Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01742 and BL00485
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:14
# Commandline: needle
# -asequence dna-align/BSNT_01742___yhfK.1.5803.seq
# -bsequence dna-align/BL00485___yhfK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01742___yhfK-BL00485___yhfK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01742___yhfK-BL00485___yhfK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01742___yhfK
# 2: BL00485___yhfK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 689
# Identity: 448/689 (65.0%)
# Similarity: 448/689 (65.0%)
# Gaps: 88/689 (12.8%)
# Score: 1338.5
#
#
#=======================================
BSNT_01742___ 1 ATGAAAGTGTTTTTAATCGGAGCGAACGGACAAATCGGGC---------- 40
||||||||||||.||.|.||.|||||||||||||||||||
BL00485___yhf 1 ATGAAAGTGTTTGTAGTGGGGGCGAACGGACAAATCGGGCGCCGTTTGAC 50
BSNT_01742___ 41 --AAAGACTCGTCTCTTT--ATTCCAAGATAATCCTGATCATTCCA--TC 84
|||| ||| || .|||..|.| ||.||| || ||
BL00485___yhf 51 GAAAAG---------TTTGAAT---GAGAGCAGC--GAACAT--CAGGTC 84
BSNT_01742___ 85 AGAGCGATGGTCAGAAAAGAAGAACA---GAAAGCGTCTCTTGAAGC--T 129
||.||.|||||.|||||.|||||.|| |.|||| .|||||.| |
BL00485___yhf 85 AGGGCAATGGTGAGAAATGAAGAGCAGGCGCAAGC----TTTGAAACAAT 130
BSNT_01742___ 130 GCCGGTGCAGAAGCTGTGCTTGCGAATCTGGAGGGCAGCCCG--GAAGAA 177
|.||..|||||.|.|.|||.||.|||.|.||.|||| ||| |||...
BL00485___yhf 131 -CGGGAACAGAAACAGCGCTCGCTAATTTAGAAGGCA--CCGTTGAAAGC 177
BSNT_01742___ 178 ATCGCCGCTGCGGCAAAAGGCTGTGACGCGATCATTTTCACAGCCGGTTC 227
|||||.|..|||||..|.|||||.||||||||..|.||.||.|||||.||
BL00485___yhf 178 ATCGCAGAAGCGGCGGAGGGCTGCGACGCGATTGTCTTTACCGCCGGCTC 227
BSNT_01742___ 228 CGGCGGCAGCACAGGCTATGATAAAACGCTGCTGGTGGATCTT-GATGGA 276
.|||||||..||.|||..|||.||||||||..||||.|| ||| |||||.
BL00485___yhf 228 AGGCGGCAATACGGGCGCTGACAAAACGCTTTTGGTCGA-CTTGGATGGG 276
BSNT_01742___ 277 GCGGCAAAAGCCATTGAAGCTGCGGACATTGCCGGAATCAAACGGTTTAT 326
||||..|||.|.||.|||||.||.||.|..||.||.||....||.|||||
BL00485___yhf 277 GCGGTTAAAACGATCGAAGCCGCCGAAAAAGCAGGCATTCGCCGCTTTAT 326
BSNT_01742___ 327 TATGATCAGCGCCCTGCAAGCCCATAACCGTGAAAATTGGAATGAGGCAC 376
||||.|||||.|..||||.||.||...||||||||||||||||||.||..
BL00485___yhf 327 TATGGTCAGCACATTGCAGGCACACCGCCGTGAAAATTGGAATGAAGCGT 376
BSNT_01742___ 377 TCAAACCTTATTATGTGGCCAAGCATTATGCTGATAAAATTCTGGAAGCG 426
|.||.||.||||||||.|||||.||||||||.|||...||.||.||||..
BL00485___yhf 377 TAAAGCCGTATTATGTCGCCAAACATTATGCGGATCGGATGCTTGAAGGC 426
BSNT_01742___ 427 AGCGGTTTAACCTATACGATTATCCGTCCGGGAGGCCTTCGCAATGAGCC 476
||||..||||.|||.|||||||||||||||||||||||....||.||.||
BL00485___yhf 427 AGCGAATTAAACTACACGATTATCCGTCCGGGAGGCCTGTTAAACGAACC 476
BSNT_01742___ 477 TGGAAC-------GGGAACTGTTTCAGCAGCGAAGGATCTGGAGCGGGGA 519
.||.|| |.||| |||.|||.|..||||.|||||.|||
BL00485___yhf 477 GGGCACAGGCCGGGTGAA-------AGCCGCGGAAAATCTTGAGCGCGGA 519
BSNT_01742___ 520 TTTATTTCCCGTGAGGACGTTGCAAAAACGGTCATTGC----CTCTTTA- 564
...|||.|.|||||.||.||.||..|.||..||.|.|| ||| |
BL00485___yhf 520 ACGATTCCGCGTGAAGATGTGGCCGATACCATCTTGGCGGCGCTC---AC 566
BSNT_01742___ 565 -GATGAGAAGA-ATACGGAAAATCGGGCCTTTGATCTGACAGAAGGAGAT 612
||.|||.|.| ||.|.| |||..|.||.|||.||......||.|||
BL00485___yhf 567 CGAGGAGCACACATTCCG----TCGTTCGTTCGATTTGGTTTCGGGTGAT 612
BSNT_01742___ 613 ---ACGCCGATTGCCGAAGCATTGAAGAAACTATGA--- 645
||||| .|||||.||..||| ||.|||| |
BL00485___yhf 613 CAAACGCC---CGCCGAGGCGCTGA--AATCTAT-ATAA 645
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