Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00090 and BL00518
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:45
# Commandline: needle
# -asequence dna-align/BSNT_00090___ctc.1.5803.seq
# -bsequence dna-align/BL00518___ctc.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00090___ctc-BL00518___ctc.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00090___ctc-BL00518___ctc.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00090___ctc
# 2: BL00518___ctc
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 666
# Identity: 422/666 (63.4%)
# Similarity: 422/666 (63.4%)
# Gaps: 90/666 (13.5%)
# Score: 1287.5
#
#
#=======================================
BSNT_00090___ 1 ATGGCAACTTTAACGGCAAAAGAAAGAACGGACTTTACTCGTTCGTCT-- 48
|||||||.|||||..||..|||||||||||||.|..|..||.||.|||
BL00518___ctc 1 ATGGCAATTTTAAAAGCGGAAGAAAGAACGGATTCCAGACGGTCTTCTTT 50
BSNT_00090___ 49 -------CTTCGGAATATCCGTACTTCAGGACATGTTCCAGGTATCATAT 91
.|||||.| |||| ||..||||.||.|||.||||.|
BL00518___ctc 51 AAGAAGAATTCGGCA-ATCC--------GGGTATGTGCCGGGTGTCATTT 91
BSNT_00090___ 92 ATGG--GAAGGATACGGGTAACAAACCTGTGTCATTAGACAGTGTGGAGC 139
|.|| ||| ||..||..||||||.|.||..|.|||||||||.|.||||
BL00518___ctc 92 ACGGAAGAA--ATCTGGAGAACAAATCCGTTGCGTTAGACAGTATCGAGC 139
BSNT_00090___ 140 TCATCAAAA-------CGCTGAGGGACGAAGGCAAAAATGCAGTCATTAC 182
|..|.|||| ||||||| |||||||||.|..|.||.|
BL00518___ctc 140 TTTTAAAAATCTTGCGCGCTGAG-------GGCAAAAATACGATTATCA- 181
BSNT_00090___ 183 GCTT-GAGGTCAGCGGAGAAAAACACTCAGTCATGGTAACAGACCTGCAG 231
.||| ||..|.|.|||.||..|||||||.||.|||||.||.||.||||||
BL00518___ctc 182 ACTTGGATATAAACGGTGACCAACACTCTGTTATGGTGACTGAGCTGCAG 231
BSNT_00090___ 232 ACGGACCCGCTGAAAAATGAAATCACTCATGCTGATTTTCAAGTAGTTAA 281
|||||.|||.|.|||.||..||||...|||||.||||||.||||.|||.|
BL00518___ctc 232 ACGGATCCGTTAAAAGATTCAATCGTACATGCCGATTTTAAAGTGGTTGA 281
BSNT_00090___ 282 TATGAGTGAGGACATTGAAGTGGAAGTTCCGATTCATCTGACCGGAGAAG 331
||||...|.|||.||.||.|.|...|||||..|..|.||.||.||.||||
BL00518___ctc 282 TATGGAAGCGGAAATGGAGGCGACGGTTCCTGTAAACCTTACGGGTGAAG 331
BSNT_00090___ 332 CCATTGGAG----TGAAAAACGGAGGCGTACTGCAGCAGCCGTTATATGC 377
| .||| |.|||.|.||.||.||.||.|||||||||.|.||.|.
BL00518___ctc 332 C----AGAGGGCATCAAACAGGGCGGTGTTCTTCAGCAGCCGCTTTACGA 377
BSNT_00090___ 378 ACTTACTGTAAAGGCCAAGCCAAAAGCCATTCCGCAAACGATTGAGGCTG 427
.||..||||.|..||.|||||.||...|||||||||.|||||.||||.||
BL00518___ctc 378 GCTGTCTGTCACAGCAAAGCCGAAGAACATTCCGCAGACGATCGAGGTTG 427
BSNT_00090___ 428 ATATTTCAAGCCTCGATGTAAATGAAGTACTGACGATTGCGGATTTGCCT 477
|||||||.||.|||||.||.|||||.||.||.||..|.|..|||.|.||
BL00518___ctc 428 ATATTTCCAGTCTCGAAGTCAATGATGTTCTAACCGTCGGCGATATTCC- 476
BSNT_00090___ 478 GCTGGC----GGTGACTACTCCTTTAATCATGAGTCAGATGAGGTTGTGG 523
|.| ||.||.||.||.|..||.||||||.|.|||||.|||||.|
BL00518___ctc 477 ---GACCAAAGGCGATTATTCATACAACCATGAGCCTGATGAAGTTGTTG 523
BSNT_00090___ 524 CTTCAATCCTTCCTCCGCAGCAGCAGGAAGCAGCTGAGGTCGATGAAGAG 573
|.||.||.||||||||.||..|||||||||.|.| .||||..
BL00518___ctc 524 CATCCATTCTTCCTCCTCAAAAGCAGGAAGAAAC---------AGAAGCC 564
BSNT_00090___ 574 GAATCTGCCGATGCTCA-----------------------GC-CAGAAGG 599
|||||.|| |||||| || |.||||.
BL00518___ctc 565 GAATCAGC---TGCTCAAGACGTTGAGGAACCAGAAAAAGGCACTGAAGA 611
BSNT_00090___ 600 TGAAAACGAACAATAA 615
.|||||.|||.|||||
BL00518___ctc 612 GGAAAAAGAAGAATAA 627
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