Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05202 and BL00453
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:20
# Commandline: needle
# -asequence dna-align/BSNT_05202.1.5803.seq
# -bsequence dna-align/BL00453.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05202-BL00453.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05202-BL00453.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05202
# 2: BL00453
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1094
# Identity: 269/1094 (24.6%)
# Similarity: 269/1094 (24.6%)
# Gaps: 754/1094 (68.9%)
# Score: 529.0
#
#
#=======================================
BSNT_05202 1 -----ATGAAGCAGAGTAAAAGAAAGCATCTTCAGACG-TTATTTGA--G 42
|| |..|||.|.|| |||||| ||.| ||||||.| |
BL00453 1 TTGGTAT-ATACAGCGGAA-------CATCTT--GATGATTATTTAATGG 40
BSNT_05202 43 A-----CATTAGGCGAAAAACATCAGTTTAACGGGACGGTTCTGGC---- 83
| ||| |.||.| ||||.|||.||||.| ||
BL00453 41 AACAAGCAT----CCAACA--ATCATTTTCACGGCA--------GCATTT 76
BSNT_05202 84 TGCGGAGGGTGGCGACATTTTA----TATCACCACTCTTTT--------- 120
||| |||| |.|||..| ||| |||.||.|
BL00453 77 TGC------TGGC-AGATTCAAACGGTAT----ACTGTTATCGAAAGGAT 115
BSNT_05202 121 --GGCTATGCGGAAATG-ACGGAAAAACGCCCGTTGAA-----AACC--- 159
||.||||| .||.|| |.|||.|| |.|||| ||||
BL00453 116 ACGGTTATGC-CAATTGTAAGGACAA------GGTGAAGAATGAACCGTC 158
BSNT_05202 160 --AACTCT------TTGTTTGAGTTAGCGTCTTTGTCAAAGCCTTTTACA 201
.||.|| || ||.||..||.||||||..||.|||
BL00453 159 TACACGCTACCAAATT----------GCCTCACTGACAAAGCAATTCACA 198
BSNT_05202 202 GC-ATTG-GGAATCATCTTGCTGGAGGAGAAGGGGATTCTTGGCTATGAG 249
|| ||.| || ||||...||||.|.||.||||||.|.|||.|
BL00453 199 GCTATAGCGG--TCATGCAGCTGCAAGAAAAGGGGCTGCTTCG------- 239
BSNT_05202 250 GATAAAGTGGATCGCTGGCTGCCCGGT---------TTT------CCGTA 284
||.||..|| |||||| ||| | ||
BL00453 240 --TACAGATGA----------CCCGGTACAAAACTATTTAGAAGGC--TA 275
BSNT_05202 285 TC---AGGGCG------TAACGATTCGGCATTTATTGAACCATACGTCAG 325
|| |.|||| |.||.||....||||||||.|.|||||||||.|
BL00453 276 TCCGAACGGCGACAGCATTACCATCAAACATTTATTAAGCCATACGTCCG 325
BSNT_05202 326 GGCTTCCTGATT---------------------ATATGG----------- 343
|..||||||||| ||||.|
BL00453 326 GAATTCCTGATTTTCTAGAGGAAGAATTGCTCGATATTGAGCTGGAGCGC 375
BSNT_05202 344 -----GATG----------------GTTTTTTTGCCAA-----TTGGGAT 367
|.|| |||||.|||.||| |||...|
BL00453 376 GCACCGTTGGACCAATTTATCAGACGTTTTATTGACAAGCCGCTTGAATT 425
BSNT_05202 368 TC-------ACACAAG-----ATTGCGGTGAATCAGGAT----------- 394
|| ||| ||| |||.|.||.|.|||||||
BL00453 426 TCGGCCGGGACA-AAGGTTCAATTACAGTAATTCAGGATACATACTGCTT 474
BSNT_05202 395 ---------ATTG--TCGAT--------ATGCTGATGAATGA-------- 417
|||| .|||| |.|||.|||.| ||
BL00453 475 ACAAAAATCATTGAAACGATCACAAATGAAGCTTATGGA-GACGTTATTC 523
BSNT_05202 417 -------------------------------------------------- 417
BL00453 524 AACAATTGATCTTTGACCCTTTAGGCATGAAAAACTCCGGTTTTTTCTCT 573
BSNT_05202 417 -------------------------------------------------- 417
BL00453 574 TCTCCGGAAGATATTTCGCCTACAGTCGGATATTTATGCCTGAATCGTGA 623
BSNT_05202 417 -------------------------------------------------- 417
BL00453 624 AATGATCAAAGCGCCTATCGTATACGGCTACGGGGAAAGCGGGCTGTATT 673
BSNT_05202 417 -------------------------------------------------- 417
BL00453 674 CAACCGTTGAAGACTTGTACTTATGGGACAGGGCGCTTTACACCGAGAAG 723
BSNT_05202 417 -------------------------------------------------- 417
BL00453 724 CTTGTCTCAAAAGATGCTTTGAAAGAAGCCCTTTACAGCCGCGTCAAAAA 773
BSNT_05202 417 -------------------------------------------------- 417
BL00453 774 GCAGGCTTTTGCAGCCGAAGGCCCTTCTCCGGCGCTCATTCAAAACAATT 823
BSNT_05202 417 -------------------------------------------------- 417
BL00453 824 CGATCGGATACGGATGGTTTATTAATCATCAAAATAAGTATAAAATATGG 873
BSNT_05202 417 -------------------------------------------------- 417
BL00453 874 CATGATGGAGAAATCCACGGTTTTATCAGCTCAATTAACCGATACATGGA 923
BSNT_05202 417 -------------------------------------------------- 417
BL00453 924 TGAGAAAAAAGTGCTGATTATGCTCAGCAATTGCAACCTCTCAAAAACTG 973
BSNT_05202 417 -------------------------------------------- 417
BL00453 974 ACGAGATTTTGGCACACTTAGAAGAAGCTTTATTGCAAATGTAG 1017
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