Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00076 and BL00530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:44
# Commandline: needle
# -asequence dna-align/BSNT_00076___rnmV.1.5803.seq
# -bsequence dna-align/BL00530___rnmV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00076___rnmV-BL00530___rnmV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00076___rnmV-BL00530___rnmV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00076___rnmV
# 2: BL00530___rnmV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 583
# Identity: 421/583 (72.2%)
# Similarity: 421/583 (72.2%)
# Gaps: 44/583 ( 7.5%)
# Score: 1459.0
#
#
#=======================================
BSNT_00076___ 1 ATGAAAATTAAAGAGATCATTGTGGTCGAGGGGCGTGACGATACGGCCCG 50
|||||.||||||||.|||||.||.|||||.||.|||||.||.| |||
BL00530___rnm 1 ATGAAGATTAAAGAAATCATCGTTGTCGAAGGCCGTGATGACA----CCG 46
BSNT_00076___ 51 C----ATCAAATTGGCTGTTGATGCAGACACAATTGAAACAAATGGTTCA 96
| |||||||.|||||||||||||||.||.||.|||||.||.||.||.
BL00530___rnm 47 CTAAAATCAAATCGGCTGTTGATGCAGATACGATCGAAACGAACGGATCT 96
BSNT_00076___ 97 GCCATCGATGATCATGTGATTGACCAA----ATCCGTTTGGCCCAGAAGA 142
|||||.|..||..|.||.|| ||| ||.||..|.||||||.|.|
BL00530___rnm 97 GCCATAGGGGAAGACGTCAT----CAAACGGATTCGGCTCGCCCAGGAAA 142
BSNT_00076___ 143 CGAGAGGCGTCATTATTTTAACGGATCCGGACTTTCCGGGAGAGAAGATT 192
||.|.||.||.|||||||||||.|||||.||.||.|||||.||.||.||.
BL00530___rnm 143 CGCGCGGGGTTATTATTTTAACCGATCCCGATTTCCCGGGGGAAAAAATC 192
BSNT_00076___ 193 CGCAAAACCATCTCAGAGGCTGTACCCGGCTGTAAGCATGCATTTTTGCC 242
.|.|||||.||..||||....||.||||||||.|||||||||||||||||
BL00530___rnm 193 AGAAAAACGATTGCAGAAAAGGTCCCCGGCTGCAAGCATGCATTTTTGCC 242
BSNT_00076___ 243 AAAACATCTTGCCAAA-CCTAAAAACAAGCGGGGAATTGGTGTGGAGCAT 291
.||.||| |||.|||| ||||||||.||.||.|||||.|||||.||.||.
BL00530___rnm 243 CAAGCAT-TTGGCAAAGCCTAAAAATAAACGCGGAATCGGTGTCGAACAC 291
BSNT_00076___ 292 GCATCGGTTGAAAGC-ATTAGGGCATGTTTAGAAAAT----GTGCATGAG 336
||.|||.||| |||| ||..|.|.|||.|| ||| ||.||.|||
BL00530___rnm 292 GCTTCGCTTG-AAGCGATCCGCGAATGCTT----AATGACCGTTCAGGAG 336
BSNT_00076___ 337 GAGATGGAAG---CGCAGCCGAGTGACATTTCAGCTGAGGATTTGATTCA 383
||.||||||| ||.|.|| |||.|||...||...||||||.||..|
BL00530___rnm 337 GAAATGGAAGCGACGGAACC---TGAGATTGAGGCCCGGGATTTAATCGA 383
BSNT_00076___ 384 TGCCGGACTAATAGGCGGGCATGC-GGC----CAAATGCCGCCGGGAACG 428
.|||||.||.||.|| .|||..|| ||| |||| |.|||||.||
BL00530___rnm 384 AGCCGGCCTGATCGG-AGGCCCGCTGGCAAAACAAA----GGCGGGAGCG 428
BSNT_00076___ 429 ACTGGGTGATCTGTTGAAAATCGGCTATACAAATGGCAAACAGCTTCAAA 478
.||.||.||..|.|||||.|||||||||||||||||.|||||||||||||
BL00530___rnm 429 GCTCGGCGAAATATTGAATATCGGCTATACAAATGGGAAACAGCTTCAAA 478
BSNT_00076___ 479 AACGGCTGCAAATGTTTCAAATTAAAAAAAGTGATTTTATGAGTGCGCTC 528
|.|||||||||||||||||.||.|||||.|||||||.|.|.||.||.||.
BL00530___rnm 479 AGCGGCTGCAAATGTTTCAGATCAAAAAGAGTGATTATTTAAGCGCACTG 528
BSNT_00076___ 529 GATACCGTTATGCGGGAGGAACAGAATGAATAA 561
|||.|.||..|||||||||||.|..||||||||
BL00530___rnm 529 GATGCTGTGCTGCGGGAGGAAGAACATGAATAA 561
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