Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00076 and BL00530

See Amino acid alignment / Visit BSNT_00076 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:44
# Commandline: needle
#    -asequence dna-align/BSNT_00076___rnmV.1.5803.seq
#    -bsequence dna-align/BL00530___rnmV.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00076___rnmV-BL00530___rnmV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00076___rnmV-BL00530___rnmV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00076___rnmV
# 2: BL00530___rnmV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 583
# Identity:     421/583 (72.2%)
# Similarity:   421/583 (72.2%)
# Gaps:          44/583 ( 7.5%)
# Score: 1459.0
# 
#
#=======================================

BSNT_00076___      1 ATGAAAATTAAAGAGATCATTGTGGTCGAGGGGCGTGACGATACGGCCCG     50
                     |||||.||||||||.|||||.||.|||||.||.|||||.||.|    |||
BL00530___rnm      1 ATGAAGATTAAAGAAATCATCGTTGTCGAAGGCCGTGATGACA----CCG     46

BSNT_00076___     51 C----ATCAAATTGGCTGTTGATGCAGACACAATTGAAACAAATGGTTCA     96
                     |    |||||||.|||||||||||||||.||.||.|||||.||.||.||.
BL00530___rnm     47 CTAAAATCAAATCGGCTGTTGATGCAGATACGATCGAAACGAACGGATCT     96

BSNT_00076___     97 GCCATCGATGATCATGTGATTGACCAA----ATCCGTTTGGCCCAGAAGA    142
                     |||||.|..||..|.||.||    |||    ||.||..|.||||||.|.|
BL00530___rnm     97 GCCATAGGGGAAGACGTCAT----CAAACGGATTCGGCTCGCCCAGGAAA    142

BSNT_00076___    143 CGAGAGGCGTCATTATTTTAACGGATCCGGACTTTCCGGGAGAGAAGATT    192
                     ||.|.||.||.|||||||||||.|||||.||.||.|||||.||.||.||.
BL00530___rnm    143 CGCGCGGGGTTATTATTTTAACCGATCCCGATTTCCCGGGGGAAAAAATC    192

BSNT_00076___    193 CGCAAAACCATCTCAGAGGCTGTACCCGGCTGTAAGCATGCATTTTTGCC    242
                     .|.|||||.||..||||....||.||||||||.|||||||||||||||||
BL00530___rnm    193 AGAAAAACGATTGCAGAAAAGGTCCCCGGCTGCAAGCATGCATTTTTGCC    242

BSNT_00076___    243 AAAACATCTTGCCAAA-CCTAAAAACAAGCGGGGAATTGGTGTGGAGCAT    291
                     .||.||| |||.|||| ||||||||.||.||.|||||.|||||.||.||.
BL00530___rnm    243 CAAGCAT-TTGGCAAAGCCTAAAAATAAACGCGGAATCGGTGTCGAACAC    291

BSNT_00076___    292 GCATCGGTTGAAAGC-ATTAGGGCATGTTTAGAAAAT----GTGCATGAG    336
                     ||.|||.||| |||| ||..|.|.|||.||    |||    ||.||.|||
BL00530___rnm    292 GCTTCGCTTG-AAGCGATCCGCGAATGCTT----AATGACCGTTCAGGAG    336

BSNT_00076___    337 GAGATGGAAG---CGCAGCCGAGTGACATTTCAGCTGAGGATTTGATTCA    383
                     ||.|||||||   ||.|.||   |||.|||...||...||||||.||..|
BL00530___rnm    337 GAAATGGAAGCGACGGAACC---TGAGATTGAGGCCCGGGATTTAATCGA    383

BSNT_00076___    384 TGCCGGACTAATAGGCGGGCATGC-GGC----CAAATGCCGCCGGGAACG    428
                     .|||||.||.||.|| .|||..|| |||    ||||    |.|||||.||
BL00530___rnm    384 AGCCGGCCTGATCGG-AGGCCCGCTGGCAAAACAAA----GGCGGGAGCG    428

BSNT_00076___    429 ACTGGGTGATCTGTTGAAAATCGGCTATACAAATGGCAAACAGCTTCAAA    478
                     .||.||.||..|.|||||.|||||||||||||||||.|||||||||||||
BL00530___rnm    429 GCTCGGCGAAATATTGAATATCGGCTATACAAATGGGAAACAGCTTCAAA    478

BSNT_00076___    479 AACGGCTGCAAATGTTTCAAATTAAAAAAAGTGATTTTATGAGTGCGCTC    528
                     |.|||||||||||||||||.||.|||||.|||||||.|.|.||.||.||.
BL00530___rnm    479 AGCGGCTGCAAATGTTTCAGATCAAAAAGAGTGATTATTTAAGCGCACTG    528

BSNT_00076___    529 GATACCGTTATGCGGGAGGAACAGAATGAATAA    561
                     |||.|.||..|||||||||||.|..||||||||
BL00530___rnm    529 GATGCTGTGCTGCGGGAGGAAGAACATGAATAA    561


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.