Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00119 and BL00503
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:47
# Commandline: needle
# -asequence dna-align/BSNT_00119___yacA.1.5803.seq
# -bsequence dna-align/BL00503___tilS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00119___yacA-BL00503___tilS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00119___yacA-BL00503___tilS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00119___yacA
# 2: BL00503___tilS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1512
# Identity: 1038/1512 (68.7%)
# Similarity: 1038/1512 (68.7%)
# Gaps: 174/1512 (11.5%)
# Score: 3431.0
#
#
#=======================================
BSNT_00119___ 1 GTGAAAAGTGTCAAAGATTTTTTAAACAAACACAATCTTACGTTAAAAGG 50
|||||||||.|..|||||||..|.||.|||.||.|.||..|.||..|.||
BL00503___til 1 GTGAAAAGTATTGAAGATTTCATGAAAAAATACGAACTGTCATTTGATGG 50
BSNT_00119___ 51 GGCGACAATCATTGTAGGCGTTTCTGGCGGTCCGGACTCAATGGCTCTTC 100
.|.|||..|.||||.|||.||.||.|||||.||.||.||.|||||.|||.
BL00503___til 51 AGTGACGCTGATTGCAGGTGTCTCCGGCGGACCTGATTCGATGGCGCTTT 100
BSNT_00119___ 101 TTCACGCGTTG---CATACGTTATGCGGCCGTTCAGCGAATG-TTATTGC 146
|.||.||..|| ||||||.| |.|.|| |||.|| ||.| |.|||||
BL00503___til 101 TGCATGCTCTGCACCATACGGT-TCCCGC--TTCTGC-AACGCTGATTGC 146
BSNT_00119___ 147 AGCTCACGTTGACCATCGGTTCAGAGGTGCGGAATCCGAGGAGGACATGC 196
.||.|||||.||.|||..|||||||||.|..||.||||||...||.||||
BL00503___til 147 CGCACACGTCGATCATATGTTCAGAGGCGAAGAGTCCGAGCGTGATATGC 196
BSNT_00119___ 197 GTTTTGTCCAAGCTTATTGTAAAGCTGA------ACAGCTCGTGTGCGAA 240
|.||.||.||.|..||.||..|.||.|| ||| .|||||.
BL00503___til 197 GGTTCGTTCAGGACTACTGCGAGGCGGAAGGCATACA------ATGCGAG 240
BSNT_00119___ 241 ACGGCTCAAATCAATGTAACC--GCATATGCACAGGAAAAAGGACTCAAT 288
.|||..||||||.|||| || ||||.|||....|||||....||.|||
BL00503___til 241 GCGGTGCAAATCGATGT--CCTGGCATTTGCCGCTGAAAACAATCTGAAT 288
BSNT_00119___ 289 AAGCAGGCTGCAGCACGTGATTGCCGCTACCAGTTTTTTGAAGAAATCAT 338
||.||||||||.||..|.||.|||||.||...|||||||.||||..|.||
BL00503___til 289 AAACAGGCTGCTGCGAGAGAATGCCGGTATGCGTTTTTTCAAGAGTTAAT 338
BSNT_00119___ 339 GTCGAAGCACCAAGCGGACTATCTAGCTCTTGCGCATCATGGTGATGACC 388
|...|.|||||..||.||.||.||.|.|||.|..||||||||.|||||.|
BL00503___til 339 GAAAAGGCACCGGGCCGAATACCTGGTTCTGGGTCATCATGGAGATGATC 388
BSNT_00119___ 389 AGGTTGAAACAATGCTTATGAAACTGGCTAAGGGTACGCTTGGAA-CGGG 437
||||.||.||.|||||.|||||..||||.||.||.||..|.|||| ||||
BL00503___til 389 AGGTGGAGACGATGCTGATGAAGATGGCAAAAGGCACTGTCGGAATCGGG 438
BSNT_00119___ 438 ACTTGCGGGAATGCAGCCGGTTA----GACGTTTTGGGAC-GGGGC-GGA 481
|||||.|||||.||||| | |.|||||| ||| |.||| ||.
BL00503___til 439 -CTTGCCGGAATTCAGCC----AAAGCGCCGTTTT--GACAGCGGCTGGC 481
BSNT_00119___ 482 TCATCAGGCCG-TTCTTAACCATTACAAAGGAAGAGATCCTTCACTATTG 530
|..|||||||| ||||.||.| |..|||||||.|| .||.|||
BL00503___til 482 TGCTCAGGCCGTTTCTGAAGC-TGTCAAAGGATGA--------TCTTTTG 522
BSNT_00119___ 531 CCGT---------------GAAAACGGTTT-GAGCTACCGGACGGATGAA 564
.|.| |||.||.|||| || ||.|||...
BL00503___til 523 GCTTACTGCAAAGAGAATCGAATACCGTTTAGA--------ACCGATCCG 564
BSNT_00119___ 565 AGCAACGCCAAAGATGACTACACAAGAAACAGATTCAGAAAAACA-GTGC 613
||||||....|.|||||.|||||.||.|||.|.||||| ..|.|| ||.|
BL00503___til 565 AGCAACAGTGAGGATGATTACACCAGGAACCGGTTCAG-GCACCATGTTC 613
BSNT_00119___ 614 TCCCGTTTTTGAAGCAGGAATCTCCGGATGTGCATAAAAGGTTTCAGAAA 663
||||.|||.|||||.|.||.||....|||||.||||||||||||||....
BL00503___til 614 TCCCTTTTCTGAAGAAAGAGTCGGAAGATGTCCATAAAAGGTTTCAATCC 663
BSNT_00119___ 664 GTGAGTGAAGCACTGACGGAAGATGAGCAATTCTTACAGTCATTAACGAA 713
||.||||||...|||||.|||||.||...||.|||||||.||||||||||
BL00503___til 664 GTCAGTGAATTCCTGACAGAAGACGAATTATACTTACAGGCATTAACGAA 713
BSNT_00119___ 714 AGATGAAATGAATAAAGTAATCACAAGCCAGTCTAATACATCAGTTGAAA 763
|||..|||||||||.|||||||||||||.||||.|.|.||...||.||||
BL00503___til 714 AGACAAAATGAATACAGTAATCACAAGCAAGTCAAGTTCAGGCGTGGAAA 763
BSNT_00119___ 764 TCA--ATTCCTCTCAATTGCTTGCCCTCCCGATGCCTTTACAAAGAAGAG 811
||| || |...|.|.|.|||||.|||||.|||||||||||||||||.|
BL00503___til 764 TCAGCAT--CGAACGACTTCTTGCGCTCCCTATGCCTTTACAAAGAAGGG 811
BSNT_00119___ 812 GAGTTCAACTAATATTAAACTATCTTTATGAAAACGTTCCATCATCCTTT 861
|||||||.||||||||||||||||||||||||||||||||||||.|.|||
BL00503___til 812 GAGTTCATCTAATATTAAACTATCTTTATGAAAACGTTCCATCAGCGTTT 861
BSNT_00119___ 862 TCAGCCCATCACATTCAGCAGTTTCTCGATTGGGCGGA----AAATGGCA 907
|||||||||||.|||||...||||||.|||| ||| |.|.|.|.
BL00503___til 862 TCAGCCCATCATATTCAAGTGTTTCTGGATT----GGATTTCACAAGACG 907
BSNT_00119___ 908 GTCCTTCAGGAGTACTGGACTTTCCGAAAGGACTGAAGGTGGTCAAATCA 957
|.||.||.||....||.||.||||||||.||..|.||.||.|..|||||.
BL00503___til 908 GACCATCCGGTTCCCTTGATTTTCCGAATGGGTTAAAAGTCGCAAAATCT 957
BSNT_00119___ 958 TATCAGACATGTTTGTTTACATTTGA------ACAATGGCAGTGCAAAAA 1001
|||||.||||||||||||||||||.| ||||| ||| ||||
BL00503___til 958 TATCATACATGTTTGTTTACATTTCAGCGTTTACAAT----GTG--AAAA 1001
BSNT_00119___ 1002 TGTTCCCTTTGAATACCAAATTAGCGGAGCTGCTGATGAA---------- 1041
||||.|||.|.|.||..||||.|||||.||.|..||.|||
BL00503___til 1002 TGTTTCCTATCATTATGAAATAAGCGGGGCAGGCGAAGAAGAACTGATAC 1051
BSNT_00119___ 1042 ---ACGGCAG-TGCTCCCTAATGGAT-ATCTGATAGAGGCAAGGCATTAT 1086
.||||.| |.|||||| | ||.|||
BL00503___til 1052 TTCCCGGCGGCTCCTCCCT------TCATGTGA----------------- 1078
BSNT_00119___ 1087 GCGGACTCG-------CCTGAAG-AACATGGGAATGCTGTTTTTATCACA 1128
||||||.|| ||.|||| ..||.||.||||.|||||||...|||
BL00503___til 1079 GCGGACCCGGTTCAACCCGGAAGCTGCAAGGAAATGATGTTTTTGCAACA 1128
BSNT_00119___ 1129 AGTGAAAAAAAGGTGCGGTTT-CCCTTAACAATCCGGACGAG--AAAAGC 1175
|||...||..||||.|.|||| |||||.|| .|.|||||.|| ||||
BL00503___til 1129 AGTCCCAAGCAGGTTCAGTTTCCCCTTTAC-GTACGGACAAGGCAAAA-- 1175
BSNT_00119___ 1176 TGGAGACCGGATCAAACTAAAAGGGATGAACGGCTCAAAAAAGGTAAAGG 1225
.||||||||..|||||||.||||||||||||||||||||||||||.||.|
BL00503___til 1176 CGGAGACCGAGTCAAACTTAAAGGGATGAACGGCTCAAAAAAGGTTAAAG 1225
BSNT_00119___ 1226 ATATATTTATTGATAAGAAACTGCCTC-TCCAAGAAAGAGACAACTGGCC 1274
||||||||||||||.|.|||.|||||| |.||| |||||||||.||||||
BL00503___til 1226 ATATATTTATTGATGAAAAAGTGCCTCTTTCAA-AAAGAGACAGCTGGCC 1274
BSNT_00119___ 1275 GATTGTGACGGACGCAAGCGGT--GAA--ATTATCTGGATACCTGGCTTG 1320
.|||||.||.||| ||||| ||| |||||||||||||||||..||
BL00503___til 1275 CATTGTAACAGAC----GCGGTTGGAAACATTATCTGGATACCTGGTCTG 1320
BSNT_00119___ 1321 AAAAAATCAATTTTTGAAGATCTTG-TGATTCCAAACAGCGACCGCATTG 1369
||||||.|.||||||||.||.|||| || ||.||||||.|||.|||||||
BL00503___til 1321 AAAAAAACCATTTTTGAGGAACTTGATG-TTACAAACAACGATCGCATTG 1369
BSNT_00119___ 1370 TATTACAATATAGACAGCATGAAAAGTGTAGGGGGCAAGCAA------AA 1413
||||||||||||||||||||||||||||||||||||.||||| ||
BL00503___til 1370 TATTACAATATAGACAGCATGAAAAGTGTAGGGGGCTAGCAAAGAATGAA 1419
BSNT_00119___ 1414 TCATGA------ 1419
.||.||
BL00503___til 1420 ACAGGATATTGA 1431
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