Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00080 and BL00527

See Amino acid alignment / Visit BSNT_00080 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:44
# Commandline: needle
#    -asequence dna-align/BSNT_00080___veg.1.5803.seq
#    -bsequence dna-align/BL00527___veg.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00080___veg-BL00527___veg.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00080___veg-BL00527___veg.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00080___veg
# 2: BL00527___veg
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 264
# Identity:     236/264 (89.4%)
# Similarity:   236/264 (89.4%)
# Gaps:           6/264 ( 2.3%)
# Score: 1070.0
# 
#
#=======================================

BSNT_00080___      1 ATGGCGAAGACGTTGTCCGATATTAAAAGATCGCTTGATGGGAATTTAGG     50
                     ||||||||.||||||||||||||||||||||||||||||||..||||.||
BL00527___veg      1 ATGGCGAAAACGTTGTCCGATATTAAAAGATCGCTTGATGGACATTTGGG     50

BSNT_00080___     51 TAAAAGGCTGACGTTAAAAGCAAACGGTGGCCGCCGAAAAACGATTGAGC    100
                     .|||||||||||||||||||||||||||||||||||||||||||||||||
BL00527___veg     51 AAAAAGGCTGACGTTAAAAGCAAACGGTGGCCGCCGAAAAACGATTGAGC    100

BSNT_00080___    101 GTTCGGGCATTTTAGCTGAGACGTACCCTTCTGTTTTTGTGATACAACTA    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BL00527___veg    101 GTTCGGGCATTTTAGCTGAGACGTACCCTTCTGTTTTTGTGATACAACTA    150

BSNT_00080___    151 GATCAAGACGAGAACTCGTTTGAAAGAGTTTCATACAGTTATGCTGATAT    200
                     ||.|||||||||||.|||||||||||||||||||||||||||||.|||||
BL00527___veg    151 GACCAAGACGAGAATTCGTTTGAAAGAGTTTCATACAGTTATGCGGATAT    200

BSNT_00080___    201 TTTGACTGAGACTGTTGAGCTGACATTT---AATGATGACGCCGCAAGCT    247
                     |.|.||||||||.|||||..|||..|||   .|||||.|..||   ||||
BL00527___veg    201 TCTTACTGAGACGGTTGAATTGAGGTTTTCCGATGATAAAACC---AGCT    247

BSNT_00080___    248 CAGTGGCATTTTAA    261
                     ||||.||..|||||
BL00527___veg    248 CAGTAGCCCTTTAA    261


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