Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02054 and BL00501
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:32
# Commandline: needle
# -asequence dna-align/BSNT_02054___yjeA.1.5803.seq
# -bsequence dna-align/BL00501___yjeA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02054___yjeA-BL00501___yjeA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02054___yjeA-BL00501___yjeA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02054___yjeA
# 2: BL00501___yjeA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1565
# Identity: 933/1565 (59.6%)
# Similarity: 933/1565 (59.6%)
# Gaps: 346/1565 (22.1%)
# Score: 2505.0
#
#
#=======================================
BSNT_02054___ 1 TTGT-TGGCAAAAAGAATC--------------AAATG-------GTTTC 28
.||| |||| |||..||| ||||| .|||.
BL00501___yje 1 ATGTCTGGC--AAACCATCATTTCGATGGGTTAAAATGTTGATTTTTTTA 48
BSNT_02054___ 29 ATG-TATTAATAGCAGTTGTATGTGTGG-TGGGCCTTATCGGCTTTTTCC 76
|.| ||||||||| ||.||| .||| || ||.||.|.
BL00501___yje 49 ACGATATTAATAG---------GTTTGGCAGGG---TA----CTCTTACA 82
BSNT_02054___ 77 ATAA----TCATTCATTGAAAAAAGAAACGGTCATGA------------A 110
|||| || |||.|||.|.||.|| |
BL00501___yje 83 ATAAAGTGTC------------AAGCAACAGCCAAGAGCCCCCTCAGCCA 120
BSNT_02054___ 111 TAAAGTAAGA--ACTGATTCTCAAT-----ATGGGAATGTTGAGATCGCA 153
.||| |||| .|.|| |||| .|.|| .||.|| ||| ||
BL00501___yje 121 AAAA--AAGACCGCGGA----CAATCCGGCCTCGG--CGTCGA-ATC-CA 160
BSNT_02054___ 154 ACGCTTGTGCATGACGGGAAAACTTTTAA-----TTACGCGGTTAACTAT 198
|.||..|||||.|.||| .|| .||.||..|..|.|||
BL00501___yje 161 ----TGGTCAATGACAGCAAA-----CAAGAGAGGTATGCCATCCATTAT 201
BSNT_02054___ 199 CCCGT-TTTCA--------AAA---ATGAAAAAATGGATTCGGCATTAAA 236
||.|| ||||| ||| |||||.|||| ||
BL00501___yje 202 CCGGTGTTTCACATAAAAGAAATCGATGAACAAAT-------------AA 238
BSNT_02054___ 237 AAGATTCGCAGAA-AAAGA-------GGTTCGTCAATTTCAAAAGGA-AA 277
||||||....||| .|||| ||| |||.||.|||| ||
BL00501___yje 239 AAGATTATGTGAATCAAGAATTGGCCGGT-------TTTAAAGAGGATAA 281
BSNT_02054___ 278 C-AAAAGACGTTGACCAAG---AGCAT-ACGAC--------AAAACGCAA 314
| .|||| |.|||.| ||.|| |.||| ..|||..||
BL00501___yje 282 CGCAAAG-----GCCCAGGCTCAGGATGAAGACGGGCCTTTTGAACTGAA 326
BSNT_02054___ 315 CGAATTAAATGTTGATTATAAAATTGTCCATTATGCCAA----ACAGACA 360
| |||||| |||||..|||||.|||||.|.|| ||.|.||
BL00501___yje 327 C--ATTAAA-------TATAAGGTTGTCTATTATACAAAGGATACGGCCA 367
BSNT_02054___ 361 GTGGCGATTGTATTTAATGAATATAAATACATCGGCGGGGCACACGGGCA 410
||| ||||..|.|||.||||.|.|.|...||||||.|.| .||||.|
BL00501___yje 368 GTG----TTGTGCTGAATCAATACATAGAGGCCGGCGGCGTA-TCGGGTA 412
BSNT_02054___ 411 ----AACCGTGAAAAAAACGTTTAACTATGATTT-TAGTA-AACAAGCGT 454
|.|.|| .||.|||||||||..|||||| .||.| ||.||||
BL00501___yje 413 CAACATCTGT---CAAGACGTTTAACGCTGATTTAAAGCAGAAAAAGC-- 457
BSNT_02054___ 455 TTCTTTCCATTGATGATATTTTCAAAGAGGACGCTGACT------ACA-- 496
|.||.|||.||.|.|||.|.||..|||||.|..|.||.| |||
BL00501___yje 458 TGCTGTCCCTTCAAGATCTGTTTGAAGAGAATTCAGATTTTCTGAACAGG 507
BSNT_02054___ 497 --TACATAAGCTTTCGTTAATCGCTTATCACGAGCTGAAAAA---GAATA 541
|.| |||| ||.||.|||||.||..||||||| ||||
BL00501___yje 508 ATTTC--AAGC--------ATTGCCTATCAGGAATTGAAAAATCGGAAT- 546
BSNT_02054___ 542 AGGACATTGCC----GCGGACGATGCGC--TGTTAAAGGAAGGGACG-GC 584
|| ||.||| ||| || |.|||||.||||||||| ||
BL00501___yje 547 ---------CCGTCTGCTGAC-ATG-GCTTTATTAAAAGAAGGGACGAGC 585
BSNT_02054___ 585 TCCGAAAGTAGAAAATTTCAGCCGCTTTGC-CATC-----AAGGAGGATT 628
||..|.|.||||.|||||||||||||.|| |.|| ||.||||
BL00501___yje 586 -CCTCAGGAAGAACATTTCAGCCGCTTCGCGCTTCTTGAAAACGAGG--- 631
BSNT_02054___ 629 ATATCGAACTTTACTTTGACACATATCAGGTTGCAGCAGGCTATCTTGGA 678
|.|||.||||.|||||.|.|.|.|| |.|.|| |||||.|
BL00501___yje 632 ---TGGAATTTTATTTTGAGAAAAAACA------AACCGG---TCTTGAA 669
BSNT_02054___ 679 GAG-----CAATCGATTGCCATTAAGAAAAGTCT-TTTGAAAGACATTCT 722
.|| .|| |.|||.|||||..| ..|.|||||.|||.|
BL00501___yje 670 CAGTCTGTAAA---------AATAAAAAAAGAATGGGTAAAAGATATTTT 710
BSNT_02054___ 723 GAAAGAACAATATATTGATAAAGCAAAAAATAAAAATAAAATC----AAA 768
.|||||.|.|||| ||..|.||.|||| |.|||| ..|
BL00501___yje 711 AAAAGACCGATAT----------CAGGATATGAAAA-AGAATCGTCTTCA 749
BSNT_02054___ 769 GAACAAA----AGCCGAAGCATGAAGTGATTTCTTTACCCA---AAGAGG 811
|..|||| |.|.|.|||.|| ||.|..|.||.| |||.|.
BL00501___yje 750 GGCCAAACCTGATCAGGAGCCTG------TTCCGCTTCCGAAGCAAGCGA 793
BSNT_02054___ 812 AAACGGTTGATCCAAATCAAAAAGTCATTGCGCTTACTTTCGACGATGGC 861
||| ||.||||..||.|||||||.|||||.||.||.||.||.||.||.
BL00501___yje 794 AAA---TTAATCCCGATGAAAAAGTGATTGCCCTCACATTTGATGACGGT 840
BSNT_02054___ 862 CCGAATCCTGCGACAACAAATCAGATTCTAGACTCCTTGAAGAAATAT-A 910
||||||||.||.|||||.|||.|.||..||.||.|.||..||||..|| |
BL00501___yje 841 CCGAATCCCGCTACAACGAATAAAATATTAAACGCTTTACAGAAGCATGA 890
BSNT_02054___ 911 AGGGTCATGCCACGTTTTTTGTTTTGGGGAGCAGGGTTCAATATTATCCG 960
|||| |||||.||.||.|||||..|.||.|||||.|..|||||||||||.
BL00501___yje 891 AGGG-CATGCGACCTTCTTTGTGCTTGGAAGCAGAGCGCAATATTATCCC 939
BSNT_02054___ 961 GAAACGCTAATAAGAATGCTGAAAGAAGGAAATGAGGTGGGGAACCATTC 1010
||||||.|||.|.|.||||||||.||||||||.||.||.||.||||||||
BL00501___yje 940 GAAACGATAAAACGGATGCTGAAGGAAGGAAACGAAGTCGGCAACCATTC 989
BSNT_02054___ 1011 ATGGAGCCATCCGCTTCTCACAAGGCTTTC-AGTGAAAGAAGCTTTAAAG 1059
.|||..|||||||.|..|.||||||||.|| |.||||| ||||.|...||
BL00501___yje 990 CTGGGACCATCCGTTATTGACAAGGCTGTCAAATGAAA-AAGCGTATCAG 1038
BSNT_02054___ 1060 CAGATCAATGATACGCAAGACATCATTGAAAAAATAAGCGGATATCGTCC 1109
.||||.||.||.||||||||.||.||.||||||||.||||||.|.|..||
BL00501___yje 1039 GAGATTAACGACACGCAAGAAATGATCGAAAAAATCAGCGGACACCTGCC 1088
BSNT_02054___ 1110 --GACGCTTGTAAGACCCCCATACGGCGGCATTAATGAT-------GAAC 1150
.||.|||| .|.||.|||||||||||.||.|||||| | |
BL00501___yje 1089 TGTACACTTG--CGTCCTCCATACGGCGGGATCAATGATTCCGTCCG--C 1134
BSNT_02054___ 1151 TGCGGAGTCAAATGAAAATGGATGTTGCGTTATGGGATGTTGACCCGGAA 1200
| ||...||.||| .||.|.|||.|.||.|||||||||||.||||||
BL00501___yje 1135 T-CGCTTTCCAAT----CTGAAGGTTTCATTGTGGGATGTTGATCCGGAA 1179
BSNT_02054___ 1201 GATTGGAAAGACCGTAACAAAA------AAACAATTGTTGACCGTGTCAT 1244
|||||||| || |||||| |||..|||||..|.|.||||||
BL00501___yje 1180 GATTGGAA-----GT-ACAAAAATAAGCAAAAGATTGTCAATCATGTCAT 1223
BSNT_02054___ 1245 GAATCAGGCGGGAGATGGAAGAACCATTTTGATTCACGATATTTACCGC- 1293
||..||.||||||||.||||.||.|.|.||.||.||||||||||| .||
BL00501___yje 1224 GAGCCATGCGGGAGACGGAAAAATCGTCTTAATGCACGATATTTA-TGCA 1272
BSNT_02054___ 1294 ACCTCTGCTGATGCGGCCGATGAAATTATAAAAAAGCTCACCGATCAAGG 1343
||.||.||.|||||.||.||.||.|||||.||||||||.|..|...||||
BL00501___yje 1273 ACGTCCGCAGATGCTGCTGAAGAGATTATTAAAAAGCTGAAAGCAAAAGG 1322
BSNT_02054___ 1344 CTATCAATTGGTGACAGTTTCTCAGCTTGAAGAGGTTAAAAAACAAAGAG 1393
||||||||||||.||.||.||||||||||||||.||.||.||.| ||||
BL00501___yje 1323 CTATCAATTGGTAACTGTATCTCAGCTTGAAGAAGTGAAGAAGC--AGAG 1370
BSNT_02054___ 1394 AAGC----GAAATAA 1404
|.|| ||
BL00501___yje 1371 AGGCTATTGA----- 1380
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