Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06243 and BL00472
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:12
# Commandline: needle
# -asequence dna-align/BSNT_06243.1.5803.seq
# -bsequence dna-align/BL00472___yybF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06243-BL00472___yybF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06243-BL00472___yybF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06243
# 2: BL00472___yybF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1305
# Identity: 392/1305 (30.0%)
# Similarity: 392/1305 (30.0%)
# Gaps: 792/1305 (60.7%)
# Score: 864.0
#
#
#=======================================
BSNT_06243 0 -------------------------------------------------- 0
BL00472___yyb 1 ATGACCTACATACAGCCGCATTCGAAGGATTATCACAAAGCGAGCATCGC 50
BSNT_06243 0 -------------------------------------------------- 0
BL00472___yyb 51 CTTATTCATCAGCGGTTTTGTGACATTTGCCACACTTTACACCACACAGC 100
BSNT_06243 0 -------------------------------------------------- 0
BL00472___yyb 101 CGCTCATGCCTCTGTTTGCGGAGGAATTCGGCATATCGGCGGCAGCTGCA 150
BSNT_06243 0 -------------------------------------------------- 0
BL00472___yyb 151 AGCTTAACTTTATCCATTTCAACAGGCATATTGGCTTTTGCATTGCTCAC 200
BSNT_06243 0 -------------------------------------------------- 0
BL00472___yyb 201 GGCAGCAGCTTTATCTGACGGGTTCGGCCGGAAAACGATTATGGCAATAT 250
BSNT_06243 0 -------------------------------------------------- 0
BL00472___yyb 251 CCCTGTTTGCGACATCAGTGCTCGGCCTCTTGACCGCCTTTAGTCCGAAC 300
BSNT_06243 0 -------------------------------------------------- 0
BL00472___yyb 301 TTCGCGGCGCTCTTGGCGATGAGAGGGCTGCTTGGCTTTTTCCTTGCAGG 350
BSNT_06243 0 -------------------------------------------------- 0
BL00472___yyb 351 CGTGCCCGCGATCGCCATGGCTTATGTCGGAGAGGAATTTGATCCGCGAG 400
BSNT_06243 0 -------------------------------------------------- 0
BL00472___yyb 401 GGCTCGGCAAAATGATGGGGCTATACATTAGCGGCACAAGCCTCGGAGGA 450
BSNT_06243 1 ---------ATGTCTCTGATCGGCC---------ACTTG----------- 21
|.|..|.|||.||||| |||||
BL00472___yyb 451 ATGAGCGGAAGGCTTTTGACCGGCCTTTTGACAGACTTGTTCAGCTGGCG 500
BSNT_06243 22 ---------AGGGA---------------CCGTAAACTATTCAGC---TT 44
|||.| |.|| ||||||.||| ||
BL00472___yyb 501 CGCGGCGCTAGGAATCATCGGGGCATTATCAGT--ACTATTAAGCTATTT 548
BSNT_06243 45 GTTT--------------------------CTC----------------A 52
|||| ||| |
BL00472___yyb 549 GTTTTGGATTTTGCTGCCCCGGCCGCAGCACTCCGCTAAGCGAAAAACAA 598
BSNT_06243 53 TTGT-------------TT--------------TTTT------------G 63
.||| || |.|| |
BL00472___yyb 599 GTGTGAAAAAAGCGAGCTTGGCCTACGGCGCCGTCTTGATGAACAAACGG 648
BSNT_06243 64 CTGC------------------------------TTGGAAGCAATGTTGC 83
|||| |.||||||..||||.|
BL00472___yyb 649 CTGCTGTCAATCATTTCACTTGGATTTCTATTAATGGGAAGCTTTGTTAC 698
BSNT_06243 84 CTTGTTTAATTACATTGTGTATGTGCTGTTGGGCCCGCCGT----ATTCG 129
..||||.|||||.||.|.||.|..|.||.||||.||.|||| |.||.
BL00472___yyb 699 GCTGTTCAATTATATCGGGTTTCAGTTGATGGGACCTCCGTACAGACTCT 748
BSNT_06243 130 CTTAATAAAGCATTTTCCAGCTGG---ATCTTTATTGTGATGATT----- 171
||.|| |.|.| ||.|.|| ||||||||.|| |.|||
BL00472___yyb 749 CTCAA------ACTGT-CATCGGGTTCATCTTTATCGT--TTATTTGGCG 789
BSNT_06243 172 -GTAGGCATTTTCAGCTC-GTCTTTCAT-TGGAAGAATGGTTGATCGGTA 218
|.|.|| ||||.|| ||||.| || .||||||| .|..|||||.|.
BL00472___yyb 790 GGGACGC----TCAGTTCTGTCTAT-ATGGGGAAGAA-AGCCGATCGTTT 833
BSNT_06243 219 TGGCTATCCGAAAATATTGGTGATGAATATTTTCATCGTCATT------G 262
||||...||| |||.||.||||.||....||.|.|||| |
BL00472___yyb 834 TGGCAGCCCG------TTGATGCTGAAAATCGGGATTGCCATTATCGCAG 877
BSNT_06243 263 CAGGTGCGTTATTTACGATAAACAATATG-CTGGCAG-------TGAAAA 304
.|||.||.||..|||||.| |.|| || ||| |.||||
BL00472___yyb 878 GAGGCGCATTGCTTACGCT------TCTGCCT--CAGCTTCCTCTTAAAA 919
BSNT_06243 305 TTCTGGGGATTGCCCTCTTTACATTCGGTTTTTTCGGAGGGCATTCAGTT 354
||...||.||.||..|.||||||||.||.||||||||...||||||..|.
BL00472___yyb 920 TTGCCGGAATCGCTGTTTTTACATTTGGATTTTTCGGGTCGCATTCGATC 969
BSNT_06243 355 GCCAGCAGCTGGGT-GGGCAGGAGAGCCCTTCAC--------AACAAAGC 395
||.|||..|||||| |||||| || ||||..||
BL00472___yyb 970 GCAAGCTCCTGGGTCGGGCAG-----------ACGGCCGGCGAACAGCGC 1008
BSNT_06243 396 --ACAGGCTTCATCGCTGTATTTGTT---CTTTTATTACGC-CGGTTCAA 439
.||.|||||.||.||.||||||.| ||.|||| | |||.||||
BL00472___yyb 1009 GTTCAAGCTTCCTCCCTTTATTTGCTGAGCTATTAT----CTCGGCTCAA 1054
BSNT_06243 440 --------GTGTTTTCAGAACAATCGGAGGGCTATTCTGGTCTGGTTTTC 481
|.||.|| |||||||..|.||||||.|...||||.
BL00472___yyb 1055 GCTTAGCGGGGTCTT--------TCGGAGGCTTCTTCTGGACCCATTTTA 1096
BSNT_06243 482 ACTGGCTGGGCGTTGTCGGTATGATCACCTTCAT------GCTGC---TG 522
|.||||.| ||.||.|||.|.||||| ||||| ||
BL00472___yyb 1097 AATGGCCG---------GGAATCATCTCATTCATTATCGGGCTGCTTTTG 1137
BSNT_06243 523 ATTGCGCTATGGCTGTCGGG----ATACTTGGCAAGAAGTGCGAAAATGC 568
|| |||| |.||.|| .|.|||.|| |||| ||
BL00472___yyb 1138 AT--CGCT-----TATCCGGTCATTTTCTTTGC--------CGAA---GC 1169
BSNT_06243 569 CGGATAAAAGCAACGAAAAAGG--ATTCAATTGA---------------- 600
| |||||.||| |||.|| |..|||||.|
BL00472___yyb 1170 C----AAAAGAAAC--AAACGGCAAGACAATTCACAGGTCCGAAATAAAA 1213
BSNT_06243 600 ----- 600
BL00472___yyb 1214 GCTAA 1218
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