Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00119 and BL00503

See Amino acid alignment / Visit BSNT_00119 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:47
# Commandline: needle
#    -asequence dna-align/BSNT_00119___yacA.1.5803.seq
#    -bsequence dna-align/BL00503___tilS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00119___yacA-BL00503___tilS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00119___yacA-BL00503___tilS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00119___yacA
# 2: BL00503___tilS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1512
# Identity:    1038/1512 (68.7%)
# Similarity:  1038/1512 (68.7%)
# Gaps:         174/1512 (11.5%)
# Score: 3431.0
# 
#
#=======================================

BSNT_00119___      1 GTGAAAAGTGTCAAAGATTTTTTAAACAAACACAATCTTACGTTAAAAGG     50
                     |||||||||.|..|||||||..|.||.|||.||.|.||..|.||..|.||
BL00503___til      1 GTGAAAAGTATTGAAGATTTCATGAAAAAATACGAACTGTCATTTGATGG     50

BSNT_00119___     51 GGCGACAATCATTGTAGGCGTTTCTGGCGGTCCGGACTCAATGGCTCTTC    100
                     .|.|||..|.||||.|||.||.||.|||||.||.||.||.|||||.|||.
BL00503___til     51 AGTGACGCTGATTGCAGGTGTCTCCGGCGGACCTGATTCGATGGCGCTTT    100

BSNT_00119___    101 TTCACGCGTTG---CATACGTTATGCGGCCGTTCAGCGAATG-TTATTGC    146
                     |.||.||..||   ||||||.| |.|.||  |||.|| ||.| |.|||||
BL00503___til    101 TGCATGCTCTGCACCATACGGT-TCCCGC--TTCTGC-AACGCTGATTGC    146

BSNT_00119___    147 AGCTCACGTTGACCATCGGTTCAGAGGTGCGGAATCCGAGGAGGACATGC    196
                     .||.|||||.||.|||..|||||||||.|..||.||||||...||.||||
BL00503___til    147 CGCACACGTCGATCATATGTTCAGAGGCGAAGAGTCCGAGCGTGATATGC    196

BSNT_00119___    197 GTTTTGTCCAAGCTTATTGTAAAGCTGA------ACAGCTCGTGTGCGAA    240
                     |.||.||.||.|..||.||..|.||.||      |||      .|||||.
BL00503___til    197 GGTTCGTTCAGGACTACTGCGAGGCGGAAGGCATACA------ATGCGAG    240

BSNT_00119___    241 ACGGCTCAAATCAATGTAACC--GCATATGCACAGGAAAAAGGACTCAAT    288
                     .|||..||||||.||||  ||  ||||.|||....|||||....||.|||
BL00503___til    241 GCGGTGCAAATCGATGT--CCTGGCATTTGCCGCTGAAAACAATCTGAAT    288

BSNT_00119___    289 AAGCAGGCTGCAGCACGTGATTGCCGCTACCAGTTTTTTGAAGAAATCAT    338
                     ||.||||||||.||..|.||.|||||.||...|||||||.||||..|.||
BL00503___til    289 AAACAGGCTGCTGCGAGAGAATGCCGGTATGCGTTTTTTCAAGAGTTAAT    338

BSNT_00119___    339 GTCGAAGCACCAAGCGGACTATCTAGCTCTTGCGCATCATGGTGATGACC    388
                     |...|.|||||..||.||.||.||.|.|||.|..||||||||.|||||.|
BL00503___til    339 GAAAAGGCACCGGGCCGAATACCTGGTTCTGGGTCATCATGGAGATGATC    388

BSNT_00119___    389 AGGTTGAAACAATGCTTATGAAACTGGCTAAGGGTACGCTTGGAA-CGGG    437
                     ||||.||.||.|||||.|||||..||||.||.||.||..|.|||| ||||
BL00503___til    389 AGGTGGAGACGATGCTGATGAAGATGGCAAAAGGCACTGTCGGAATCGGG    438

BSNT_00119___    438 ACTTGCGGGAATGCAGCCGGTTA----GACGTTTTGGGAC-GGGGC-GGA    481
                      |||||.|||||.|||||    |    |.||||||  ||| |.||| ||.
BL00503___til    439 -CTTGCCGGAATTCAGCC----AAAGCGCCGTTTT--GACAGCGGCTGGC    481

BSNT_00119___    482 TCATCAGGCCG-TTCTTAACCATTACAAAGGAAGAGATCCTTCACTATTG    530
                     |..|||||||| ||||.||.| |..|||||||.||        .||.|||
BL00503___til    482 TGCTCAGGCCGTTTCTGAAGC-TGTCAAAGGATGA--------TCTTTTG    522

BSNT_00119___    531 CCGT---------------GAAAACGGTTT-GAGCTACCGGACGGATGAA    564
                     .|.|               |||.||.|||| ||        ||.|||...
BL00503___til    523 GCTTACTGCAAAGAGAATCGAATACCGTTTAGA--------ACCGATCCG    564

BSNT_00119___    565 AGCAACGCCAAAGATGACTACACAAGAAACAGATTCAGAAAAACA-GTGC    613
                     ||||||....|.|||||.|||||.||.|||.|.||||| ..|.|| ||.|
BL00503___til    565 AGCAACAGTGAGGATGATTACACCAGGAACCGGTTCAG-GCACCATGTTC    613

BSNT_00119___    614 TCCCGTTTTTGAAGCAGGAATCTCCGGATGTGCATAAAAGGTTTCAGAAA    663
                     ||||.|||.|||||.|.||.||....|||||.||||||||||||||....
BL00503___til    614 TCCCTTTTCTGAAGAAAGAGTCGGAAGATGTCCATAAAAGGTTTCAATCC    663

BSNT_00119___    664 GTGAGTGAAGCACTGACGGAAGATGAGCAATTCTTACAGTCATTAACGAA    713
                     ||.||||||...|||||.|||||.||...||.|||||||.||||||||||
BL00503___til    664 GTCAGTGAATTCCTGACAGAAGACGAATTATACTTACAGGCATTAACGAA    713

BSNT_00119___    714 AGATGAAATGAATAAAGTAATCACAAGCCAGTCTAATACATCAGTTGAAA    763
                     |||..|||||||||.|||||||||||||.||||.|.|.||...||.||||
BL00503___til    714 AGACAAAATGAATACAGTAATCACAAGCAAGTCAAGTTCAGGCGTGGAAA    763

BSNT_00119___    764 TCA--ATTCCTCTCAATTGCTTGCCCTCCCGATGCCTTTACAAAGAAGAG    811
                     |||  ||  |...|.|.|.|||||.|||||.|||||||||||||||||.|
BL00503___til    764 TCAGCAT--CGAACGACTTCTTGCGCTCCCTATGCCTTTACAAAGAAGGG    811

BSNT_00119___    812 GAGTTCAACTAATATTAAACTATCTTTATGAAAACGTTCCATCATCCTTT    861
                     |||||||.||||||||||||||||||||||||||||||||||||.|.|||
BL00503___til    812 GAGTTCATCTAATATTAAACTATCTTTATGAAAACGTTCCATCAGCGTTT    861

BSNT_00119___    862 TCAGCCCATCACATTCAGCAGTTTCTCGATTGGGCGGA----AAATGGCA    907
                     |||||||||||.|||||...||||||.||||    |||    |.|.|.|.
BL00503___til    862 TCAGCCCATCATATTCAAGTGTTTCTGGATT----GGATTTCACAAGACG    907

BSNT_00119___    908 GTCCTTCAGGAGTACTGGACTTTCCGAAAGGACTGAAGGTGGTCAAATCA    957
                     |.||.||.||....||.||.||||||||.||..|.||.||.|..|||||.
BL00503___til    908 GACCATCCGGTTCCCTTGATTTTCCGAATGGGTTAAAAGTCGCAAAATCT    957

BSNT_00119___    958 TATCAGACATGTTTGTTTACATTTGA------ACAATGGCAGTGCAAAAA   1001
                     |||||.||||||||||||||||||.|      |||||    |||  ||||
BL00503___til    958 TATCATACATGTTTGTTTACATTTCAGCGTTTACAAT----GTG--AAAA   1001

BSNT_00119___   1002 TGTTCCCTTTGAATACCAAATTAGCGGAGCTGCTGATGAA----------   1041
                     ||||.|||.|.|.||..||||.|||||.||.|..||.|||          
BL00503___til   1002 TGTTTCCTATCATTATGAAATAAGCGGGGCAGGCGAAGAAGAACTGATAC   1051

BSNT_00119___   1042 ---ACGGCAG-TGCTCCCTAATGGAT-ATCTGATAGAGGCAAGGCATTAT   1086
                        .||||.| |.||||||      | ||.|||                 
BL00503___til   1052 TTCCCGGCGGCTCCTCCCT------TCATGTGA-----------------   1078

BSNT_00119___   1087 GCGGACTCG-------CCTGAAG-AACATGGGAATGCTGTTTTTATCACA   1128
                     ||||||.||       ||.|||| ..||.||.||||.|||||||...|||
BL00503___til   1079 GCGGACCCGGTTCAACCCGGAAGCTGCAAGGAAATGATGTTTTTGCAACA   1128

BSNT_00119___   1129 AGTGAAAAAAAGGTGCGGTTT-CCCTTAACAATCCGGACGAG--AAAAGC   1175
                     |||...||..||||.|.|||| |||||.|| .|.|||||.||  ||||  
BL00503___til   1129 AGTCCCAAGCAGGTTCAGTTTCCCCTTTAC-GTACGGACAAGGCAAAA--   1175

BSNT_00119___   1176 TGGAGACCGGATCAAACTAAAAGGGATGAACGGCTCAAAAAAGGTAAAGG   1225
                     .||||||||..|||||||.||||||||||||||||||||||||||.||.|
BL00503___til   1176 CGGAGACCGAGTCAAACTTAAAGGGATGAACGGCTCAAAAAAGGTTAAAG   1225

BSNT_00119___   1226 ATATATTTATTGATAAGAAACTGCCTC-TCCAAGAAAGAGACAACTGGCC   1274
                     ||||||||||||||.|.|||.|||||| |.||| |||||||||.||||||
BL00503___til   1226 ATATATTTATTGATGAAAAAGTGCCTCTTTCAA-AAAGAGACAGCTGGCC   1274

BSNT_00119___   1275 GATTGTGACGGACGCAAGCGGT--GAA--ATTATCTGGATACCTGGCTTG   1320
                     .|||||.||.|||    |||||  |||  |||||||||||||||||..||
BL00503___til   1275 CATTGTAACAGAC----GCGGTTGGAAACATTATCTGGATACCTGGTCTG   1320

BSNT_00119___   1321 AAAAAATCAATTTTTGAAGATCTTG-TGATTCCAAACAGCGACCGCATTG   1369
                     ||||||.|.||||||||.||.|||| || ||.||||||.|||.|||||||
BL00503___til   1321 AAAAAAACCATTTTTGAGGAACTTGATG-TTACAAACAACGATCGCATTG   1369

BSNT_00119___   1370 TATTACAATATAGACAGCATGAAAAGTGTAGGGGGCAAGCAA------AA   1413
                     ||||||||||||||||||||||||||||||||||||.|||||      ||
BL00503___til   1370 TATTACAATATAGACAGCATGAAAAGTGTAGGGGGCTAGCAAAGAATGAA   1419

BSNT_00119___   1414 TCATGA------   1419
                     .||.||      
BL00503___til   1420 ACAGGATATTGA   1431


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