Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04305 and BL00550

See Amino acid alignment / Visit BSNT_04305 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:26
# Commandline: needle
#    -asequence dna-align/BSNT_04305___ytcI.1.5803.seq
#    -bsequence dna-align/BL00550___ytcI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04305___ytcI-BL00550___ytcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04305___ytcI-BL00550___ytcI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04305___ytcI
# 2: BL00550___ytcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1664
# Identity:    1139/1664 (68.4%)
# Similarity:  1139/1664 (68.4%)
# Gaps:         148/1664 ( 8.9%)
# Score: 3806.0
# 
#
#=======================================

BSNT_04305___      1 GTGTTAAAACGTGAAGATTTAATTGCCCCTATGCAATATAATTTAGTGAA     50
                        ||.|.|.|.||||||||.|||||.||...|.|.||||||...||..|
BL00550___ytc      1 ---TTGAGAAGAGAAGATTTGATTGCGCCGGAGAAGTATAATGCGGTTGA     47

BSNT_04305___     51 TGAAATGGAAAAGTTCA----GTGCCGCTGGACAAAAAACCGCTCTTCTG     96
                     ||||||.|||||.||.|    .|.||||    .|.||.|||||..|..|.
BL00550___ytc     48 TGAAATTGAAAAATTTAAATCTTCCCGC----GATAAGACCGCATTGATC     93

BSNT_04305___     97 TGGGAGGACGAGTCGGGTAAGCAAGAATCTTGGTCGTATGAAAAGCTGAT    146
                     |||||.||.||.||.||....||||..||.|||||.||||||||..||||
BL00550___ytc     94 TGGGAAGATGAATCAGGGCGTCAAGTGTCATGGTCCTATGAAAAATTGAT    143

BSNT_04305___    147 GGAAGAAACAAATAAAATCGG-AGCGGCCTTAGCTGATCTTGGATTTAAA    195
                     .|||.|..|..|.|||||||| |||....|.|.|.|.|| ||||.|.|||
BL00550___ytc    144 TGAAAAGGCTTACAAAATCGGCAGCATATTGACCCGTTC-TGGACTGAAA    192

BSNT_04305___    196 AAGGGAGACAAGCTGATTGTAATGGTTCCGCGGGTGCTTGAAGCCTATGC    245
                     ||.||.||||||||.||.||.|||.|.||||||.|.|..|||.|.|||||
BL00550___ytc    193 AAAGGTGACAAGCTTATCGTGATGATGCCGCGGATACCGGAAACGTATGC    242

BSNT_04305___    246 TGTTTATTTGGCTATCCTGAAATCAGGAATGGTTGTCATTCCGTGCTCCG    295
                     .||.||..||||.||..|.|||.|.||||||||.|||||.||.||.||||
BL00550___ytc    243 CGTGTACATGGCCATTTTAAAAGCTGGAATGGTGGTCATCCCATGTTCCG    292

BSNT_04305___    296 AAATGCTTCGCGCGAAAGATCTT-GAATACCGGATTGAACATGCAGAGGT    344
                     ||||||||||.|||||||| ||| ||.|||.||||..|.|||||||..||
BL00550___ytc    293 AAATGCTTCGGGCGAAAGA-CTTGGATTACAGGATCAAGCATGCAGGCGT    341

BSNT_04305___    345 AAAAGGCGCTATCGTCTACTCAGAATTTATTGGCGCTTTCCGGGATGTCA    394
                     .|||||.||..||||.||.||||.||||.|||..|||||.|..|||||..
BL00550___ytc    342 CAAAGGAGCCGTCGTATATTCAGCATTTCTTGATGCTTTTCTAGATGTTC    391

BSNT_04305___    395 GTACGACTGACAAACTGATTA----CACTGTC--TATT-------GGTGA    431
                     ||       .||||      |    |||||||  ||||       ||.||
BL00550___ytc    392 GT-------TCAAA------AGAGGCACTGTCGTTATTTGCCGTCGGAGA    428

BSNT_04305___    432 A-------AATGATGCCGA--------CTGGAAAAACCTCTT--ATCA--    462
                     |       ||.|.||  ||        ||.||||||    .|  ||||  
BL00550___ytc    429 AAGCAGCGAAGGGTG--GATCAATCTGCTCGAAAAA----ATGAATCAGG    472

BSNT_04305___    463 --ATTGAAGCGGACGGAAGCCAATTTAAAACAGCTGACACAACAAGAGAT    510
                       ||||.|||||         |.|||.||.|.||.||.||..|..|.|||
BL00550___ytc    473 CCATTGCAGCGG---------ATTTTCAAGCGGCGGATACCTCTCGCGAT    513

BSNT_04305___    511 GATATGGCTTTCTTATCTTATACATCCGGGACAACAGGTCAGCCGAAAGG    560
                     ||.||.||.||.||||||||.||||||||.||.||.||||||||.|||||
BL00550___ytc    514 GACATCGCATTTTTATCTTACACATCCGGCACGACCGGTCAGCCAAAAGG    563

BSNT_04305___    561 TGTTGTACATACACATGGATGGGCATTTGCTCATTTAAAAACTTCTGCCG    610
                     .||||||||||||||.||.|||||.|.||||||.||||.|||..|.||..
BL00550___ytc    564 GGTTGTACATACACACGGCTGGGCTTATGCTCACTTAAGAACGACAGCTT    613

BSNT_04305___    611 GCGCTTGGCTTGATATTTCTGAAAAGGATATCGTCTGGGCAACTGCTGCC    660
                     .|||.||||||||.|||||.|||..||||.||||||||||.||.||.|..
BL00550___ytc    614 CCGCATGGCTTGACATTTCGGAAGGGGATCTCGTCTGGGCGACAGCAGGG    663

BSNT_04305___    661 CCTGGCTGGCAAAAGTGGGTATGGAGTCCGTTTTTAGCGGTGCTTGGCAG    710
                     ||.|||||||||||.|||||||||||.|||||||||||.|||||.||.||
BL00550___ytc    664 CCGGGCTGGCAAAAATGGGTATGGAGCCCGTTTTTAGCAGTGCTCGGTAG    713

BSNT_04305___    711 CGGAGCAACCGGTTTTGTGTACCACGGCAGATTCAAAGCAGAAAAATATC    760
                     |||.||||||||.|||.|.||.||.||.|.|||||...|.||||..|||.
BL00550___ytc    714 CGGTGCAACCGGCTTTATCTATCATGGAAAATTCACGCCGGAAACGTATT    763

BSNT_04305___    761 TAGAGCTTTTAAATCGCTACAAAATCAATGTTTTCTGCTGCACGCCTACA    810
                     |...|||..|..|.|||.|..||.|||||||..|.|||||.|||||.|||
BL00550___ytc    764 TGCGGCTGATTGAGCGCCATCAAGTCAATGTGCTGTGCTGTACGCCGACA    813

BSNT_04305___    811 GAATACCGCTTAATGGCGAAGGTTGAAGGCTTGGACCGTTTTGATCTTTC    860
                     ||.|||||.||.||||||||.||..|.|..|||..|||.|||||.||.||
BL00550___ytc    814 GAGTACCGGTTCATGGCGAAAGTCAATGATTTGTCCCGATTTGACCTGTC    863

BSNT_04305___    861 TGCCCTGCACAGCGCTGTTTCCGCAGGTGAGCCGCTCAACCGTGAAGTCA    910
                     |.|.|||||||||||||||||.||.||.||||||.|.|||.|.|||||||
BL00550___ytc    864 TTCTCTGCACAGCGCTGTTTCGGCCGGAGAGCCGTTGAACAGGGAAGTCA    913

BSNT_04305___    911 TTGATGTTTTCCAAAAGCACTTTGGCATTAAGGTACGGGACGGATATGGC    960
                     |.|||...||..|||||||.|||...|||...||.|||||||||||.||.
BL00550___ytc    914 TCGATACATTTAAAAAGCATTTTCATATTGCTGTGCGGGACGGATACGGA    963

BSNT_04305___    961 CAAACAGAAAGCACGCTTTTGGTTGGTGTTTTGAAAGATACGCCTATTAA   1010
                     |||||.||.||||||||.|||||.||..||||.||||.||.|...||.||
BL00550___ytc    964 CAAACGGAGAGCACGCTGTTGGTGGGGATTTTAAAAGGTATGAAAATCAA   1013

BSNT_04305___   1011 ACCGGGAAGCATGGGAAAACCGACACCGGGAAATCAGGTGGAGATCATAA   1060
                     .||.||||||||||||||||||||.||.|||||...|||.||.||.||  
BL00550___ytc   1014 GCCTGGAAGCATGGGAAAACCGACGCCTGGAAACTTGGTTGATATTAT--   1061

BSNT_04305___   1061 ATGAAGACGGTGAAATCTGCAAA----------CCTGGTGAGGTTGGCGA   1100
                         .||||| |||   ||.|||          ||.||.||....|||||
BL00550___ytc   1062 ----TGACGG-GAA---TGGAAAGAGCTGTCCCCCGGGCGAAACAGGCGA   1103

BSNT_04305___   1101 TATCGCTGTTCACCTCAGTACGCCTGCGCTCTTTAAAGAGTATTTTAAAG   1150
                     |||.||.||||||.|.||.|||||.||.||.||||||||.||||..||||
BL00550___ytc   1104 TATTGCCGTTCACTTAAGCACGCCGGCTCTTTTTAAAGAATATTACAAAG   1153

BSNT_04305___   1151 ATCCGGAAAGAATGAAAAC----ACAAATTCGCGGCGATTATTTCCTAAC   1196
                     |||    |||||.|||..|    |||||...|.||.|||||.||..||||
BL00550___ytc   1154 ATC----AAGAACGAACGCTCCGACAAAGAAGAGGGGATTACTTTATAAC   1199

BSNT_04305___   1197 GGGAGACAGAGCAAGAAAAGATGAGGAAGGTTACTTCTGGTTTGAAAGCC   1246
                     .||.||.|..||..||||.|||||.||.||.||.||.|||||||||||||
BL00550___ytc   1200 AGGGGATAAGGCGCGAAAGGATGAAGACGGCTATTTTTGGTTTGAAAGCC   1249

BSNT_04305___   1247 GAAATGACGATATTATTATCAGCTCCGGCTATACGATCGGGCCTTTCGAG   1296
                     |.|||||||||.|.||.||||||||.||.|||||.|||||.||.||.||.
BL00550___ytc   1250 GCAATGACGATGTGATCATCAGCTCAGGATATACAATCGGCCCGTTTGAA   1299

BSNT_04305___   1297 GTGGAAGACGCGCTTGTTAAGCACCCAGAAGTAAAAGAATGTGCTGTTGT   1346
                     ||.|||||.|||||..|.|||||.||.||.||.|||||||||||||||||
BL00550___ytc   1300 GTTGAAGATGCGCTGATCAAGCATCCTGAGGTCAAAGAATGTGCTGTTGT   1349

BSNT_04305___   1347 CGCAAGCCCTGATGAAATCAGAGGCTCCATCGTAAAGGCATATGTTGTCC   1396
                     .||||||||||||||||||||.||.||.|||||.||.|||||.||||||.
BL00550___ytc   1350 GGCAAGCCCTGATGAAATCAGGGGATCGATCGTGAAAGCATACGTTGTCT   1399

BSNT_04305___   1397 TGCAAA------ATCATGAAAAACGCAGTGATGA--GCTTGTCAA---AA   1435
                     |  |||      |||       .|||.|..||||  .|.||.|||   ||
BL00550___ytc   1400 T--AAAGGACCCATC-------CCGCGGAAATGAACACCTGACAAAGGAA   1440

BSNT_04305___   1436 TGCTGCAAAACCATGTGAAGACGATTACCGCTCCATACAAATATCCTAGA   1485
                     |  |.|||.|||||||.||..|.||.||.||.||.||.|||||.||..|.
BL00550___ytc   1441 T--TACAAGACCATGTAAAAGCCATGACGGCCCCTTATAAATACCCCCGG   1488

BSNT_04305___   1486 GAAATTGAATTTGTGGAAAGCCTGCCGAAAACGGCTTCTGCAAAAATCAG   1535
                     ||.||.|||||..|.|||...||||||||||||.||||.||.|||||||.
BL00550___ytc   1489 GAGATAGAATTCATCGAAGAACTGCCGAAAACGCCTTCGGCGAAAATCAA   1538

BSNT_04305___   1536 ACGAGTGGAATTAAGAAAACGTGAAGAACAGCTC--------AAAGC-CA   1576
                     .||..|.|||.|||||.||||.||  ||..||.|        ||||| .|
BL00550___ytc   1539 GCGCTTTGAACTAAGACAACGGGA--AATCGCACTTAAAACGAAAGCTGA   1586

BSNT_04305___   1577 ATAAAAAGGCGTAA   1590
                     ||||          
BL00550___ytc   1587 ATAA----------   1590


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