Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00352 and BL00477
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:00
# Commandline: needle
# -asequence dna-align/BSNT_00352___adaB.1.5803.seq
# -bsequence dna-align/BL00477___adaB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00352___adaB-BL00477___adaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00352___adaB-BL00477___adaB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00352___adaB
# 2: BL00477___adaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 608
# Identity: 345/608 (56.7%)
# Similarity: 345/608 (56.7%)
# Gaps: 148/608 (24.3%)
# Score: 842.0
#
#
#=======================================
BSNT_00352___ 1 ATGGA--AACAAATAAACCAACCCTTTATTGGTCTTTACTAATGTT--CA 46
||||| |.||||| |.|.||.|||..|...||.|| || |.
BL00477___ada 1 ATGGACGATCAAAT--------CGTATACTGGCGTACGCTTAT-TTGCCG 41
BSNT_00352___ 47 AGGATTGGAATTTTTATATTGCTTCAACTTTAAAG-----GGGCT-TGTG 90
||| ||||.|..||.|.||||...|.||| | ||||| |||
BL00477___ada 42 AGG-TTGGCAGATTCACATTGGGGCGACT-----GCCCGCGGGCTCTGT- 84
BSNT_00352___ 91 TTTGTAGGTTCACA----GAACAAACCAA----TCGAGGAATTGTTCGAA 132
||.||| ||...||.||| |||||||.|||..||..
BL00477___ada 85 --------TTTACAGGGGGATGGAATCAAGGCTTCGAGGATTTGGCCGCT 126
BSNT_00352___ 133 TGGGCTAAGAAACGCTTT--CCAGGAAGTCTTCTTGTTGAAGAT----GA 176
||||||.|.|||.|.||| .|||..|||.||| || ||
BL00477___ada 127 TGGGCTGAAAAAAGATTTACACAGCCAGTTTTC---------ATTCGGGA 167
BSNT_00352___ 177 TGATAA--GCTT----GAACCCTATGCTGTTGAAATCA-CTCAA----TA 215
|||.|| |.|| ||| ||.||.| |.|| ||..| ||
BL00477___ada 168 TGACAAAGGATTGGCAGAA---TACGCCG-----AGCAGCTGCAGGCGTA 209
BSNT_00352___ 216 TCTAGAA-GGAAAGCGGAAAAACT--TTACTG--TTCCAGTTGAGTACGC 260
| |.||| ||.||||| |||| ||.|.| ||||.||.||....||
BL00477___ada 210 T-TTGAACGGCAAGCG----AACTCATTTCAGCTTTCCTGTCGACCTTGC 254
BSNT_00352___ 261 CGGTACGCAATTTCAGCTAGCCGTCTGGAATGCACTTTGTGAAATTCCTT 310
|||.||||..||||||||.||.||.|||||.||.||.|..|||||.||||
BL00477___ada 255 CGGCACGCCTTTTCAGCTGGCAGTGTGGAAGGCGCTCTCCGAAATCCCTT 304
BSNT_00352___ 311 ATGGACAG-ACGAAATCCTATTCCGACATTGCAAATGATATAAATAAACC 359
|.|| ||| ||....|||||||||||.||.||..|..||||..| |||.|
BL00477___ada 305 ACGG-CAGCACTTGCTCCTATTCCGATATCGCCGAGCATATTGA-AAAGC 352
BSNT_00352___ 360 A-GCAGCTGTTCGTGCTGTAGGTGCGGCTATTGGGGCTAATCCGGTATTA 408
| ||.|||||.||.||.|||||.|||||.||.||.||.||||||.|.|||
BL00477___ada 353 AGGCCGCTGTGCGGGCAGTAGGCGCGGCGATCGGCGCAAATCCGCTGTTA 402
BSNT_00352___ 409 ATTACTGTACCGTGCCATCGTGTAATAGGAAAGAATG----GCTCATTAA 454
||....||.||.||||||||.||.||.||.||.|..| |||| |
BL00477___ada 403 ATGGTGGTGCCTTGCCATCGGGTTATCGGTAAAAGCGGGCAGCTC----A 448
BSNT_00352___ 455 CTGGCTATCGGGGCGGATTTGAAATGAAGACACTGCTCCTCGATCTGGAA 504
|.||.||.|||||||||||.||.||||| ||
BL00477___ada 449 CGGGATACCGGGGCGGATTGGATATGAA--------------------AA 478
BSNT_00352___ 505 AAGCGAGCTTCATCTGA----AATGGA---------TGT-TCCTC---AT 537
||| |.|||| .||||| ||| .||.| ||
BL00477___ada 479 AAG--------AACTGATGATGATGGAGTCCGGCGGTGTAACCGCACAAT 520
BSNT_00352___ 538 TGA----- 540
|.|
BL00477___ada 521 TCAATTAA 528
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