Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04328 and BL00441
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:28
# Commandline: needle
# -asequence dna-align/BSNT_04328___motS.1.5803.seq
# -bsequence dna-align/BL00441___ytxE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04328___motS-BL00441___ytxE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04328___motS-BL00441___ytxE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04328___motS
# 2: BL00441___ytxE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 784
# Identity: 490/784 (62.5%)
# Similarity: 490/784 (62.5%)
# Gaps: 149/784 (19.0%)
# Score: 1451.0
#
#
#=======================================
BSNT_04328___ 1 ATGAAGCTTAGA-AGAGAACGTTTTGAAAGAAGGAA-TGGAAGC--GGAA 46
|||||||||||| | ||||.||||||| .|..||| ||
BL00441___ytx 1 ATGAAGCTTAGACA----------TGAACGAAGGAAGCGCGAGCAGGG-- 38
BSNT_04328___ 47 AAAACAGTCAATCTTCATCCAGCTGGATGGTAACCTTTACAGATCTGATC 96
|.|..||||..|| |.||||||..|.||.|||.|.|||.||||.
BL00441___ytx 39 ----CCGCAAATCGCCA---AACTGGATCATCACGTTTTCGGATTTGATT 81
BSNT_04328___ 97 ACCTTGATCCTTGTGTTCTTTATTTTACTCTTTTCGATGTCCCAAATCGA 146
||..|.|||||.|||||||||||||||||.|||||||||||.||||||||
BL00441___ytx 82 ACGCTCATCCTCGTGTTCTTTATTTTACTGTTTTCGATGTCGCAAATCGA 131
BSNT_04328___ 147 TCTGCAAAAATTCAAAGCGGCAGTGGACTCGA--TCCAGA-AG----GAA 189
|.|..|.|||||||||||.|||||.|..|| | ||.||| || ||.
BL00441___ytx 132 TTTAAACAAATTCAAAGCAGCAGTCGGTTC-ATTTCAAGACAGGGCCGAC 180
BSNT_04328___ 190 GGCAACGGGCTTCAGCCGGACCAAACATCCATAG--AAAAAAAGA----- 232
||||| .||.|||| ||.|| .||||||||
BL00441___ytx 181 GGCAA-----ATCCGCCG-----------CAGAGTTGAAAAAAGACGCGG 214
BSNT_04328___ 233 ---ATACATCCCCA----TCTGATA------CGAAGAAG-CAAGAGGATC 268
|| || .||||.| |.|| ||| |||||.|||
BL00441___ytx 215 GCGAT-------CAGAAGGCTGAAAAAACGGCTAA-AAGCCAAGATGAT- 255
BSNT_04328___ 269 AGCAGGATCAGCTT-CTCAAGAAAGTAAAT-ACATATAT---AAAAGACA 313
|| .|.||||||.|.||| || ||||| ||||.||.
BL00441___ytx 256 ------------TTATTAAAGAAAATCAATGAC-TATATTGAAAAAAACG 292
BSNT_04328___ 314 A----TCA--TTTGAAGGCCCAAATGACAGCCAAACGGGATGAACGCGGT 357
| ||| |||| ||..|.|||||.||.||.|||||.||.
BL00441___ytx 293 AACTGTCAAGTTTG---------ATTGCGGCCAAGCGTGACGAACGGGGC 333
BSNT_04328___ 358 GTCGTGCTCGTTCTTCAGGAGGCTGTGCTGTTTGATACAGGTGAGGCAAA 407
|||.|.|||||.||||||||.||.||..||||||||.||||..|.||
BL00441___ytx 334 GTCATTCTCGTCCTTCAGGAAGCGGTTTTGTTTGATTCAGGGAAAGC--- 380
BSNT_04328___ 408 GGTGCTGAAA----AATGCCGAAACACTTCTTCACCAAATTGCCGTTCTT 453
||..|||||| || ||..|..|.|||.|.||..||||.|||||.|||
BL00441___ytx 381 GGATCTGAAAGACCAA-GCTCACCCGCTTTTGCATAAAATCGCCGTCCTT 429
BSNT_04328___ 454 CTTCAAACC--ATTCCAAATGAC---ATTCAGGTGGAGGGGCATACAGAC 498
| |||||.| ..|||| || ||||..||||||||||||||.|||
BL00441___ytx 430 C-TCAAATCGGTGTCCA----ACCCGATTCGTGTGGAGGGGCATACGGAC 474
BSNT_04328___ 499 AGCCGAAACATTTCGACATACCGATACCCGTCGAACTGGGAGCTATCAGC 548
|||||....||||||||.|||||.|..||.||.||.||||||||.||.||
BL00441___ytx 475 AGCCGCCCGATTTCGACTTACCGTTTTCCATCCAATTGGGAGCTTTCTGC 524
BSNT_04328___ 549 AGCACGGGCAAGTGGGGTTATTCAATACTTCACGTCTAAAGAGAAGCTTC 598
||||.||||.||....||.||....|||||.|||||.||.||.|||||..
BL00441___ytx 525 AGCAAGGGCGAGCACTGTGATCGGCTACTTTACGTCGAAGGAAAAGCTCG 574
BSNT_04328___ 599 CCTCCAAGCGCTTTATTGCTGTCGGTTATGCGGATACAAAGCCAGTAAAG 648
.|||...|||.|||.||||..|||||||||||||||||||.||.||.|.|
BL00441___ytx 575 ACTCGTCGCGTTTTCTTGCCATCGGTTATGCGGATACAAAACCGGTCAGG 624
BSNT_04328___ 649 GATAACAAGACAAATGA---ACACATGAAGGAAAATCGGCGTGTGGAAAT 695
||.|||...|| ||| .||.|||||||||||..||||.||.||.||
BL00441___ytx 625 GACAACCGCAC---TGAGAGCCATATGAAGGAAAACAGGCGCGTCGAGAT 671
BSNT_04328___ 696 AGTGATTAAAAAATCAAAAACGACCTCTTCGTAA 729
.||.||...|||| |||.||
BL00441___ytx 672 TGTCATCGCAAAA-CAATAA-------------- 690
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