Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04241 and BL00471

See Amino acid alignment / Visit BSNT_04241 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:20
# Commandline: needle
#    -asequence dna-align/BSNT_04241___ytbE.1.5803.seq
#    -bsequence dna-align/BL00471___ytbE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04241___ytbE-BL00471___ytbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04241___ytbE-BL00471___ytbE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04241___ytbE
# 2: BL00471___ytbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 887
# Identity:     607/887 (68.4%)
# Similarity:   607/887 (68.4%)
# Gaps:          82/887 ( 9.2%)
# Score: 2032.5
# 
#
#=======================================

BSNT_04241___      1 ---ATGA---CAACACATTTACAAGCAA---AAGCAACACTTCATAATGG     41
                        ||||   |||.|.||||.||||  |   ||.||| |.|..||||.||
BL00471___ytb      1 ATGATGACAGCAAAAAATTTGCAAG--ATCGAATCAA-ATTGAATAACGG     47

BSNT_04241___     42 GGTAGAAATGCCTTGGTTCGGCCTCGGCGTGTTCCAAGTGGAAGAAGGAT     91
                     |..||..|||||||||||.||.||.|||||.||..||||.||||||||..
BL00471___ytb     48 GACAGCTATGCCTTGGTTTGGACTTGGCGTATTTAAAGTAGAAGAAGGGC     97

BSNT_04241___     92 CTGAACTGGTAAACGCAGTTAAAACTGCCATTGTTCACGGGTACCGCAGT    141
                     |.|||||||||.|.||.||.|||||.||.|||...|||||.|||||||||
BL00471___ytb     98 CCGAACTGGTACAAGCCGTAAAAACGGCGATTAAACACGGCTACCGCAGT    147

BSNT_04241___    142 ATTGATACTGCAGCAATCTATGGAAATGAAGCTGGAGTCGGAGAAGGGAT    191
                     ||||||||.|||||.|||||.||.|||||||..||.||.||..||||.||
BL00471___ytb    148 ATTGATACCGCAGCCATCTACGGTAATGAAGAGGGGGTTGGGCAAGGAAT    197

BSNT_04241___    192 TCGGGAAGGCATTG-AAGAAGCAGGCATTTCAAGAGAGGATCTGTTTATC    240
                     .||.| |||..||| |||||||.||||||||||||||.||.||||||.|.
BL00471___ytb    198 CCGCG-AGGGGTTGAAAGAAGCCGGCATTTCAAGAGAAGACCTGTTTGTT    246

BSNT_04241___    241 ACATCGAAAGTATGGAATGCGGATTTAGGCTACGAAGAAACACTCGCCGC    290
                     |||||.||.||.|||||||..|||||||||||.||.|||||..|.||.||
BL00471___ytb    247 ACATCAAAGGTCTGGAATGACGATTTAGGCTATGACGAAACGATTGCAGC    296

BSNT_04241___    291 GTTTGAAACAAGTCTGTCCAAA--CTCGGTCTGGATTATTTGGATCTATA    338
                     .|.|||..|.||||  ||.|||  |||||.||.||.||..|.|||.||||
BL00471___ytb    297 CTATGAGGCGAGTC--TCGAAAAGCTCGGACTTGACTACCTTGATTTATA    344

BSNT_04241___    339 CCTCATCCACTGGCCTGTAGAAGGAAAGTATAAAGAAGCTTGGAGAGCGC    388
                     |||.||||||||||||||.||||||...||.||||..||.||||.|||||
BL00471___ytb    345 CCTGATCCACTGGCCTGTTGAAGGACGCTACAAAGCGGCGTGGAAAGCGC    394

BSNT_04241___    389 TTGAAACGCTGTATAAAGAAGGCCGTATCAAAGCGATTGGCGTAAGCAAC    438
                     |||||||.||.|||.||.||||.||..|.|||||.||.||.||.|||||.
BL00471___ytb    395 TTGAAACACTTTATGAACAAGGACGCGTAAAAGCAATCGGAGTGAGCAAT    444

BSNT_04241___    439 TTCCAAATTCACCATCTTGAAGATCTGATGACGGCAGCTGAAA-------    481
                     ||.||.|||||||||||.|||||..|          |||||||       
BL00471___ytb    445 TTTCAGATTCACCATCTGGAAGACTT----------GCTGAAAGATGCCG    484

BSNT_04241___    482 ---TTAAGCCTATGATTAACCAAGTGGAATTTCACCCGCGCCTCACACAA    528
                        |.||.||...|||.|||||.||.||.|.|||.|||||.||.||.||.
BL00471___ytb    485 CCGTCAAACCGGCGATCAACCAGGTTGAGTATCATCCGCGGCTGACGCAG    534

BSNT_04241___    529 AAAGAGTTGATAAG-ATACTGCCAAAATCAGGGCATCCAGATGGAGGCTT    577
                     ||||||.|| .||| .|..||||.....||.|||||||||.||.|.||.|
BL00471___ytb    535 AAAGAGCTG-CAAGCGTTTTGCCGTGCGCACGGCATCCAGCTGCAAGCAT    583

BSNT_04241___    578 GGTCACCTTTAATGCAGGGACAGCTGCTGGATCACCCTGTATTGGCTGAC    627
                     ||||.||..|.|||||.||.||..||||                 |.|.|
BL00471___ytb    584 GGTCGCCGCTGATGCAAGGCCAATTGCT-----------------CAGCC    616

BSNT_04241___    628 ATC----GCTCAAACATAT----------------AATAAATCTGTCGCA    657
                     |||    |||.|||.||||                ||.|.|.|   .||.
BL00471___ytb    617 ATCCACTGCTGAAAGATATCGCGGACAAGTACGGCAAGACACC---GGCC    663

BSNT_04241___    658 CAAATTATTTTGCGCTGGGATCTGCAGCATGGCATCATTACGATTCCTAA    707
                     |||.|.|||||||||||||||.||||..|.||..||.||||||||||.||
BL00471___ytb    664 CAAGTCATTTTGCGCTGGGATTTGCAAAACGGGGTCGTTACGATTCCGAA    713

BSNT_04241___    708 ATCAACGAAGGAACACCGCATTAAAGAAAATGCAAGCGTATTTGACTTTG    757
                     .||.||.||.|...|.||.|||....||||.||...|.|||||||.||||
BL00471___ytb    714 GTCGACTAAAGCGGAGCGGATTGCCCAAAACGCGGACATATTTGATTTTG    763

BSNT_04241___    758 AATTAACGCA-GGATGACATGAACCGAATCGATGCACTGAATGAAAACTT    806
                     ||.|.|| || .||.||.|||||.|.|||.||.||.||||||||||||..
BL00471___ytb    764 AACTGAC-CACCGAGGAAATGAAGCAAATTGACGCGCTGAATGAAAACAC    812

BSNT_04241___    807 GCGCGTCGGTCCTGATCCGGACAACTTTGATTTTTAA    843
                     .||.|||||.||||||||.||.||||||||.||||||
BL00471___ytb    813 CCGTGTCGGCCCTGATCCCGATAACTTTGACTTTTAA    849


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04241 and BL00471

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
