Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00115 and BL00506
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:47
# Commandline: needle
# -asequence dna-align/BSNT_00115___spoIIE.1.5803.seq
# -bsequence dna-align/BL00506___spoIIE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00115___spoIIE-BL00506___spoIIE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00115___spoIIE-BL00506___spoIIE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00115___spoIIE
# 2: BL00506___spoIIE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2535
# Identity: 1879/2535 (74.1%)
# Similarity: 1879/2535 (74.1%)
# Gaps: 87/2535 ( 3.4%)
# Score: 6785.5
#
#
#=======================================
BSNT_00115___ 1 ATGAGAGGAATGGAAAAAGCAGAAAGAAGAGTGAACGGGCCAATGGCGGG 50
|||||||||||.|||||||||||||||.|.|||||.||.||
BL00506___spo 1 ---------ATGGAAAAAGCGGAAAGAAGAGTGAACAGCCCAATAGCTGG 41
BSNT_00115___ 51 ACAAGCTTTGGAAAAACTCCAATCGTTTTTTAACAGGGGCACGAAGCTGG 100
||..|||.|..|||||.|..|.||.|..|||..|||....||||||||..
BL00506___spo 42 ACCTGCTGTTCAAAAATTGTATTCATGGTTTGGCAGCATGACGAAGCTTA 91
BSNT_00115___ 101 TGACTCATCATTTGCATTCACTGTTTTTCTATAAAGGATTCATTTATGTT 150
|||..||.|||||..||||.||.|||||.||||||||..|.||.|||.|.
BL00506___spo 92 TGATGCAGCATTTATATTCCCTCTTTTTTTATAAAGGGCTGATCTATATG 141
BSNT_00115___ 151 GTCATCGGATTTTTGCTTGGACGGGCTTTCATATTATCCGAGGTGCTTCC 200
||||||||.|||||..|.|||||.||.|||||..|.||.|||||..||||
BL00506___spo 142 GTCATCGGTTTTTTATTGGGACGAGCCTTCATTCTGTCAGAGGTCATTCC 191
BSNT_00115___ 201 TTTCGCACTTCCTTTCTTTGGAGCGATGCTTCTAATCAGAAGAGACAAAG 250
.||.||.|||||.||.||.||||||||||||.||||||.||.|||.||||
BL00506___spo 192 CTTTGCTCTTCCATTTTTCGGAGCGATGCTTTTAATCAAAAAAGATAAAG 241
BSNT_00115___ 251 CGTT--TT--ATGCGGTTTTGGCTGTGCTTGCAGGTGCGCTGACCATATC 296
|.|| || |||| .||||..|.|||||.||.||.||||.||||||
BL00506___spo 242 CTTTCCTTGCATGC----CTGGCGCTTCTTGCCGGAGCTCTGAGCATATC 287
BSNT_00115___ 297 TCCAAAGCACTCATTGCTCATACTGGCGGCATTGCTGGCATTCTTCG-TA 345
.||..||||.||..||.||.|.||.|||||..||.|.||||| |.|| ||
BL00506___spo 288 GCCTCAGCATTCGCTGTTCGTGCTTGCGGCTCTGTTTGCATT-TGCGATA 336
BSNT_00115___ 346 TTTTCTAAAGTGGC-TGCCTTCATTACCGACGATCGTGTTAAAGCGCTCC 394
|.|||.|||.||.| |.|||| ||||...|.||.|||||.|.|.||||.|
BL00506___spo 337 TGTTCAAAAATGACGTCCCTT-ATTATAAAAGACCGTGTCAGAACGCTGC 385
BSNT_00115___ 395 CGATTGTCGTGTTCTTCTCCATGGCTGCAGCAAGAGCCGGGTTTGTTTAT 444
|..|.|||||.||.||..|.|||||||...|||||..|||.||.||.|||
BL00506___spo 386 CTGTCGTCGTCTTTTTGGCGATGGCTGTGACAAGATGCGGATTCGTATAT 435
BSNT_00115___ 445 GCCCAAAATGG--CGTATTTACAACCTATGATTATGTAATGGCTATCGTT 492
|||.||.|.|| || .||.||...|||.|.|||.|.||||||.|||||
BL00506___spo 436 GCCGAATACGGAACG--GTTTCAGGTTATCACTATATTATGGCTTTCGTT 483
BSNT_00115___ 493 GAGGCTGGACTATCGTTTATCTTAACACTGATTTTCCTTCAGAGCCTTCC 542
||.||.|||.|||||||||||.|.|||.|||||||.||.||.|||||.||
BL00506___spo 484 GAAGCCGGATTATCGTTTATCCTCACATTGATTTTTCTGCAAAGCCTGCC 533
BSNT_00115___ 543 GATTTTTACTGTGAAAAAA----GTGAAACAATCATTAAAAATAGAGGAA 588
||||.|.|| |..||| |.||||||.||..|.|||||.||.||.
BL00506___spo 534 GATTGTCAC----ATCAAAGCGGGCGAAACAGTCGCTGAAAATTGAAGAG 579
BSNT_00115___ 589 ATCATTTGCTTTATGATTCTTATTGCCTCTGTTTTAACGGGGCTGGCTGG 638
||||||||.|||||||||.|.||.||.||.|||.|.|||||..||.|.||
BL00506___spo 580 ATCATTTGTTTTATGATTTTAATCGCTTCCGTTCTCACGGGCTTGACAGG 629
BSNT_00115___ 639 CTTGTCCTACCAAGGGATGCAGGCAGAACATATATTGGCTCGTTATGTTG 688
|.|.||.|..|||||.||||||||.||||..||||||||.||||||||.|
BL00506___spo 630 CGTTTCATTTCAAGGCATGCAGGCTGAACTGATATTGGCCCGTTATGTCG 679
BSNT_00115___ 689 TGTTGAGTTTTTCCTTTATTGGCGGAGCAAGCATCGGCTGTACGGTTGGG 738
||.|...|||..|.||.||.||.||.|||||||||||||||||.||.|||
BL00506___spo 680 TGCTCGCTTTCGCGTTCATCGGAGGCGCAAGCATCGGCTGTACAGTCGGG 729
BSNT_00115___ 739 GTTGTGACCGGCCTGATTCTTGGCTTGGCGAATATCGGAAACCTATATCA 788
|||||||||||.||||||||..||.|..|.||.|||||.||..|||||||
BL00506___spo 730 GTTGTGACCGGGCTGATTCTCAGCCTCTCAAACATCGGCAATTTATATCA 779
BSNT_00115___ 789 AATGAGTCTGCTTGCTTTTTCCGGTTTATTGGGCGGTTTGCTGAAGGAAG 838
.|||||.|||||.|||||.||.||..|..|.|||||||||||.||.|||
BL00506___spo 780 GATGAGCCTGCTGGCTTTCTCAGGCCTTCTCGGCGGTTTGCTAAAAGAA- 828
BSNT_00115___ 839 GGAAAAAAG--CGGGTGCAGCAATTGGTTTGATCG-TTGGATCACTTCTT 885
||||||||| | ||.|||||..|.||.|| ||.| |||||||.||..|.
BL00506___spo 829 GGAAAAAAGTTC-GGCGCAGCGGTCGGCTT-ATTGATTGGATCTCTATTG 876
BSNT_00115___ 886 ATATCTTTATATGGTGAAGGCTCTGCCGGTCTGA-----TGACAACGCTC 930
||.|||.|.||.||.|||||.|| |.|||| ||.|.|||||.
BL00506___spo 877 ATTTCTCTGTACGGAGAAGGTTC-----GGCTGAATTAGTGCCGACGCTT 921
BSNT_00115___ 931 TATGAGTCATTAATCGCAGTCGGCCTGTT--TTTGCTCACACCTCAATCT 978
|||||.||..|.||.|||.|||||||||| ||| |.||.|||||.||.
BL00506___spo 922 TATGAATCTCTGATTGCAATCGGCCTGTTCCTTT--TAACCCCTCAGTCG 969
BSNT_00115___ 979 ATTACGAGGAAAGTGGCGAGATATATTCCGGGAACTGTC-GAGCATCTTC 1027
|||||||..||||||||.|..|||||.||.||||| |.| |||||....|
BL00506___spo 970 ATTACGAAAAAAGTGGCCAAGTATATACCTGGAAC-GACTGAGCACGCCC 1018
BSNT_00115___ 1028 AAGAGCAACAGCAATACGCTAGAAAAATCCGTGATGTCACTGCTCAGAAG 1077
|.||.||.|||||.||.||.||.||||||||.||||||||.||.||.||.
BL00506___spo 1019 AGGAACAGCAGCAGTATGCAAGGAAAATCCGCGATGTCACCGCCCAAAAA 1068
BSNT_00115___ 1078 GTAGACCAATTCTCCAATGTATTTCACGCGCTGTCTGAAAGCTTTGCAAC 1127
||.||.||.||.||.||.||.||||||||..|.||.||||||||.||.||
BL00506___spo 1069 GTCGATCAGTTTTCGAACGTTTTTCACGCTTTATCCGAAAGCTTCGCTAC 1118
BSNT_00115___ 1128 CTTTTATCA---AGCATCAGAC-------GAACAGACAGATGACAGCGAA 1167
||||||||| |||..|.||| |||.|||.|.| ||.
BL00506___spo 1119 CTTTTATCATTCAGCTCCGGACGATGAAGGAAAAGAAAAA-------GAG 1161
BSNT_00115___ 1168 GTTGATCTGTTCTTAAGCAAAATCACGGAGCATTCCTGCCAGACGTGCTA 1217
.|.||||||||.||.||||...|.||.||.||||||||.|||.|.|||||
BL00506___spo 1162 ATCGATCTGTTTTTGAGCACGGTGACAGAACATTCCTGTCAGTCATGCTA 1211
BSNT_00115___ 1218 CAAGAAAAACAGGTGCTGGGTACAGAACTTTGATAAAACATATGACTTAA 1267
.||||||||||.|||||||||.|||||||||||||||||||||||.||.|
BL00506___spo 1212 TAAGAAAAACAAGTGCTGGGTTCAGAACTTTGATAAAACATATGATTTGA 1261
BSNT_00115___ 1268 TGAAACAAGTTATGCTTGAAACAGAGGAAAAAGAATATGCATCAAACCGA 1317
||||||..|||||||..|||||.||.|||||..|||||.....||||||.
BL00506___spo 1262 TGAAACGGGTTATGCAGGAAACGGAAGAAAAGCAATATTTTAAAAACCGC 1311
BSNT_00115___ 1318 AGGCTGAAAAAAGAGTTTCAACAGTATTGTTCTAAATCCAAGCAGGTTGA 1367
|.|||||||||.||||||||.|||.|.||.||.|||||.|||||.||.||
BL00506___spo 1312 AAGCTGAAAAAGGAGTTTCATCAGCACTGCTCCAAATCAAAGCAAGTAGA 1361
BSNT_00115___ 1368 AGAGCTGATTGAGGATGAGCTCGCACATCATCATGC---CCATTTGACAC 1414
||.|||||||||.||.|||||..|.|||..|...|| ||| ||||.
BL00506___spo 1362 AGCGCTGATTGAAGACGAGCTGACTCATTTTAGGGCGAACCA---GACAT 1408
BSNT_00115___ 1415 TCAAGAAAAAAGTCCAAGACAGCAGGCGCCTTGTTGCTGAACAGCTTTTA 1464
|.||..||||.||.||.||||||||.||.||.|||||.||.||||||.|.
BL00506___spo 1409 TAAAACAAAAGGTGCATGACAGCAGACGTCTCGTTGCAGAGCAGCTTCTC 1458
BSNT_00115___ 1465 GGCGTTTCTGAGGTTATGGCCGACTTTTCTCGGGAAATAAAAAGAGAGCG 1514
|||||||||.||||||||||.|||||||||||||||||||||||.||..|
BL00506___spo 1459 GGCGTTTCTCAGGTTATGGCGGACTTTTCTCGGGAAATAAAAAGGGAAAG 1508
BSNT_00115___ 1515 AGAACAGCACTTTCTGCAGGAAGAGCAAATCATAGAAGCGCTTCAGCATT 1564
.||.|||||.|||.|.||.|||||||||||....||.|||||.|||||.|
BL00506___spo 1509 GGAGCAGCATTTTATTCAAGAAGAGCAAATTCGGGATGCGCTGCAGCACT 1558
BSNT_00115___ 1565 TCGGAATTGAGATTCAGCATGTCGAGATCTATAGTCTTGAACAAGGAAAT 1614
||||.||.|||||||||||.|||||.||.||.||.|||||.||.|||||.
BL00506___spo 1559 TCGGCATCGAGATTCAGCAAGTCGAAATATACAGCCTTGAGCAGGGAAAC 1608
BSNT_00115___ 1615 ATCGATATTGAAATGACCATTCCG---TTCAGCGGACATGGAGAAAGTGA 1661
||||||||||||||||..||.||| |.||.|||.||||||||..||||
BL00506___spo 1609 ATCGATATTGAAATGAGTATCCCGTATTGCAACGGCCATGGAGAGTGTGA 1658
BSNT_00115___ 1662 AAAAATCATTGCTCCTATGCTTTCTGACATTCTGGAGGAACAAATTCTTG 1711
|||||||||.|||||.|||||.||.||.|||.||||.|||||||||.|.|
BL00506___spo 1659 AAAAATCATCGCTCCGATGCTGTCCGATATTTTGGAAGAACAAATTATCG 1708
BSNT_00115___ 1712 TGAAAGCCGAACAGCACT-CTCCG--CATCCGAATGGATACAGCCATGTC 1758
|.|||||.|||||| | |.||| ||||||||||||||..|.|||||.
BL00506___spo 1709 TCAAAGCAGAACAG---TGCGCCGGCCATCCGAATGGATATTGTCATGTT 1755
BSNT_00115___ 1759 GCCTTTGGATCAACAAAATCATACAGGGTGTCCACGGGAGCTGCTCACGC 1808
|||||.||.||..|.||.||||||||||||...||.|||||.||.||.||
BL00506___spo 1756 GCCTTCGGTTCGGCGAAGTCATACAGGGTGGTGACAGGAGCCGCGCATGC 1805
BSNT_00115___ 1809 TGCGAAGGGCGGCGGCCTTGTCTCCGGTGACAGCTACAGCATGATGGAGC 1858
.||.||.|||||.||.|||||||||||.||||||||||..||||||||||
BL00506___spo 1806 AGCAAAAGGCGGAGGGCTTGTCTCCGGCGACAGCTACAATATGATGGAGC 1855
BSNT_00115___ 1859 TTGGAGCCAGAAAATATGCTGCAGCAATCAGTGACGGAATGGGCAATGGC 1908
|.||..||.|.||||||||.||.||.||.||.||.||.|||||.||||||
BL00506___spo 1856 TCGGCACCGGCAAATATGCCGCCGCCATTAGCGATGGTATGGGAAATGGC 1905
BSNT_00115___ 1909 GCAAGAGCGCACTTTGAAAGCAATGAAACGATCAAGCTTCTTGAAAAAAT 1958
|||||.||.||.||||||||||||||.|||||||||||.||.|||||.||
BL00506___spo 1906 GCAAGGGCCCATTTTGAAAGCAATGAGACGATCAAGCTGCTGGAAAAGAT 1955
BSNT_00115___ 1959 CCTTGAATCGGGCATTGATGAAAAAATAGCAATTAAAACGATCAACAGCA 2008
.|||.|.||||||||.||.||||||.|.||.|||||||||||.|||||||
BL00506___spo 1956 TCTTCAGTCGGGCATCGACGAAAAAGTGGCGATTAAAACGATTAACAGCA 2005
BSNT_00115___ 2009 TACTGTCTCTAAGGACAACTGACGAAATATATTCCACGCTTGACCTATCT 2058
|.||.||..||||||||||.||.|||||.|||||.||..|.||..||||.
BL00506___spo 2006 TTCTTTCATTAAGGACAACAGATGAAATTTATTCGACATTGGATTTATCG 2055
BSNT_00115___ 2059 ATTATCGATCTTCAAGATGCCAGCTGTAAATTTTTGAAGGTTGGATCGAC 2108
.|.|||||||||||.|||||.|||||.||.||||||||..|.||.||.||
BL00506___spo 2056 GTCATCGATCTTCAGGATGCGAGCTGCAAGTTTTTGAAAATCGGCTCCAC 2105
BSNT_00115___ 2109 GCCCAGCTTTATCAAACGGGGTGACCAGGTCATGAAAGTTCAAGCGAGCA 2158
.||.||||||||.|||.|.||.||.||..|.||.|||||.||.||.||||
BL00506___spo 2106 CCCGAGCTTTATTAAAAGAGGCGATCAAATTATAAAAGTGCAGGCCAGCA 2155
BSNT_00115___ 2159 ATCTGCCAATCGGTATTATTAATGAATTCGATGTGGAGGTTGTGAGTGAA 2208
|||||||.|||||.||.||||..|||||||||||.||.|||||.||.||.
BL00506___spo 2156 ATCTGCCGATCGGCATCATTACAGAATTCGATGTCGATGTTGTCAGCGAG 2205
BSNT_00115___ 2209 CAGCTGAAAGCGGGTGACCTCTTAATTATGATGAGTGATGGCATTTTTGA 2258
||..|.||||||||.|||||.||.||.||||||||.||.||.||.|||||
BL00506___spo 2206 CAATTAAAAGCGGGAGACCTTTTGATCATGATGAGCGACGGAATCTTTGA 2255
BSNT_00115___ 2259 GGGGCCTAAGCATGTGGAAAATCACGACTTATGGATGAAACGTAAAATGA 2308
.|||||.|..||||||||||||||.||..|.||||||||.||.|||.|||
BL00506___spo 2256 AGGGCCGAGACATGTGGAAAATCATGATCTGTGGATGAAGCGCAAATTGA 2305
BSNT_00115___ 2309 AAGGGTTGAAAACAAATGACCCGCAGGAGATTGCCGATTTGCTTATGGAA 2358
||..|.|||||||..|.||.||||||||.||.|||||.||..|.||||||
BL00506___spo 2306 AATCGCTGAAAACCGAGGAGCCGCAGGAAATCGCCGACTTAATCATGGAA 2355
BSNT_00115___ 2359 GAAGTCATCCGCACAAGATCCGGCCAAATTGAGGACGATATGACTGTTGT 2408
|||||.|||||.|||||.||.||.|..|||||||||||.|||||.||..|
BL00506___spo 2356 GAAGTGATCCGGACAAGGTCGGGTCTGATTGAGGACGACATGACGGTGAT 2405
BSNT_00115___ 2409 TGTCGTCCGGATTGATCACAATACACCGAAGTGGGCATCCATTCCTGTTC 2458
||||.||..|.|.||.||.|||||.||.||||||||.||||||||.|..|
BL00506___spo 2406 TGTCATCAAGCTGGACCATAATACGCCAAAGTGGGCCTCCATTCCGGCGC 2455
BSNT_00115___ 2459 CGGCAATCTTTCAAAACAAACAAGAAATTTCATAA 2493
||||..|.||.|||||.||.|||||.|||||.||.
BL00506___spo 2456 CGGCTTTTTTCCAAAAGAATCAAGAGATTTCTTAG 2490
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