCTTGGTCGTATGAAAAGCTGAT 146
|||||.||.||.||.||....||||..||.|||||.||||||||..||||
BL00550___ytc 94 TGGGAAGATGAATCAGGGCGTCAAGTGTCATGGTCCTATGAAAAATTGAT 143
BSNT_04305___ 147 GGAAGAAACAAATAAAATCGG-AGCGGCCTTAGCTGATCTTGGATTTAAA 195
.|||.|..|..|.|||||||| |||....|.|.|.|.|| ||||.|.|||
BL00550___ytc 144 TGAAAAGGCTTACAAAATCGGCAGCATATTGACCCGTTC-TGGACTGAAA 192
BSNT_04305___ 196 AAGGGAGACAAGCTGATTGTAATGGTTCCGCGGGTGCTTGAAGCCTATGC 245
||.||.||||||||.||.||.|||.|.||||||.|.|..|||.|.|||||
BL00550___ytc 193 AAAGGTGACAAGCTTATCGTGATGATGCCGCGGATACCGGAAACGTATGC 242
BSNT_04305___ 246 TGTTTATTTGGCTATCCTGAAATCAGGAATGGTTGTCATTCCGTGCTCCG 295
.||.||..||||.||..|.|||.|.||||||||.|||||.||.||.||||
BL00550___ytc 243 CGTGTACATGGCCATTTTAAAAGCTGGAATGGTGGTCATCCCATGTTCCG 292
BSNT_04305___ 296 AAATGCTTCGCGCGAAAGATCTT-GAATACCGGATTGAACATGCAGAGGT 344
||||||||||.|||||||| ||| ||.|||.||||..|.|||||||..||
BL00550___ytc 293 AAATGCTTCGGGCGAAAGA-CTTGGATTACAGGATCAAGCATGCAGGCGT 341
BSNT_04305___ 345 AAAAGGCGCTATCGTCTACTCAGAATTTATTGGCGCTTTCCGGGATGTCA 394
.|||||.||..||||.||.||||.||||.|||..|||||.|..|||||..
BL00550___ytc 342 CAAAGGAGCCGTCGTATATTCAGCATTTCTTGATGCTTTTCTAGATGTTC 391
BSNT_04305___ 395 GTACGACTGACAAACTGATTA----CACTGTC--TATT-------GGTGA 431
|| .|||| | ||||||| |||| ||.||
BL00550___ytc 392 GT-------TCAAA------AGAGGCACTGTCGTTATTTGCCGTCGGAGA 428
BSNT_04305___ 432 A-------AATGATGCCGA--------CTGGAAAAACCTCTT--ATCA-- 462
| ||.|.|| || ||.|||||| .| ||||
BL00550___ytc 429 AAGCAGCGAAGGGTG--GATCAATCTGCTCGAAAAA----ATGAATCAGG 472
BSNT_04305___ 463 --ATTGAAGCGGACGGAAGCCAATTTAAAACAGCTGACACAACAAGAGAT 510
||||.||||| |.|||.||.|.||.||.||..|..|.|||
BL00550___ytc 473 CCATTGCAGCGG---------ATTTTCAAGCGGCGGATACCTCTCGCGAT 513
BSNT_04305___ 511 GATATGGCTTTCTTATCTTATACATCCGGGACAACAGGTCAGCCGAAAGG 560
||.||.||.||.||||||||.||||||||.||.||.||||||||.|||||
BL00550___ytc 514 GACATCGCATTTTTATCTTACACATCCGGCACGACCGGTCAGCCAAAAGG 563
BSNT_04305___ 561 TGTTGTACATACACATGGATGGGCATTTGCTCATTTAAAAACTTCTGCCG 610
.||||||||||||||.||.|||||.|.||||||.||||.|||..|.||..
BL00550___ytc 564 GGTTGTACATACACACGGCTGGGCTTATGCTCACTTAAGAACGACAGCTT 613
BSNT_04305___ 611 GCGCTTGGCTTGATATTTCTGAAAAGGATATCGTCTGGGCAACTGCTGCC 660
.|||.||||||||.|||||.|||..||||.||||||||||.||.||.|..
BL00550___ytc 614 CCGCATGGCTTGACATTTCGGAAGGGGATCTCGTCTGGGCGACAGCAGGG 663
BSNT_04305___ 661 CCTGGCTGGCAAAAGTGGGTATGGAGTCCGTTTTTAGCGGTGCTTGGCAG 710
||.|||||||||||.|||||||||||.|||||||||||.|||||.||.||
BL00550___ytc 664 CCGGGCTGGCAAAAATGGGTATGGAGCCCGTTTTTAGCAGTGCTCGGTAG 713
BSNT_04305___ 711 CGGAGCAACCGGTTTTGTGTACCACGGCAGATTCAAAGCAGAAAAATATC 760
|||.||||||||.|||.|.||.||.||.|.|||||...|.||||..|||.
BL00550___ytc 714 CGGTGCAACCGGCTTTATCTATCATGGAAAATTCACGCCGGAAACGTATT 763
BSNT_04305___ 761 TAGAGCTTTTAAATCGCTACAAAATCAATGTTTTCTGCTGCACGCCTACA 810
|...|||..|..|.|||.|..||.|||||||..|.|||||.|||||.|||
BL00550___ytc 764 TGCGGCTGATTGAGCGCCATCAAGTCAATGTGCTGTGCTGTACGCCGACA 813
BSNT_04305___ 811 GAATACCGCTTAATGGCGAAGGTTGAAGGCTTGGACCGTTTTGATCTTTC 860
||.|||||.||.||||||||.||..|.|..|||..|||.|||||.||.||
BL00550___ytc 814 GAGTACCGGTTCATGGCGAAAGTCAATGATTTGTCCCGATTTGACCTGTC 863
BSNT_04305___ 861 TGCCCTGCACAGCGCTGTTTCCGCAGGTGAGCCGCTCAACCGTGAAGTCA 910
|.|.|||||||||||||||||.||.||.||||||.|.|||.|.|||||||
BL00550___ytc 864 TTCTCTGCACAGCGCTGTTTCGGCCGGAGAGCCGTTGAACAGGGAAGTCA 913
BSNT_04305___ 911 TTGATGTTTTCCAAAAGCACTTTGGCATTAAGGTACGGGACGGATATGGC 960
|.|||...||..|||||||.|||...|||...||.|||||||||||.||.
BL00550___ytc 914 TCGATACATTTAAAAAGCATTTTCATATTGCTGTGCGGGACGGATACGGA 963
BSNT_04305___ 961 CAAACAGAAAGCACGCTTTTGGTTGGTGTTTTGAAAGATACGCCTATTAA 1010
|||||.||.||||||||.|||||.||..||||.||||.||.|...||.||
BL00550___ytc 964 CAAACGGAGAGCACGCTGTTGGTGGGGATTTTAAAAGGTATGAAAATCAA 1013
BSNT_04305___ 1011 ACCGGGAAGCATGGGAAAACCGACACCGGGAAATCAGGTGGAGATCATAA 1060
.||.||||||||||||||||||||.||.|||||...|||.||.||.||
BL00550___ytc 1014 GCCTGGAAGCATGGGAAAACCGACGCCTGGAAACTTGGTTGATATTAT-- 1061
BSNT_04305___ 1061 ATGAAGACGGTGAAATCTGCAAA----------CCTGGTGAGGTTGGCGA 1100
.||||| ||| ||.||| ||.||.||....|||||
BL00550___ytc 1062 ----TGACGG-GAA---TGGAAAGAGCTGTCCCCCGGGCGAAACAGGCGA 1103
BSNT_04305___ 1101 TATCGCTGTTCACCTCAGTACGCCTGCGCTCTTTAAAGAGTATTTTAAAG 1150
|||.||.||||||.|.||.|||||.||.||.||||||||.||||..||||
BL00550___ytc 1104 TATTGCCGTTCACTTAAGCACGCCGGCTCTTTTTAAAGAATATTACAAAG 1153
BSNT_04305___ 1151 ATCCGGAAAGAATGAAAAC----ACAAATTCGCGGCGATTATTTCCTAAC 1196
||| |||||.|||..| |||||...|.||.|||||.||..||||
BL00550___ytc 1154 ATC----AAGAACGAACGCTCCGACAAAGAAGAGGGGATTACTTTATAAC 1199
BSNT_04305___ 1197 GGGAGACAGAGCAAGAAAAGATGAGGAAGGTTACTTCTGGTTTGAAAGCC 1246
.||.||.|..||..||||.|||||.||.||.||.||.|||||||||||||
BL00550___ytc 1200 AGGGGATAAGGCGCGAAAGGATGAAGACGGCTATTTTTGGTTTGAAAGCC 1249
BSNT_04305___ 1247 GAAATGACGATATTATTATCAGCTCCGGCTATACGATCGGGCCTTTCGAG 1296
|.|||||||||.|.||.||||||||.||.|||||.|||||.||.||.||.
BL00550___ytc 1250 GCAATGACGATGTGATCATCAGCTCAGGATATACAATCGGCCCGTTTGAA 1299
BSNT_04305___ 1297 GTGGAAGACGCGCTTGTTAAGCACCCAGAAGTAAAAGAATGTGCTGTTGT 1346
||.|||||.|||||..|.|||||.||.||.||.|||||||||||||||||
BL00550___ytc 1300 GTTGAAGATGCGCTGATCAAGCATCCTGAGGTCAAAGAATGTGCTGTTGT 1349
BSNT_04305___ 1347 CGCAAGCCCTGATGAAATCAGAGGCTCCATCGTAAAGGCATATGTTGTCC 1396
.||||||||||||||||||||.||.||.|||||.||.|||||.||||||.
BL00550___ytc 1350 GGCAAGCCCTGATGAAATCAGGGGATCGATCGTGAAAGCATACGTTGTCT 1399
BSNT_04305___ 1397 TGCAAA------ATCATGAAAAACGCAGTGATGA--GCTTGTCAA---AA 1435
| ||| ||| .|||.|..|||| .|.||.||| ||
BL00550___ytc 1400 T--AAAGGACCCATC-------CCGCGGAAATGAACACCTGACAAAGGAA 1440
BSNT_04305___ 1436 TGCTGCAAAACCATGTGAAGACGATTACCGCTCCATACAAATATCCTAGA 1485
| |.|||.|||||||.||..|.||.||.||.||.||.|||||.||..|.
BL00550___ytc 1441 T--TACAAGACCATGTAAAAGCCATGACGGCCCCTTATAAATACCCCCGG 1488
BSNT_04305___ 1486 GAAATTGAATTTGTGGAAAGCCTGCCGAAAACGGCTTCTGCAAAAATCAG 1535
||.||.|||||..|.|||...||||||||||||.||||.||.|||||||.
BL00550___ytc 1489 GAGATAGAATTCATCGAAGAACTGCCGAAAACGCCTTCGGCGAAAATCAA 1538
BSNT_04305___ 1536 ACGAGTGGAATTAAGAAAACGTGAAGAACAGCTC--------AAAGC-CA 1576
.||..|.|||.|||||.||||.|| ||..||.| ||||| .|
BL00550___ytc 1539 GCGCTTTGAACTAAGACAACGGGA--AATCGCACTTAAAACGAAAGCTGA 1586
BSNT_04305___ 1577 ATAAAAAGGCGTAA 1590
||||
BL00550___ytc 1587 ATAA---------- 1590
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