Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05268 and BL00495

See Amino acid alignment / Visit BSNT_05268 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:22
# Commandline: needle
#    -asequence dna-align/BSNT_05268___yvdH.1.5803.seq
#    -bsequence dna-align/BL00495___mdxF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05268___yvdH-BL00495___mdxF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05268___yvdH-BL00495___mdxF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05268___yvdH
# 2: BL00495___mdxF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1320
# Identity:    1062/1320 (80.5%)
# Similarity:  1062/1320 (80.5%)
# Gaps:          21/1320 ( 1.6%)
# Score: 4256.5
# 
#
#=======================================

BSNT_05268___      1 ATGAATAAACATCACACACTTGCAAAGCAAAAACGAAAGGCAGGGCTTTT     50
                     |||||.|||.|.||.|||||.|||||.|..|..||.|||||||.|||.||
BL00495___mdx      1 ATGAACAAAGACCAAACACTAGCAAACCGGAGCCGGAAGGCAGCGCTGTT     50

BSNT_05268___     51 ATCGATCATTCCAGGACTTGGGCAGATTGCGAATCAGCAATTGTCAAAGG    100
                     ||||||.|||||.||...|||.||||||||.||.|.|||.||.|||||||
BL00495___mdx     51 ATCGATAATTCCCGGTGCTGGCCAGATTGCAAACCGGCAGTTTTCAAAGG    100

BSNT_05268___    101 GGCTCTTATTTCTAGCCATCACAGGCTTGTTTGCTTTTGAATTATGCG-T    149
                     ||.||.|.|||||||.||||||||||||||||..||.|||.||| ||| |
BL00495___mdx    101 GGATCCTTTTTCTAGTCATCACAGGCTTGTTTATTTGTGAGTTA-GCGAT    149

BSNT_05268___    150 TTTCGGTATA-CAGGCGCTAAGCGGATTGATGACATTGGGAAGTGTTCCC    198
                     ||||||| || ||||||||.|.|||..|..||||..||||.|.|||.|||
BL00495___mdx    150 TTTCGGT-TATCAGGCGCTGATCGGTCTCGTGACGCTGGGGACTGTCCCC    198

BSNT_05268___    199 GGTGAAGATCACTCGCTGTTTATGCTGATTGAAGGCACGCTGCAATTGAT    248
                     ||.|||||.||||||||||||.|..||||.||.|||||||||||||||||
BL00495___mdx    199 GGAGAAGACCACTCGCTGTTTCTCTTGATAGAGGGCACGCTGCAATTGAT    248

BSNT_05268___    249 CGTGACGGTGATTTTCCTCATGTTCTATATCTTTAATATTCATGATTCGC    298
                     ..|||||.|..|||||.|.|||||.||.|||||||||.|..|||||.|.|
BL00495___mdx    249 TTTGACGCTCGTTTTCTTGATGTTTTACATCTTTAATCTGTATGATGCCC    298

BSNT_05268___    299 GTAAGACAGCCGCTATGAAAGCGGCGGGTTTGGAGGTCAATACA-----A    343
                     |.|||||.|||||.|||||.||||||||||||.|    ||| ||     |
BL00495___mdx    299 GGAAGACCGCCGCGATGAAGGCGGCGGGTTTGAA----AAT-CAGCGAGA    343

BSNT_05268___    344 CAGCCAAGGATATGATCTGTCATGCGGGCGATAAAGGGTTTCCATATCTA    393
                     |.||...|||.||||||.|..||||.||.||.|||||||||||.|||.||
BL00495___mdx    344 CGGCTGGGGACATGATCAGAAATGCAGGTGACAAAGGGTTTCCGTATTTA    393

BSNT_05268___    394 TTTACACTGCCGGCATATATCATGATGGTGTTTTTTGTGATTATCTTTCC    443
                     |||||.||||||||||||.|||||||||||   |||||||||||.|||||
BL00495___mdx    394 TTTACGCTGCCGGCATATCTCATGATGGTG---TTTGTGATTATTTTTCC    440

BSNT_05268___    444 GGTTTTGGTGACTCTGTTTGTTGCATTAACAAACTATGATTTTTATCATA    493
                     |||..||||||||||||||.|.||.||.||||||||.|||||||||||||
BL00495___mdx    441 GGTGCTGGTGACTCTGTTTATCGCGTTTACAAACTACGATTTTTATCATA    490

BSNT_05268___    494 TTCCGCCTAATCGTCTGATTGACTGGGTCGGGTTTAAAAATTTCTTAAAT    543
                     |||||||.||..||||.||.|||||||||||.||||||||||||.|.|||
BL00495___mdx    491 TTCCGCCAAACAGTCTCATCGACTGGGTCGGCTTTAAAAATTTCATGAAT    540

BSNT_05268___    544 ATTTTTTTCCTTGGCTCCTATCGTGAAACATTTGTGAATGTACTGGGCTG    593
                     ||.||||||||||||||.|||||..|||||||.|...||||.||||||||
BL00495___mdx    541 ATCTTTTTCCTTGGCTCGTATCGGCAAACATTCGCCGATGTGCTGGGCTG    590

BSNT_05268___    594 GACGGTTATCTGGACAATCTGCGCGACAACGCTGCAAATCATTTTAGGGA    643
                     ||||.|.||||||||.|||||.|||||.|||||||||||..||.|.||.|
BL00495___mdx    591 GACGATCATCTGGACGATCTGTGCGACGACGCTGCAAATTGTTCTCGGCA    640

BSNT_05268___    644 TTGTGACGGCACTTTTCGTCAATCAGGATTTTATAAAAGGCAAGCGGATA    693
                     |.||||||||.||..|||||||||||.|.|||||.||||||||||||||.
BL00495___mdx    641 TCGTGACGGCGCTGATCGTCAATCAGAACTTTATTAAAGGCAAGCGGATG    690

BSNT_05268___    694 TTTCGAATGATTTTCTTATTTCCATGGGCTGTTCCGGCTTTTATTACAAT    743
                     ||.||.||.||.|||.|..||||.|||||.||||||||.||||||||.||
BL00495___mdx    691 TTCCGGATCATCTTCCTGCTTCCGTGGGCCGTTCCGGCATTTATTACGAT    740

BSNT_05268___    744 CATGAGTTTTTCCAACATGTTTAACGA--CAGCATAGGAGCGGTGAATGC    791
                     .|||||.||..|||||||.||.|||||  |.||  .||.|||.||||.|.
BL00495___mdx    741 TATGAGCTTCGCCAACATTTTCAACGACTCGGC--GGGCGCGATGAACGT    788

BSNT_05268___    792 ACAGGTGATACCATTATTCAATCACCTGCCGTTTGTCGAGCTGCCTGCGA    841
                     .||||||||.||..|.||.||.||.||.|||||.|||||..|.||.||..
BL00495___mdx    789 CCAGGTGATCCCGCTTTTGAACCAGCTTCCGTTCGTCGACATCCCGGCTG    838

BSNT_05268___    842 TCGCGTGGAAGACTGATCCTTTCTGGACAAAGACAGCCCTCATTATGATT    891
                     ||||.||||||||.|||||.||||||||.|||||.||..|.||||||||.
BL00495___mdx    839 TCGCATGGAAGACCGATCCGTTCTGGACGAAGACGGCTTTGATTATGATC    888

BSNT_05268___    892 CAGACGTGGCTCGGCTTTCCATATATATATGTCATGGTAACGGGAGTGCT    941
                     ||||||||||||||.|||||.||.||.|||||||||||.|||||.|||||
BL00495___mdx    889 CAGACGTGGCTCGGTTTTCCCTACATTTATGTCATGGTGACGGGGGTGCT    938

BSNT_05268___    942 TCAGGCGATTCCAGGTGAATTGTATGAAGCGGCAAAGATTGACGGGGCCA    991
                     ||||||||||||.||.||..|.|||||||||||||||||||||||.||.|
BL00495___mdx    939 TCAGGCGATTCCCGGAGAGCTTTATGAAGCGGCAAAGATTGACGGCGCGA    988

BSNT_05268___    992 CTTTTATTCAGCGTTTTCGGCATATTACATTCCCGATGATTTTATTTGCC   1041
                     |.|||||||||||.|||...||.|||||..|.|||||||||||||||||.
BL00495___mdx    989 CATTTATTCAGCGCTTTAAACACATTACGCTGCCGATGATTTTATTTGCG   1038

BSNT_05268___   1042 ACAGCACCCGTGATGATTACTCAGTATACGTTTAATTTCAATAATTTCTC   1091
                     ||.|||||.|||||||||||.||||||||.||||||||||||||.|||||
BL00495___mdx   1039 ACCGCACCGGTGATGATTACCCAGTATACATTTAATTTCAATAACTTCTC   1088

BSNT_05268___   1092 GATCATCTATTTATTTAATGAGGGAGGGCCAGGCAGTGCGGGAGCCGGGG   1141
                     |||||||||||||||||||||.||.||.||.||.||||||||.|||||.|
BL00495___mdx   1089 GATCATCTATTTATTTAATGAAGGCGGTCCGGGGAGTGCGGGGGCCGGAG   1138

BSNT_05268___   1142 CCGGATCGACCGATATCTTAATTTCGTGGATTTATAAACTGACAACAGGC   1191
                     ||||.||.|||||.||||||||.||.|||||.|||||.|||||.||.||.
BL00495___mdx   1139 CCGGGTCAACCGACATCTTAATATCCTGGATCTATAAGCTGACGACGGGG   1188

BSNT_05268___   1192 ACATCACCCCAATATTCCGTTGCGGCGGCTGTGACACTGTTAATTTCTTT   1241
                     ||.||.||.||.||||||||.|||||.|||||.||||||.|.||||||||
BL00495___mdx   1189 ACGTCGCCGCAGTATTCCGTGGCGGCTGCTGTCACACTGCTCATTTCTTT   1238

BSNT_05268___   1242 CATTGTCATTGGAATTTCACTGATTGCTTTCAAAAAATCGAATGCTTTTG   1291
                     |||||||||.||..||||.|||||||||||.||.|||||||||||.||||
BL00495___mdx   1239 CATTGTCATCGGGGTTTCCCTGATTGCTTTTAAGAAATCGAATGCCTTTG   1288

BSNT_05268___   1292 GCAATGAGGAGGTTATGTAG   1311
                     |||||||||||||.||||||
BL00495___mdx   1289 GCAATGAGGAGGTCATGTAG   1308


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.